Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48499 * 109.47083 * 274.99082 * 3 2 1 5 5 H 1.48500 * 109.46806 * 34.99042 * 3 2 1 6 6 H 1.48498 * 109.46867 * 154.98920 * 3 2 1 7 7 C 1.38814 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00066 * 172.61031 * 7 2 1 9 9 N 1.36935 * 119.99998 * 352.61412 * 7 2 1 10 10 C 1.46922 * 125.37695 * 185.33422 * 9 7 2 11 11 C 1.54184 * 106.26705 * 162.17950 * 10 9 7 12 12 H 1.08992 * 109.28477 * 271.45644 * 11 10 9 13 13 C 1.50706 * 110.51148 * 151.09422 * 11 10 9 14 14 C 1.51328 * 113.54884 * 289.39948 * 13 11 10 15 15 C 1.51632 * 111.97592 * 304.60822 * 14 13 11 16 16 N 1.44502 * 112.65679 * 42.75877 * 15 14 13 17 17 C 1.34772 * 116.63193 * 154.60094 * 16 15 14 18 18 O 1.21566 * 120.00183 * 186.01106 * 17 16 15 19 19 C 1.47798 * 120.00381 * 6.00575 * 17 16 15 20 20 N 1.32296 * 120.58766 * 6.37515 * 19 17 16 21 21 C 1.32694 * 121.18747 * 179.97438 * 20 19 17 22 22 C 1.35475 * 122.11433 * 0.02562 * 21 20 19 23 23 N 1.36217 * 120.52630 * 359.97438 * 22 21 20 24 24 C 1.36162 * 133.93109 * 179.97438 * 23 22 21 25 25 C 1.35340 * 107.14398 * 179.97438 * 24 23 22 26 26 N 1.33569 * 108.61371 * 0.02562 * 25 24 23 27 27 C 1.31856 * 109.13823 * 359.97438 * 26 25 24 28 28 C 1.44101 * 126.73647 * 334.88953 * 16 15 14 29 29 H 1.09002 * 109.10567 * 253.57830 * 28 16 15 30 30 C 1.46815 * 125.37488 * 5.36988 * 9 7 2 31 31 H 0.96994 * 120.00065 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.09858 * 42.98026 * 10 9 7 33 33 H 1.08998 * 110.14768 * 281.41161 * 10 9 7 34 34 H 1.08995 * 108.67427 * 168.34479 * 13 11 10 35 35 H 1.09002 * 108.56038 * 50.37292 * 13 11 10 36 36 H 1.09002 * 108.97994 * 183.96364 * 14 13 11 37 37 H 1.08996 * 108.91601 * 65.20505 * 14 13 11 38 38 H 1.08997 * 108.84448 * 281.93785 * 15 14 13 39 39 H 1.09003 * 108.76374 * 163.51968 * 15 14 13 40 40 H 1.08004 * 118.94117 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.73390 * 180.02562 * 22 21 20 42 42 H 1.07997 * 126.43330 * 0.03603 * 24 23 22 43 43 H 1.08002 * 125.69897 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.84803 * 300.36661 * 30 9 7 45 45 H 1.08998 * 109.84269 * 61.27922 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6199 0.8029 6 1 3.5964 1.4120 0.5919 7 6 2.0103 -1.2022 -0.0005 8 1 3.0835 -1.2060 -0.1208 9 7 1.3341 -2.3832 0.1514 10 6 1.9552 -3.7085 0.2793 11 6 0.8754 -4.6362 0.8715 12 1 0.9215 -4.5935 1.9596 13 6 1.0932 -6.0568 0.4181 14 6 0.7913 -6.2765 -1.0484 15 6 -0.6154 -5.8407 -1.4096 16 7 -0.9821 -4.5826 -0.8006 17 6 -1.9302 -3.8604 -1.4298 18 8 -2.2077 -2.7451 -1.0336 19 6 -2.6326 -4.4243 -2.6016 20 7 -2.4317 -5.6798 -2.9670 21 6 -3.0564 -6.1983 -4.0166 22 6 -3.9256 -5.4781 -4.7656 23 7 -4.1903 -4.1775 -4.4591 24 6 -4.9916 -3.2222 -5.0063 25 6 -4.8427 -2.1020 -4.2616 26 7 -3.9728 -2.3551 -3.2802 27 6 -3.5631 -3.6046 -3.3772 28 6 -0.4348 -4.0176 0.4068 29 1 -1.1695 -4.1060 1.2070 30 6 -0.1259 -2.5251 0.2114 31 1 -0.4850 0.8400 0.0004 32 1 2.8132 -3.6570 0.9495 33 1 2.2665 -4.0733 -0.6996 34 1 0.4537 -6.7134 1.0081 35 1 2.1332 -6.3248 0.6041 36 1 0.9044 -7.3358 -1.2789 37 1 1.5032 -5.7062 -1.6450 38 1 -1.3168 -6.6081 -1.0821 39 1 -0.6843 -5.7407 -2.4929 40 1 -2.8650 -7.2274 -4.2828 41 1 -4.4131 -5.9390 -5.6119 42 1 -5.6276 -3.3371 -5.8716 43 1 -5.3430 -1.1603 -4.4328 44 1 -0.5194 -1.9504 1.0499 45 1 -0.5705 -2.1729 -0.7193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050143777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = 125.408404 kcal Electronic energy + Delta-G solvation = -30986.521703 eV Core-core repulsion = 27007.340226 eV Total energy + Delta-G solvation = -3979.181477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.04196 -42.00548 -39.66075 -38.97485 -37.00749 -35.43736 -34.54983 -33.74091 -31.81920 -31.30555 -30.50264 -28.92977 -27.30548 -26.66625 -25.28272 -24.38843 -23.59572 -23.16732 -22.50366 -21.35469 -19.62678 -19.23034 -19.15408 -18.48219 -17.50065 -17.20368 -17.09017 -16.86551 -16.55189 -16.20960 -15.79026 -15.72690 -15.33360 -15.21669 -14.96786 -14.77530 -14.37163 -14.12987 -14.04776 -13.99122 -13.64637 -13.57771 -12.98479 -12.94547 -12.70284 -12.58400 -12.54010 -12.09300 -11.97082 -11.78028 -11.72461 -11.42864 -11.30950 -11.12982 -10.91360 -10.64100 -10.24107 -10.03887 -9.36453 -9.19356 -8.76784 -7.75839 -5.15368 -1.00112 0.15733 1.27825 1.40003 1.44114 1.53903 1.63939 1.86647 1.95427 2.50277 2.56945 2.84105 2.98277 3.25915 3.36297 3.59439 3.73395 3.78074 3.92003 3.98742 4.10830 4.10937 4.20155 4.20830 4.34818 4.38810 4.64620 4.67349 4.73310 4.76737 4.78589 4.91578 5.01055 5.05037 5.20130 5.21401 5.26967 5.42067 5.45208 5.47817 5.53031 5.58776 5.76136 5.85942 6.09527 6.26220 6.39166 6.52051 6.82792 7.11186 7.25420 7.85312 8.48566 9.30004 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010877 B = 0.004640 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.711490 B = 6033.099618 C = 8116.665646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.251 4.251 8 H 0.083 0.917 9 N -0.631 5.631 10 C 0.137 3.863 11 C -0.087 4.087 12 H 0.088 0.912 13 C -0.098 4.098 14 C -0.128 4.128 15 C 0.115 3.885 16 N -0.565 5.565 17 C 0.531 3.469 18 O -0.522 6.522 19 C 0.135 3.865 20 N -0.403 5.403 21 C 0.006 3.994 22 C 0.059 3.941 23 N -0.358 5.358 24 C -0.056 4.056 25 C 0.002 3.998 26 N -0.505 5.505 27 C 0.162 3.838 28 C 0.141 3.859 29 H 0.053 0.947 30 C 0.172 3.828 31 H 0.241 0.759 32 H 0.041 0.959 33 H 0.019 0.981 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.238 0.762 41 H 0.236 0.764 42 H 0.248 0.752 43 H 0.205 0.795 44 H -0.003 1.003 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 -22.965 -13.215 28.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.263 4.263 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.185 1.185 7 C -0.380 4.380 8 H 0.101 0.899 9 N -0.358 5.358 10 C 0.012 3.988 11 C -0.106 4.106 12 H 0.106 0.894 13 C -0.135 4.135 14 C -0.166 4.166 15 C -0.006 4.006 16 N -0.298 5.298 17 C 0.317 3.683 18 O -0.396 6.396 19 C -0.027 4.027 20 N -0.119 5.119 21 C -0.134 4.134 22 C -0.066 4.066 23 N -0.033 5.033 24 C -0.188 4.188 25 C -0.149 4.149 26 N -0.226 5.226 27 C -0.085 4.085 28 C 0.036 3.964 29 H 0.071 0.929 30 C 0.047 3.953 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.254 0.746 41 H 0.253 0.747 42 H 0.264 0.736 43 H 0.222 0.778 44 H 0.015 0.985 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.557 -22.290 -12.040 26.740 hybrid contribution -0.597 2.011 -0.708 2.214 sum -9.154 -20.279 -12.748 25.643 Atomic orbital electron populations 1.70377 1.06388 1.24730 1.57018 1.25819 0.96457 1.01361 1.02617 0.85098 0.77998 0.79304 0.77155 1.21665 1.22154 1.18513 1.19408 0.91553 0.83979 1.43025 0.89890 1.44757 1.02545 1.02536 1.85946 1.21610 0.95212 0.84805 0.97203 1.21323 0.91829 0.96627 1.00861 0.89415 1.20525 1.03650 0.92580 0.96779 1.21299 0.95301 1.03547 0.96414 1.21664 0.96915 0.83033 0.98996 1.46632 1.36855 1.21593 1.24723 1.18169 0.81966 0.84897 0.83312 1.90978 1.64088 1.18913 1.65601 1.21703 0.95589 0.89793 0.95618 1.68718 1.19506 1.08347 1.15372 1.23229 0.95056 1.03514 0.91647 1.23837 0.99204 0.80755 1.02810 1.43282 1.28529 1.11043 1.20457 1.23541 1.02626 0.87290 1.05355 1.23514 0.97947 1.01184 0.92247 1.70651 1.14491 1.12361 1.25094 1.22445 1.01830 0.91231 0.93038 1.20793 0.95847 0.94342 0.85433 0.92865 1.21462 0.83289 0.90167 1.00358 0.94987 0.94131 0.96334 0.89807 0.89369 0.86311 0.93546 0.89836 0.88436 0.74640 0.74746 0.73607 0.77797 0.98519 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -65.41 10.31 21.65 0.22 -65.18 16 2 C -0.07 -4.42 5.48 84.86 0.46 -3.95 16 3 Si 0.98 50.81 29.56 68.60 2.03 52.84 16 4 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 5 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 6 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.25 -15.68 10.24 84.03 0.86 -14.82 16 8 H 0.08 4.89 7.84 -2.91 -0.02 4.86 16 9 N -0.63 -36.76 3.39 -696.56 -2.36 -39.12 16 10 C 0.14 6.06 6.65 86.70 0.58 6.64 16 11 C -0.09 -3.12 3.05 -11.42 -0.03 -3.16 16 12 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 13 C -0.10 -2.35 5.17 29.30 0.15 -2.19 16 14 C -0.13 -2.90 5.83 29.60 0.17 -2.73 16 15 C 0.12 3.13 4.78 86.30 0.41 3.54 16 16 N -0.57 -22.26 3.09 -814.65 -2.52 -24.78 16 17 C 0.53 24.19 7.06 86.77 0.61 24.80 16 18 O -0.52 -30.11 12.95 -3.93 -0.05 -30.16 16 19 C 0.14 4.84 6.66 43.69 0.29 5.13 16 20 N -0.40 -9.70 5.96 -181.37 -1.08 -10.78 16 21 C 0.01 0.08 11.01 83.92 0.92 1.01 16 22 C 0.06 0.67 11.00 83.37 0.92 1.58 16 23 N -0.36 -7.94 2.95 -347.31 -1.02 -8.97 16 24 C -0.06 -1.01 11.80 83.35 0.98 -0.03 16 25 C 0.00 0.05 11.83 83.76 0.99 1.04 16 26 N -0.51 -20.90 10.76 -189.61 -2.04 -22.94 16 27 C 0.16 5.80 7.66 135.58 1.04 6.84 16 28 C 0.14 6.24 3.18 45.38 0.14 6.38 16 29 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 30 C 0.17 10.18 4.14 86.54 0.36 10.54 16 31 H 0.24 16.52 8.31 -92.71 -0.77 15.75 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.02 0.82 6.69 -2.39 -0.02 0.81 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 36 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.25 6.99 -2.39 -0.02 1.23 16 38 H 0.08 1.89 7.84 -2.39 -0.02 1.87 16 39 H 0.10 2.64 5.32 -2.49 -0.01 2.63 16 40 H 0.24 0.34 8.06 -2.91 -0.02 0.31 16 41 H 0.24 -0.35 8.06 -2.91 -0.02 -0.38 16 42 H 0.25 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.21 4.31 8.06 -2.91 -0.02 4.29 16 44 H 0.00 -0.23 7.28 -2.39 -0.02 -0.25 16 45 H 0.05 3.59 4.41 -10.27 -0.05 3.55 16 Total: -1.00 -104.08 351.58 3.03 -101.05 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.99 Total: 7.42 kcal Atomic # 6 Polarization: 31.75 SS G_CDS: 8.87 Total: 40.62 kcal Atomic # 7 Polarization: -162.97 SS G_CDS: -8.80 Total: -171.77 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.03 Total: 52.84 kcal Total: -104.08 3.03 -101.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050143777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.463 kcal (2) G-P(sol) polarization free energy of solvation -104.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds