Wall clock time and date at job start Sat Apr 11 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00049 * 2 1 4 4 H 1.48500 * 109.47172 * 269.99963 * 3 2 1 5 5 H 1.48501 * 109.47310 * 29.99798 * 3 2 1 6 6 H 1.48500 * 109.47194 * 150.00006 * 3 2 1 7 7 C 1.38819 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99680 * 197.65169 * 7 2 1 9 9 N 1.36934 * 119.99999 * 17.64553 * 7 2 1 10 10 C 1.46895 * 120.46556 * 28.44945 * 9 7 2 11 11 C 1.53357 * 108.74131 * 124.38121 * 10 9 7 12 12 C 1.52557 * 109.12246 * 52.26835 * 11 10 9 13 13 C 1.52960 * 114.06896 * 75.53655 * 12 11 10 14 14 N 1.47154 * 87.85472 * 139.43873 * 13 12 11 15 15 C 1.34782 * 135.99847 * 153.33568 * 14 13 12 16 16 O 1.21451 * 119.99885 * 0.02562 * 15 14 13 17 17 C 1.48634 * 120.00127 * 180.27575 * 15 14 13 18 18 N 1.33518 * 120.60054 * 359.72778 * 17 15 14 19 19 C 1.30808 * 122.65248 * 179.97438 * 18 17 15 20 20 N 1.34058 * 123.37976 * 0.02562 * 19 18 17 21 21 H 0.97001 * 120.21496 * 180.02562 * 20 19 18 22 22 C 1.36867 * 119.57483 * 359.97438 * 20 19 18 23 23 N 1.31630 * 135.96354 * 180.02562 * 22 20 19 24 24 C 1.33525 * 110.83995 * 179.97438 * 23 22 20 25 25 C 1.36083 * 110.92404 * 0.02562 * 24 23 22 26 26 C 1.39537 * 120.60580 * 179.44886 * 17 15 14 27 27 C 1.47165 * 88.00048 * 333.59405 * 14 13 12 28 28 C 1.52561 * 113.42930 * 302.66187 * 12 11 10 29 29 C 1.46885 * 120.46171 * 208.47413 * 9 7 2 30 30 H 0.96999 * 119.99775 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58778 * 4.60900 * 10 9 7 32 32 H 1.09000 * 109.71816 * 244.23922 * 10 9 7 33 33 H 1.09001 * 109.53410 * 292.37414 * 11 10 9 34 34 H 1.08999 * 109.58620 * 172.18800 * 11 10 9 35 35 H 1.09007 * 113.48494 * 24.69169 * 13 12 11 36 36 H 1.08994 * 113.54420 * 254.20043 * 13 12 11 37 37 H 1.07993 * 118.30976 * 179.97438 * 19 18 17 38 38 H 1.07995 * 124.54038 * 180.02562 * 24 23 22 39 39 H 1.07995 * 126.71605 * 180.02562 * 25 24 23 40 40 H 1.09004 * 113.48598 * 141.15887 * 27 14 13 41 41 H 1.08991 * 113.49082 * 271.66220 * 27 14 13 42 42 H 1.09005 * 109.52591 * 177.21984 * 28 12 11 43 43 H 1.08996 * 109.52644 * 297.42450 * 28 12 11 44 44 H 1.08998 * 109.58901 * 355.37895 * 29 9 7 45 45 H 1.08996 * 109.59469 * 115.82946 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0522 -1.2243 0.2831 9 7 1.3739 -2.3600 -0.3605 10 6 0.2447 -2.3283 -1.2995 11 6 0.5541 -3.2646 -2.4740 12 6 0.9415 -4.6365 -1.9308 13 6 -0.2407 -5.4621 -1.4206 14 7 0.3854 -6.6403 -2.0412 15 6 0.3721 -7.9710 -1.8272 16 8 -0.2893 -8.4335 -0.9196 17 6 1.1712 -8.8718 -2.6985 18 7 1.9022 -8.3763 -3.6999 19 6 2.6202 -9.1316 -4.4905 20 7 2.6906 -10.4652 -4.3729 21 1 3.2386 -10.9809 -4.9849 22 6 1.9851 -11.0942 -3.3830 23 7 1.8206 -12.3370 -2.9816 24 6 0.9976 -12.3920 -1.9315 25 6 0.5695 -11.1479 -1.5839 26 6 1.1756 -10.2502 -2.4812 27 6 1.0377 -5.7277 -2.9938 28 6 2.1310 -4.5972 -0.9763 29 6 1.8105 -3.6511 0.1873 30 1 -0.4850 0.8401 -0.0004 31 1 0.1052 -1.3123 -1.6690 32 1 -0.6623 -2.6616 -0.7954 33 1 1.3799 -2.8572 -3.0572 34 1 -0.3276 -3.3595 -3.1077 35 1 -1.1921 -5.1855 -1.8752 36 1 -0.2942 -5.5204 -0.3335 37 1 3.1848 -8.6565 -5.2790 38 1 0.7103 -13.3019 -1.4258 39 1 -0.1004 -10.8984 -0.7744 40 1 2.0630 -6.0098 -3.2331 41 1 0.4378 -5.5242 -3.8808 42 1 2.3214 -5.5985 -0.5899 43 1 3.0122 -4.2368 -1.5070 44 1 2.7024 -3.5065 0.7970 45 1 1.0139 -4.0778 0.7965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050581250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:04 Heat of formation + Delta-G solvation = 136.318051 kcal Electronic energy + Delta-G solvation = -29499.812702 eV Core-core repulsion = 25521.104303 eV Total energy + Delta-G solvation = -3978.708399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19682 -40.73538 -38.96940 -38.41464 -35.92071 -35.34846 -32.49584 -30.83593 -30.65893 -29.83932 -29.30922 -27.55735 -26.26910 -25.07315 -24.11977 -23.77020 -22.38718 -21.50667 -20.96606 -19.91228 -18.70401 -18.06809 -17.98698 -17.10485 -16.64195 -16.26011 -16.10829 -16.04294 -15.44325 -14.86259 -14.55933 -14.11111 -13.84496 -13.66536 -13.53582 -13.37566 -13.18943 -13.04296 -12.67925 -12.55368 -12.34295 -11.96590 -11.84343 -11.58474 -11.42331 -11.08794 -10.90647 -10.75387 -10.46750 -10.36724 -10.13496 -10.05938 -9.89279 -9.78128 -9.61784 -9.37460 -8.93753 -8.61642 -8.46617 -8.15792 -6.67221 -5.80115 -3.22746 -0.58200 1.06535 1.82530 2.42963 2.63409 3.11686 3.36725 3.36910 3.42812 3.44189 3.45174 3.73140 4.16544 4.37660 4.48577 4.56168 4.62886 4.91121 5.09135 5.20332 5.23401 5.37772 5.50476 5.58725 5.62704 5.67261 5.71662 5.87543 5.94223 5.99914 6.06488 6.08924 6.11940 6.26782 6.28950 6.45891 6.56619 6.61671 6.65242 6.72263 6.81646 6.95618 7.11180 7.31835 7.63298 7.63714 7.70166 7.79112 8.03277 8.44855 9.20701 9.83965 10.40389 11.27985 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027751 B = 0.002400 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.721816 B =11663.302634 C =12006.283072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.123 4.123 12 C -0.079 4.079 13 C 0.115 3.885 14 N -0.619 5.619 15 C 0.587 3.413 16 O -0.520 6.520 17 C 0.207 3.793 18 N -0.510 5.510 19 C 0.349 3.651 20 N -0.519 5.519 21 H 0.428 0.572 22 C 0.253 3.747 23 N -0.519 5.519 24 C 0.060 3.940 25 C -0.194 4.194 26 C -0.155 4.155 27 C 0.114 3.886 28 C -0.105 4.105 29 C 0.146 3.854 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.221 0.779 38 H 0.168 0.832 39 H 0.153 0.847 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -18.428 -12.975 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.163 4.163 12 C -0.080 4.080 13 C -0.007 4.007 14 N -0.352 5.352 15 C 0.373 3.627 16 O -0.395 6.395 17 C 0.073 3.927 18 N -0.230 5.230 19 C 0.066 3.934 20 N -0.123 5.123 21 H 0.267 0.733 22 C -0.001 4.001 23 N -0.239 5.239 24 C -0.082 4.082 25 C -0.218 4.218 26 C -0.167 4.167 27 C -0.008 4.008 28 C -0.144 4.144 29 C 0.020 3.980 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.237 0.763 38 H 0.185 0.815 39 H 0.171 0.829 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 4.680 -18.784 -12.809 23.212 hybrid contribution 0.262 0.392 0.069 0.476 sum 4.942 -18.392 -12.740 22.913 Atomic orbital electron populations 1.70032 1.05244 1.25512 1.53821 1.25040 0.95253 0.98408 1.00917 0.86306 0.79148 0.83751 0.77663 1.21458 1.21827 1.20481 1.19195 0.92788 0.84943 1.41242 0.91732 1.44020 1.37063 1.01437 1.48739 1.20788 0.88753 0.98677 0.87335 1.22057 1.00207 0.93847 1.00149 1.21700 0.95926 0.94535 0.95867 1.23201 0.97248 0.80016 1.00229 1.49489 1.47698 1.03363 1.34616 1.17249 0.81556 0.80070 0.83795 1.90792 1.42786 1.74467 1.31458 1.21267 0.90479 0.90799 0.90193 1.68010 1.11667 1.35939 1.07407 1.24885 0.93670 0.78035 0.96763 1.41841 1.36649 1.08321 1.25515 0.73348 1.20530 0.96069 0.92381 0.91139 1.69524 1.21874 1.16783 1.15748 1.22678 0.94610 0.97806 0.93146 1.21618 1.05566 0.92059 1.02550 1.20867 1.03034 0.92391 1.00435 1.23212 0.98957 0.85414 0.93240 1.21701 0.95820 0.99227 0.97658 1.20890 0.97601 0.86904 0.92615 0.93627 0.89194 0.96344 0.91808 0.92803 0.89505 0.90034 0.76267 0.81520 0.82902 0.89474 0.89920 0.93155 0.91657 0.92671 0.96385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 11.21 55.49 0.62 -24.77 16 2 C 0.00 0.07 4.89 -17.43 -0.09 -0.02 16 3 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.25 -6.66 9.56 -15.06 -0.14 -6.80 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -14.00 2.96 -172.18 -0.51 -14.50 16 10 C 0.17 3.74 5.27 -3.64 -0.02 3.72 16 11 C -0.12 -2.03 5.31 -26.77 -0.14 -2.17 16 12 C -0.08 -1.18 0.83 -155.17 -0.13 -1.31 16 13 C 0.11 1.74 7.56 -8.22 -0.06 1.67 16 14 N -0.62 -8.96 3.46 -186.16 -0.64 -9.60 16 15 C 0.59 9.25 8.09 -11.96 -0.10 9.15 16 16 O -0.52 -9.66 16.19 5.41 0.09 -9.58 16 17 C 0.21 2.74 6.83 -82.36 -0.56 2.18 16 18 N -0.51 -4.89 8.10 -10.67 -0.09 -4.98 16 19 C 0.35 1.74 12.24 -91.01 -1.11 0.63 16 20 N -0.52 -3.01 5.32 -12.02 -0.06 -3.07 16 21 H 0.43 0.80 8.93 -40.82 -0.36 0.44 16 22 C 0.25 2.86 8.72 -154.20 -1.34 1.51 16 23 N -0.52 -6.65 11.16 -10.91 -0.12 -6.77 16 24 C 0.06 0.74 11.70 -17.59 -0.21 0.53 16 25 C -0.19 -2.68 10.25 -39.44 -0.40 -3.08 16 26 C -0.15 -2.11 6.19 -104.65 -0.65 -2.76 16 27 C 0.11 1.40 6.66 -8.37 -0.06 1.34 16 28 C -0.10 -1.71 5.26 -26.77 -0.14 -1.85 16 29 C 0.15 2.95 6.41 -3.65 -0.02 2.93 16 30 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.09 2.25 5.97 -51.93 -0.31 1.94 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.78 8.10 -51.93 -0.42 0.35 16 35 H 0.09 1.22 8.06 -51.92 -0.42 0.80 16 36 H 0.08 1.37 7.53 -51.93 -0.39 0.98 16 37 H 0.22 -0.18 8.06 -52.49 -0.42 -0.60 16 38 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.15 2.15 7.38 -52.49 -0.39 1.77 16 40 H 0.09 0.99 7.18 -51.93 -0.37 0.61 16 41 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 42 H 0.05 0.80 7.95 -51.93 -0.41 0.38 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 45 H 0.02 0.38 7.60 -51.93 -0.39 -0.02 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -35.40 366.53 -11.37 -46.77 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.97 Total: -0.77 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -5.18 Total: 5.68 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -0.80 Total: -63.71 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.40 -11.37 -46.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050581250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.088 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds