Wall clock time and date at job start Sat Apr 11 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48499 * 109.47083 * 274.99082 * 3 2 1 5 5 H 1.48500 * 109.46806 * 34.99042 * 3 2 1 6 6 H 1.48498 * 109.46867 * 154.98920 * 3 2 1 7 7 C 1.38814 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00066 * 172.61031 * 7 2 1 9 9 N 1.36935 * 119.99998 * 352.61412 * 7 2 1 10 10 C 1.46922 * 125.37695 * 185.33422 * 9 7 2 11 11 C 1.54184 * 106.26705 * 162.17950 * 10 9 7 12 12 H 1.08992 * 109.28477 * 271.45644 * 11 10 9 13 13 C 1.50706 * 110.51148 * 151.09422 * 11 10 9 14 14 C 1.51328 * 113.54884 * 289.39948 * 13 11 10 15 15 C 1.51632 * 111.97592 * 304.60822 * 14 13 11 16 16 N 1.44502 * 112.65679 * 42.75877 * 15 14 13 17 17 C 1.34772 * 116.63193 * 154.60094 * 16 15 14 18 18 O 1.21566 * 120.00183 * 186.01106 * 17 16 15 19 19 C 1.47798 * 120.00381 * 6.00575 * 17 16 15 20 20 N 1.32296 * 120.58766 * 6.37515 * 19 17 16 21 21 C 1.32694 * 121.18747 * 179.97438 * 20 19 17 22 22 C 1.35475 * 122.11433 * 0.02562 * 21 20 19 23 23 N 1.36217 * 120.52630 * 359.97438 * 22 21 20 24 24 C 1.36162 * 133.93109 * 179.97438 * 23 22 21 25 25 C 1.35340 * 107.14398 * 179.97438 * 24 23 22 26 26 N 1.33569 * 108.61371 * 0.02562 * 25 24 23 27 27 C 1.31856 * 109.13823 * 359.97438 * 26 25 24 28 28 C 1.44101 * 126.73647 * 334.88953 * 16 15 14 29 29 H 1.09002 * 109.10567 * 253.57830 * 28 16 15 30 30 C 1.46815 * 125.37488 * 5.36988 * 9 7 2 31 31 H 0.96994 * 120.00065 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.09858 * 42.98026 * 10 9 7 33 33 H 1.08998 * 110.14768 * 281.41161 * 10 9 7 34 34 H 1.08995 * 108.67427 * 168.34479 * 13 11 10 35 35 H 1.09002 * 108.56038 * 50.37292 * 13 11 10 36 36 H 1.09002 * 108.97994 * 183.96364 * 14 13 11 37 37 H 1.08996 * 108.91601 * 65.20505 * 14 13 11 38 38 H 1.08997 * 108.84448 * 281.93785 * 15 14 13 39 39 H 1.09003 * 108.76374 * 163.51968 * 15 14 13 40 40 H 1.08004 * 118.94117 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.73390 * 180.02562 * 22 21 20 42 42 H 1.07997 * 126.43330 * 0.03603 * 24 23 22 43 43 H 1.08002 * 125.69897 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.84803 * 300.36661 * 30 9 7 45 45 H 1.08998 * 109.84269 * 61.27922 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6199 0.8029 6 1 3.5964 1.4120 0.5919 7 6 2.0103 -1.2022 -0.0005 8 1 3.0835 -1.2060 -0.1208 9 7 1.3341 -2.3832 0.1514 10 6 1.9552 -3.7085 0.2793 11 6 0.8754 -4.6362 0.8715 12 1 0.9215 -4.5935 1.9596 13 6 1.0932 -6.0568 0.4181 14 6 0.7913 -6.2765 -1.0484 15 6 -0.6154 -5.8407 -1.4096 16 7 -0.9821 -4.5826 -0.8006 17 6 -1.9302 -3.8604 -1.4298 18 8 -2.2077 -2.7451 -1.0336 19 6 -2.6326 -4.4243 -2.6016 20 7 -2.4317 -5.6798 -2.9670 21 6 -3.0564 -6.1983 -4.0166 22 6 -3.9256 -5.4781 -4.7656 23 7 -4.1903 -4.1775 -4.4591 24 6 -4.9916 -3.2222 -5.0063 25 6 -4.8427 -2.1020 -4.2616 26 7 -3.9728 -2.3551 -3.2802 27 6 -3.5631 -3.6046 -3.3772 28 6 -0.4348 -4.0176 0.4068 29 1 -1.1695 -4.1060 1.2070 30 6 -0.1259 -2.5251 0.2114 31 1 -0.4850 0.8400 0.0004 32 1 2.8132 -3.6570 0.9495 33 1 2.2665 -4.0733 -0.6996 34 1 0.4537 -6.7134 1.0081 35 1 2.1332 -6.3248 0.6041 36 1 0.9044 -7.3358 -1.2789 37 1 1.5032 -5.7062 -1.6450 38 1 -1.3168 -6.6081 -1.0821 39 1 -0.6843 -5.7407 -2.4929 40 1 -2.8650 -7.2274 -4.2828 41 1 -4.4131 -5.9390 -5.6119 42 1 -5.6276 -3.3371 -5.8716 43 1 -5.3430 -1.1603 -4.4328 44 1 -0.5194 -1.9504 1.0499 45 1 -0.5705 -2.1729 -0.7193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050143777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:48 Heat of formation + Delta-G solvation = 153.954357 kcal Electronic energy + Delta-G solvation = -30985.283858 eV Core-core repulsion = 27007.340226 eV Total energy + Delta-G solvation = -3977.943631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.06758 -40.53193 -38.57029 -37.48962 -35.36377 -34.28113 -33.02744 -31.92614 -30.69517 -29.76620 -29.31463 -27.32534 -25.56518 -25.31476 -23.77611 -23.38646 -22.39382 -21.81285 -20.91429 -19.86607 -18.63731 -17.89956 -17.67347 -16.65257 -16.35944 -15.96087 -15.70293 -15.66649 -15.21156 -14.83290 -14.33441 -14.09727 -13.93366 -13.87276 -13.80751 -13.60897 -13.17231 -12.98307 -12.80873 -12.37050 -12.07992 -11.81525 -11.44277 -11.32339 -11.07659 -10.85969 -10.66246 -10.52511 -10.34782 -10.17442 -10.07089 -9.92528 -9.87781 -9.62155 -9.50990 -9.07591 -8.82888 -8.35081 -8.25835 -7.79624 -6.53843 -5.46137 -2.80680 -0.00361 1.07659 2.19484 2.69149 2.97242 3.20197 3.52899 3.57270 3.60386 3.76658 3.89474 3.96201 4.12242 4.42954 4.67226 4.83505 4.95385 5.09141 5.12130 5.18051 5.20475 5.27397 5.36268 5.56415 5.61662 5.70832 5.84376 5.87891 5.94889 6.05789 6.10995 6.18535 6.25135 6.37809 6.41151 6.42804 6.57118 6.59079 6.72199 6.83223 6.91801 7.20938 7.32813 7.69994 7.80068 7.88732 7.97326 8.27443 8.51646 8.74346 9.43758 10.05205 10.70442 11.61899 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010877 B = 0.004640 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.711490 B = 6033.099618 C = 8116.665646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.003 4.003 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.074 0.926 9 N -0.606 5.606 10 C 0.142 3.858 11 C -0.101 4.101 12 H 0.080 0.920 13 C -0.102 4.102 14 C -0.131 4.131 15 C 0.119 3.881 16 N -0.566 5.566 17 C 0.540 3.460 18 O -0.450 6.450 19 C 0.194 3.806 20 N -0.427 5.427 21 C 0.022 3.978 22 C 0.023 3.977 23 N -0.358 5.358 24 C -0.086 4.086 25 C 0.032 3.968 26 N -0.423 5.423 27 C 0.192 3.808 28 C 0.130 3.870 29 H 0.060 0.940 30 C 0.157 3.843 31 H 0.253 0.747 32 H 0.032 0.968 33 H 0.014 0.986 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.182 0.818 41 H 0.171 0.829 42 H 0.189 0.811 43 H 0.188 0.812 44 H 0.054 0.946 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.190 -17.934 -10.144 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.120 4.120 12 H 0.099 0.901 13 C -0.140 4.140 14 C -0.169 4.169 15 C -0.004 4.004 16 N -0.300 5.300 17 C 0.323 3.677 18 O -0.320 6.320 19 C 0.029 3.971 20 N -0.144 5.144 21 C -0.117 4.117 22 C -0.103 4.103 23 N -0.033 5.033 24 C -0.220 4.220 25 C -0.121 4.121 26 N -0.142 5.142 27 C -0.056 4.056 28 C 0.026 3.974 29 H 0.078 0.922 30 C 0.033 3.967 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.199 0.801 41 H 0.188 0.812 42 H 0.206 0.794 43 H 0.205 0.795 44 H 0.072 0.928 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.628 -17.197 -8.966 21.227 hybrid contribution -0.449 0.618 -1.419 1.611 sum -9.076 -16.579 -10.385 21.566 Atomic orbital electron populations 1.70031 1.04452 1.24891 1.55145 1.24862 0.95631 0.97418 1.02196 0.86239 0.78679 0.84336 0.77347 1.21869 1.21681 1.20799 1.18937 0.90945 0.82625 1.44026 0.90784 1.44416 1.01950 1.00935 1.85956 1.21377 0.93938 0.86545 0.96600 1.21305 0.95579 0.94512 1.00627 0.90138 1.20495 1.01495 0.96025 0.95974 1.21233 0.97258 1.01117 0.97314 1.21335 0.95150 0.84824 0.99069 1.46521 1.37537 1.20394 1.25542 1.17482 0.82252 0.85535 0.82471 1.91023 1.61623 1.15914 1.63391 1.22634 0.92220 0.87813 0.94428 1.68894 1.20386 1.10597 1.14552 1.22231 0.95282 1.01312 0.92896 1.22644 1.01749 0.83001 1.02873 1.42915 1.29129 1.09449 1.21786 1.22739 1.04321 0.89256 1.05654 1.22950 0.98001 0.98785 0.92318 1.70784 1.11570 1.10017 1.21830 1.22554 1.00750 0.91140 0.91132 1.21196 0.94306 0.97663 0.84221 0.92241 1.21967 0.83697 0.86477 1.04527 0.93669 0.95022 0.96868 0.92520 0.91740 0.91004 0.91570 0.92248 0.88628 0.80144 0.81178 0.79442 0.79538 0.92782 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.67 10.31 55.49 0.57 -28.10 16 2 C 0.00 -0.10 5.48 -17.43 -0.10 -0.19 16 3 Si 0.90 23.39 29.56 -169.99 -5.02 18.37 16 4 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -7.04 10.24 -15.06 -0.15 -7.19 16 8 H 0.07 2.12 7.84 -52.49 -0.41 1.71 16 9 N -0.61 -16.58 3.39 -171.52 -0.58 -17.17 16 10 C 0.14 3.09 6.65 -3.19 -0.02 3.07 16 11 C -0.10 -1.81 3.05 -91.58 -0.28 -2.09 16 12 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.10 -1.40 5.17 -28.72 -0.15 -1.54 16 14 C -0.13 -1.71 5.83 -28.27 -0.16 -1.88 16 15 C 0.12 1.72 4.78 -5.80 -0.03 1.70 16 16 N -0.57 -10.64 3.09 -171.46 -0.53 -11.17 16 17 C 0.54 11.22 7.06 -12.35 -0.09 11.14 16 18 O -0.45 -11.42 12.95 5.31 0.07 -11.35 16 19 C 0.19 3.33 6.66 -80.54 -0.54 2.79 16 20 N -0.43 -5.59 5.96 -8.68 -0.05 -5.65 16 21 C 0.02 0.20 11.01 -18.17 -0.20 0.00 16 22 C 0.02 0.19 11.00 -16.59 -0.18 0.01 16 23 N -0.36 -4.46 2.95 -61.13 -0.18 -4.64 16 24 C -0.09 -0.91 11.80 -16.66 -0.20 -1.10 16 25 C 0.03 0.43 11.83 -17.83 -0.21 0.22 16 26 N -0.42 -8.01 10.76 -11.28 -0.12 -8.13 16 27 C 0.19 3.30 7.66 -153.99 -1.18 2.12 16 28 C 0.13 2.69 3.18 -69.29 -0.22 2.47 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 C 0.16 4.22 4.14 -3.53 -0.01 4.20 16 31 H 0.25 7.89 8.31 -40.82 -0.34 7.55 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.97 6.99 -51.93 -0.36 0.60 16 38 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 39 H 0.10 1.38 5.32 -51.98 -0.28 1.10 16 40 H 0.18 0.84 8.06 -52.48 -0.42 0.41 16 41 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.19 1.86 8.06 -52.49 -0.42 1.43 16 44 H 0.05 1.63 7.28 -51.93 -0.38 1.26 16 45 H 0.09 2.79 4.41 -52.43 -0.23 2.55 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -38.94 351.58 -10.05 -48.99 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.78 Total: -0.17 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: -3.72 Total: 13.72 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -0.89 Total: -74.85 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.94 -10.05 -48.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050143777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.942 kcal (2) G-P(sol) polarization free energy of solvation -38.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds