Wall clock time and date at job start Sat Apr 11 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48495 * 109.46926 * 273.80047 * 3 2 1 5 5 H 1.48504 * 109.46988 * 33.80286 * 3 2 1 6 6 H 1.48507 * 109.46970 * 153.80076 * 3 2 1 7 7 C 1.38809 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00324 * 339.47520 * 7 2 1 9 9 N 1.36936 * 120.00251 * 159.20087 * 7 2 1 10 10 C 1.46889 * 120.46121 * 332.22344 * 9 7 2 11 11 C 1.52861 * 109.01399 * 235.48653 * 10 9 7 12 12 C 1.52667 * 109.17751 * 307.81736 * 11 10 9 13 13 C 1.53487 * 113.62183 * 188.99131 * 12 11 10 14 14 N 1.47673 * 85.98717 * 137.71004 * 13 12 11 15 15 C 1.34770 * 134.45980 * 155.70384 * 14 13 12 16 16 O 1.21592 * 120.00429 * 179.97438 * 15 14 13 17 17 C 1.47586 * 119.99979 * 359.96627 * 15 14 13 18 18 C 1.36475 * 125.92206 * 179.71886 * 17 15 14 19 19 N 1.36187 * 107.01274 * 179.84534 * 18 17 15 20 20 C 1.36676 * 132.45082 * 180.02562 * 19 18 17 21 21 C 1.35470 * 119.10741 * 180.38019 * 20 19 18 22 22 C 1.40306 * 119.35754 * 0.02562 * 21 20 19 23 23 N 1.31140 * 120.41287 * 359.97438 * 22 21 20 24 24 C 1.34286 * 120.94262 * 0.02562 * 23 22 21 25 25 N 1.32216 * 131.65448 * 179.97438 * 24 23 22 26 26 C 1.47670 * 91.08564 * 335.68079 * 14 13 12 27 27 C 1.52672 * 113.18768 * 57.45937 * 12 11 10 28 28 C 1.46877 * 120.47030 * 152.49526 * 9 7 2 29 29 H 0.97006 * 120.00302 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58860 * 355.30874 * 10 9 7 31 31 H 1.08998 * 109.58980 * 115.74662 * 10 9 7 32 32 H 1.09000 * 109.60736 * 187.84083 * 11 10 9 33 33 H 1.08997 * 109.44503 * 67.70075 * 11 10 9 34 34 H 1.08996 * 113.78989 * 251.97385 * 13 12 11 35 35 H 1.08999 * 113.78631 * 23.44643 * 13 12 11 36 36 H 1.08000 * 126.49299 * 359.97438 * 18 17 15 37 37 H 1.08001 * 120.44648 * 0.40558 * 20 19 18 38 38 H 1.07996 * 120.32460 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.79248 * 180.02562 * 22 21 20 40 40 H 1.09004 * 113.79090 * 270.04796 * 26 14 13 41 41 H 1.08997 * 113.79057 * 138.58244 * 26 14 13 42 42 H 1.08995 * 109.53421 * 182.51763 * 27 12 11 43 43 H 1.08999 * 109.58868 * 62.33607 * 27 12 11 44 44 H 1.08996 * 109.59085 * 244.25512 * 28 9 7 45 45 H 1.08997 * 109.59172 * 4.69060 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4173 2.0928 -1.3970 5 1 1.4901 2.6281 0.7789 6 1 3.5857 1.4182 0.6182 7 6 2.0102 -1.2021 0.0005 8 1 1.5216 -2.1077 0.3289 9 7 3.3126 -1.2411 -0.4205 10 6 3.8079 -0.2653 -1.4005 11 6 4.4086 -1.0148 -2.5896 12 6 5.4268 -2.0314 -2.0793 13 6 6.2513 -2.6890 -3.1944 14 7 7.4114 -2.5140 -2.2975 15 6 8.6043 -3.1273 -2.1666 16 8 9.3870 -2.7587 -1.3122 17 6 8.9606 -4.2466 -3.0602 18 6 10.1316 -4.9471 -3.0382 19 7 10.0508 -5.8892 -4.0184 20 6 10.9192 -6.8555 -4.4430 21 6 10.5579 -7.6605 -5.4709 22 6 9.3040 -7.4838 -6.0751 23 7 8.4880 -6.5495 -5.6500 24 6 8.8313 -5.7436 -4.6322 25 7 8.1880 -4.7507 -4.0418 26 6 6.7408 -1.3973 -1.6019 27 6 4.8345 -3.0291 -1.0869 28 6 4.2324 -2.2626 0.0968 29 1 -0.4851 0.8401 -0.0004 30 1 2.9830 0.3593 -1.7432 31 1 4.5744 0.3581 -0.9402 32 1 4.9024 -0.3076 -3.2561 33 1 3.6161 -1.5325 -3.1301 34 1 5.9906 -3.7313 -3.3777 35 1 6.3080 -2.0961 -4.1072 36 1 10.9638 -4.7864 -2.3688 37 1 11.8802 -6.9760 -3.9651 38 1 11.2286 -8.4307 -5.8220 39 1 9.0087 -8.1219 -6.8949 40 1 6.9429 -0.4206 -2.0416 41 1 6.8689 -1.4131 -0.5196 42 1 5.6187 -3.6958 -0.7285 43 1 4.0555 -3.6132 -1.5769 44 1 5.0294 -1.7829 0.6648 45 1 3.6872 -2.9533 0.7400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050579094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:01 Heat of formation + Delta-G solvation = 124.080552 kcal Electronic energy + Delta-G solvation = -29354.764048 eV Core-core repulsion = 25375.524991 eV Total energy + Delta-G solvation = -3979.239057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.13099 -41.90309 -39.89881 -38.85631 -37.70252 -35.70775 -34.33709 -32.64385 -32.09725 -31.87098 -30.54590 -28.88612 -27.59742 -26.11183 -25.57025 -24.47089 -24.30068 -23.67456 -22.62193 -20.66110 -19.65385 -19.25416 -18.77825 -18.43269 -17.70954 -17.56072 -17.33369 -16.97733 -16.76291 -16.59588 -15.91999 -15.39254 -15.28385 -15.17703 -15.13846 -15.00684 -14.71224 -14.30282 -13.92761 -13.86134 -13.71548 -13.47391 -13.28862 -13.21763 -13.00879 -12.90294 -12.50737 -12.23134 -12.13394 -11.83889 -11.64917 -11.55543 -11.37228 -11.31790 -11.00850 -10.85708 -10.59309 -10.28296 -9.77746 -9.37870 -8.88614 -8.13279 -5.44899 -0.54149 -0.04632 0.84755 1.20150 1.32781 1.45026 1.54407 1.73752 2.17755 2.42506 2.44948 2.56111 3.08298 3.14048 3.30115 3.39368 3.45708 3.61296 3.77725 3.84092 3.94037 4.06657 4.09054 4.28811 4.36021 4.40074 4.50599 4.55548 4.58871 4.62105 4.68264 4.70422 4.78164 4.79695 4.82350 4.96995 5.01198 5.11256 5.13258 5.20039 5.24090 5.30466 5.47347 5.52017 5.90675 6.15937 6.32401 6.54806 6.72757 6.95789 7.00440 7.66317 8.06348 9.06723 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025646 B = 0.002454 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.507094 B =11409.029519 C =11902.834580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.036 4.036 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.314 1.314 6 H -0.260 1.260 7 C -0.247 4.247 8 H 0.048 0.952 9 N -0.618 5.618 10 C 0.121 3.879 11 C -0.109 4.109 12 C -0.078 4.078 13 C 0.136 3.864 14 N -0.624 5.624 15 C 0.615 3.385 16 O -0.573 6.573 17 C -0.008 4.008 18 C -0.003 4.003 19 N -0.404 5.404 20 C 0.101 3.899 21 C -0.185 4.185 22 C 0.187 3.813 23 N -0.486 5.486 24 C 0.362 3.638 25 N -0.480 5.480 26 C 0.117 3.883 27 C -0.095 4.095 28 C 0.149 3.851 29 H 0.261 0.739 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.224 0.776 37 H 0.221 0.779 38 H 0.220 0.780 39 H 0.224 0.776 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.033 0.967 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.194 -17.349 -15.310 37.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.231 4.231 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.243 1.243 6 H -0.184 1.184 7 C -0.376 4.376 8 H 0.066 0.934 9 N -0.342 5.342 10 C -0.003 4.003 11 C -0.148 4.148 12 C -0.079 4.079 13 C 0.014 3.986 14 N -0.356 5.356 15 C 0.404 3.596 16 O -0.453 6.453 17 C -0.141 4.141 18 C -0.139 4.139 19 N -0.081 5.081 20 C -0.028 4.028 21 C -0.207 4.207 22 C 0.000 4.000 23 N -0.200 5.200 24 C 0.011 3.989 25 N -0.205 5.205 26 C -0.004 4.004 27 C -0.134 4.134 28 C 0.024 3.976 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.240 0.760 37 H 0.237 0.763 38 H 0.236 0.764 39 H 0.240 0.760 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 28.005 -16.541 -15.210 35.906 hybrid contribution 0.950 0.595 0.918 1.449 sum 28.955 -15.946 -14.292 36.013 Atomic orbital electron populations 1.69977 1.07480 1.27167 1.55853 1.25911 0.95824 1.01018 1.00329 0.85889 0.78800 0.80017 0.77675 1.19652 1.24340 1.18441 1.18847 0.86860 0.93413 1.38521 0.93396 1.44424 1.07797 1.35102 1.46907 1.21318 0.96902 0.91997 0.90132 1.21743 0.97815 0.97698 0.97545 1.21917 0.93417 0.96425 0.96188 1.23301 0.79500 1.02235 0.93600 1.49847 1.14965 1.34092 1.36648 1.16724 0.79769 0.80976 0.82137 1.90766 1.50220 1.67290 1.37064 1.20487 0.93945 1.00664 0.98957 1.22853 1.02061 0.92655 0.96363 1.44014 1.16183 1.23612 1.24302 1.23263 0.96471 0.86484 0.96596 1.22500 0.99378 1.02480 0.96306 1.24351 0.88999 0.90135 0.96475 1.68080 1.35020 1.06830 1.10053 1.22101 0.82788 0.98078 0.95913 1.70719 1.29776 1.10024 1.09936 1.23418 0.87511 0.90755 0.98754 1.21552 0.99114 0.96521 0.96229 1.21009 0.91911 0.90473 0.94238 0.93023 0.93076 0.94502 0.88928 0.91748 0.89781 0.88180 0.75956 0.76281 0.76375 0.76012 0.87746 0.90604 0.91786 0.92094 0.94884 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.18 13.97 21.65 0.30 -60.87 16 2 C -0.04 -2.15 5.22 84.86 0.44 -1.71 16 3 Si 0.95 47.00 24.38 68.60 1.67 48.67 16 4 H -0.27 -12.47 6.65 99.48 0.66 -11.81 16 5 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 6 H -0.26 -12.34 6.65 99.48 0.66 -11.68 16 7 C -0.25 -14.24 10.01 84.03 0.84 -13.39 16 8 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 9 N -0.62 -29.33 2.74 -699.68 -1.92 -31.24 16 10 C 0.12 5.02 4.06 86.26 0.35 5.37 16 11 C -0.11 -3.51 5.24 30.44 0.16 -3.35 16 12 C -0.08 -2.37 0.77 -52.03 -0.04 -2.41 16 13 C 0.14 3.77 7.00 86.31 0.60 4.37 16 14 N -0.62 -18.87 3.44 -846.12 -2.91 -21.78 16 15 C 0.61 19.74 8.05 86.71 0.70 20.44 16 16 O -0.57 -20.75 17.60 -4.01 -0.07 -20.82 16 17 C -0.01 -0.23 6.90 40.76 0.28 0.05 16 18 C 0.00 -0.06 11.47 83.61 0.96 0.90 16 19 N -0.40 -6.72 2.93 -356.82 -1.05 -7.77 16 20 C 0.10 0.48 11.05 83.30 0.92 1.40 16 21 C -0.18 -0.10 10.06 22.13 0.22 0.12 16 22 C 0.19 1.28 11.27 85.30 0.96 2.24 16 23 N -0.49 -9.69 10.48 -197.16 -2.07 -11.75 16 24 C 0.36 8.77 8.90 261.35 2.33 11.09 16 25 N -0.48 -14.27 9.67 -188.81 -1.83 -16.10 16 26 C 0.12 3.41 7.62 86.32 0.66 4.07 16 27 C -0.10 -3.22 5.21 30.60 0.16 -3.06 16 28 C 0.15 5.95 6.38 86.42 0.55 6.51 16 29 H 0.26 15.82 8.31 -92.70 -0.77 15.04 16 30 H 0.05 2.35 4.39 -2.39 -0.01 2.34 16 31 H 0.04 1.45 7.12 -2.39 -0.02 1.44 16 32 H 0.09 2.40 8.12 -2.39 -0.02 2.38 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 2.51 7.42 -2.39 -0.02 2.49 16 35 H 0.10 2.47 8.09 -2.39 -0.02 2.45 16 36 H 0.22 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.22 -0.98 8.06 -2.91 -0.02 -1.00 16 38 H 0.22 -2.14 8.06 -2.91 -0.02 -2.16 16 39 H 0.22 -0.48 8.06 -2.91 -0.02 -0.50 16 40 H 0.10 2.66 8.07 -2.38 -0.02 2.64 16 41 H 0.08 2.36 7.41 -2.39 -0.02 2.34 16 42 H 0.06 2.07 8.01 -2.39 -0.02 2.05 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.03 1.27 7.49 -2.39 -0.02 1.25 16 45 H 0.05 2.22 7.92 -2.39 -0.02 2.20 16 Total: -1.00 -87.56 363.79 3.16 -84.40 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.93 Total: 4.63 kcal Atomic # 6 Polarization: 22.54 SS G_CDS: 10.10 Total: 32.63 kcal Atomic # 7 Polarization: -140.05 SS G_CDS: -9.47 Total: -149.51 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.07 Total: -20.82 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.67 Total: 48.67 kcal Total: -87.56 3.16 -84.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050579094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.482 kcal (2) G-P(sol) polarization free energy of solvation -87.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds