Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00049 * 2 1 4 4 H 1.48500 * 109.47172 * 269.99963 * 3 2 1 5 5 H 1.48501 * 109.47310 * 29.99798 * 3 2 1 6 6 H 1.48500 * 109.47194 * 150.00006 * 3 2 1 7 7 C 1.38819 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99680 * 197.65169 * 7 2 1 9 9 N 1.36934 * 119.99999 * 17.64553 * 7 2 1 10 10 C 1.46895 * 120.46556 * 28.44945 * 9 7 2 11 11 C 1.53357 * 108.74131 * 124.38121 * 10 9 7 12 12 C 1.52557 * 109.12246 * 52.26835 * 11 10 9 13 13 C 1.52960 * 114.06896 * 75.53655 * 12 11 10 14 14 N 1.47154 * 87.85472 * 139.43873 * 13 12 11 15 15 C 1.34782 * 135.99847 * 153.33568 * 14 13 12 16 16 O 1.21451 * 119.99885 * 0.02562 * 15 14 13 17 17 C 1.48634 * 120.00127 * 180.27575 * 15 14 13 18 18 N 1.33518 * 120.60054 * 359.72778 * 17 15 14 19 19 C 1.30808 * 122.65248 * 179.97438 * 18 17 15 20 20 N 1.34058 * 123.37976 * 0.02562 * 19 18 17 21 21 H 0.97001 * 120.21496 * 180.02562 * 20 19 18 22 22 C 1.36867 * 119.57483 * 359.97438 * 20 19 18 23 23 N 1.31630 * 135.96354 * 180.02562 * 22 20 19 24 24 C 1.33525 * 110.83995 * 179.97438 * 23 22 20 25 25 C 1.36083 * 110.92404 * 0.02562 * 24 23 22 26 26 C 1.39537 * 120.60580 * 179.44886 * 17 15 14 27 27 C 1.47165 * 88.00048 * 333.59405 * 14 13 12 28 28 C 1.52561 * 113.42930 * 302.66187 * 12 11 10 29 29 C 1.46885 * 120.46171 * 208.47413 * 9 7 2 30 30 H 0.96999 * 119.99775 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58778 * 4.60900 * 10 9 7 32 32 H 1.09000 * 109.71816 * 244.23922 * 10 9 7 33 33 H 1.09001 * 109.53410 * 292.37414 * 11 10 9 34 34 H 1.08999 * 109.58620 * 172.18800 * 11 10 9 35 35 H 1.09007 * 113.48494 * 24.69169 * 13 12 11 36 36 H 1.08994 * 113.54420 * 254.20043 * 13 12 11 37 37 H 1.07993 * 118.30976 * 179.97438 * 19 18 17 38 38 H 1.07995 * 124.54038 * 180.02562 * 24 23 22 39 39 H 1.07995 * 126.71605 * 180.02562 * 25 24 23 40 40 H 1.09004 * 113.48598 * 141.15887 * 27 14 13 41 41 H 1.08991 * 113.49082 * 271.66220 * 27 14 13 42 42 H 1.09005 * 109.52591 * 177.21984 * 28 12 11 43 43 H 1.08996 * 109.52644 * 297.42450 * 28 12 11 44 44 H 1.08998 * 109.58901 * 355.37895 * 29 9 7 45 45 H 1.08996 * 109.59469 * 115.82946 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0522 -1.2243 0.2831 9 7 1.3739 -2.3600 -0.3605 10 6 0.2447 -2.3283 -1.2995 11 6 0.5541 -3.2646 -2.4740 12 6 0.9415 -4.6365 -1.9308 13 6 -0.2407 -5.4621 -1.4206 14 7 0.3854 -6.6403 -2.0412 15 6 0.3721 -7.9710 -1.8272 16 8 -0.2893 -8.4335 -0.9196 17 6 1.1712 -8.8718 -2.6985 18 7 1.9022 -8.3763 -3.6999 19 6 2.6202 -9.1316 -4.4905 20 7 2.6906 -10.4652 -4.3729 21 1 3.2386 -10.9809 -4.9849 22 6 1.9851 -11.0942 -3.3830 23 7 1.8206 -12.3370 -2.9816 24 6 0.9976 -12.3920 -1.9315 25 6 0.5695 -11.1479 -1.5839 26 6 1.1756 -10.2502 -2.4812 27 6 1.0377 -5.7277 -2.9938 28 6 2.1310 -4.5972 -0.9763 29 6 1.8105 -3.6511 0.1873 30 1 -0.4850 0.8401 -0.0004 31 1 0.1052 -1.3123 -1.6690 32 1 -0.6623 -2.6616 -0.7954 33 1 1.3799 -2.8572 -3.0572 34 1 -0.3276 -3.3595 -3.1077 35 1 -1.1921 -5.1855 -1.8752 36 1 -0.2942 -5.5204 -0.3335 37 1 3.1848 -8.6565 -5.2790 38 1 0.7103 -13.3019 -1.4258 39 1 -0.1004 -10.8984 -0.7744 40 1 2.0630 -6.0098 -3.2331 41 1 0.4378 -5.5242 -3.8808 42 1 2.3214 -5.5985 -0.5899 43 1 3.0122 -4.2368 -1.5070 44 1 2.7024 -3.5065 0.7970 45 1 1.0139 -4.0778 0.7965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050581250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = 113.701338 kcal Electronic energy + Delta-G solvation = -29500.793437 eV Core-core repulsion = 25521.104303 eV Total energy + Delta-G solvation = -3979.689133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.97644 -41.92771 -39.78338 -39.60046 -37.55722 -36.10598 -34.24453 -32.28681 -31.59999 -31.39817 -30.22818 -28.91828 -27.46210 -26.22902 -25.59025 -24.50593 -23.93509 -22.69512 -22.19944 -20.96986 -19.60200 -19.36896 -18.97885 -18.28527 -17.82405 -17.33131 -17.12629 -17.07672 -16.76584 -16.46652 -15.64615 -15.39870 -15.26274 -15.06897 -14.88792 -14.62509 -14.22585 -14.00381 -13.95014 -13.85161 -13.51771 -13.35320 -13.05250 -12.91618 -12.82765 -12.66207 -12.54656 -12.22311 -12.01510 -11.80779 -11.74139 -11.45609 -11.24882 -11.11121 -10.94390 -10.69165 -10.45513 -9.85871 -9.68499 -9.04223 -8.61223 -7.82533 -5.28085 -1.39984 0.38650 1.26554 1.38424 1.50692 1.51713 1.54412 1.60340 2.22380 2.51275 2.55383 2.64930 2.96145 3.26578 3.39114 3.47894 3.64950 3.73559 3.87944 3.99807 4.06237 4.21463 4.27875 4.39462 4.44706 4.53424 4.60981 4.68335 4.75018 4.83430 4.86431 4.91815 4.97757 5.06940 5.16025 5.18641 5.23350 5.37258 5.39454 5.40864 5.59015 5.61227 5.70889 5.86349 5.91072 6.41006 6.45013 6.57549 6.78684 6.88798 7.21027 7.92318 8.43169 9.22872 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027751 B = 0.002400 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.721816 B =11663.302634 C =12006.283072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.259 4.259 8 H 0.064 0.936 9 N -0.607 5.607 10 C 0.174 3.826 11 C -0.105 4.105 12 C -0.079 4.079 13 C 0.108 3.892 14 N -0.617 5.617 15 C 0.577 3.423 16 O -0.564 6.564 17 C 0.208 3.792 18 N -0.525 5.525 19 C 0.382 3.618 20 N -0.499 5.499 21 H 0.451 0.549 22 C 0.257 3.743 23 N -0.538 5.538 24 C 0.055 3.945 25 C -0.227 4.227 26 C -0.193 4.193 27 C 0.134 3.866 28 C -0.089 4.089 29 C 0.143 3.857 30 H 0.249 0.751 31 H 0.057 0.943 32 H -0.006 1.006 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.292 0.708 38 H 0.187 0.813 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 -18.939 -16.864 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.196 1.196 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.330 5.330 10 C 0.048 3.952 11 C -0.144 4.144 12 C -0.080 4.080 13 C -0.014 4.014 14 N -0.349 5.349 15 C 0.365 3.635 16 O -0.442 6.442 17 C 0.072 3.928 18 N -0.245 5.245 19 C 0.101 3.899 20 N -0.104 5.104 21 H 0.295 0.705 22 C 0.002 3.998 23 N -0.259 5.259 24 C -0.087 4.087 25 C -0.251 4.251 26 C -0.205 4.205 27 C 0.013 3.987 28 C -0.128 4.128 29 C 0.017 3.983 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.012 0.988 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.307 0.693 38 H 0.204 0.796 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 7.407 -19.323 -16.764 26.632 hybrid contribution -0.525 0.605 1.273 1.504 sum 6.882 -18.718 -15.491 25.252 Atomic orbital electron populations 1.70189 1.06621 1.25767 1.55459 1.25758 0.95959 1.01365 1.01404 0.85309 0.77981 0.79714 0.77683 1.20788 1.22633 1.19630 1.19501 0.92964 0.86127 1.40387 0.91788 1.44289 1.37262 1.01862 1.49587 1.20646 0.87551 0.98218 0.88744 1.21814 1.01666 0.93069 0.97898 1.21574 0.95034 0.94488 0.96940 1.23229 0.98220 0.80952 0.98976 1.49531 1.47435 1.03052 1.34897 1.17766 0.81447 0.80516 0.83726 1.90763 1.44703 1.75312 1.33457 1.20894 0.91028 0.89863 0.91015 1.67982 1.12336 1.36955 1.07220 1.26327 0.90749 0.77288 0.95565 1.41978 1.35475 1.08802 1.24176 0.70500 1.20636 0.95922 0.91488 0.91741 1.69529 1.22628 1.17529 1.16244 1.22965 0.94429 0.98045 0.93284 1.21575 1.06878 0.93369 1.03296 1.21024 1.04748 0.92992 1.01773 1.23220 1.00524 0.82510 0.92447 1.21486 0.96831 0.98170 0.96347 1.20979 0.96689 0.86415 0.94176 0.94170 0.92504 0.98793 0.91151 0.90009 0.88299 0.92734 0.69282 0.79642 0.84910 0.87393 0.87157 0.92493 0.90625 0.93192 0.97953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 11.21 21.65 0.24 -53.93 16 2 C -0.05 -2.69 4.89 84.86 0.42 -2.28 16 3 Si 0.96 43.80 29.59 68.60 2.03 45.83 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.26 -13.86 9.56 84.04 0.80 -13.06 16 8 H 0.06 3.36 7.89 -2.91 -0.02 3.33 16 9 N -0.61 -29.21 2.96 -698.64 -2.07 -31.28 16 10 C 0.17 7.76 5.27 86.42 0.46 8.22 16 11 C -0.11 -3.26 5.31 30.57 0.16 -3.10 16 12 C -0.08 -2.20 0.83 -52.60 -0.04 -2.24 16 13 C 0.11 3.24 7.56 83.32 0.63 3.87 16 14 N -0.62 -16.95 3.46 -861.21 -2.98 -19.93 16 15 C 0.58 18.14 8.09 87.02 0.70 18.84 16 16 O -0.56 -22.13 16.19 -3.56 -0.06 -22.19 16 17 C 0.21 5.18 6.83 41.98 0.29 5.47 16 18 N -0.52 -7.73 8.10 -187.68 -1.52 -9.26 16 19 C 0.38 1.46 12.24 180.48 2.21 3.66 16 20 N -0.50 -3.41 5.32 -191.95 -1.02 -4.44 16 21 H 0.45 -0.81 8.93 -92.71 -0.83 -1.63 16 22 C 0.26 5.27 8.72 136.29 1.19 6.46 16 23 N -0.54 -13.30 11.16 -188.44 -2.10 -15.41 16 24 C 0.06 1.40 11.70 83.93 0.98 2.38 16 25 C -0.23 -6.66 10.25 22.36 0.23 -6.44 16 26 C -0.19 -5.20 6.19 -19.88 -0.12 -5.32 16 27 C 0.13 2.74 6.66 83.21 0.55 3.30 16 28 C -0.09 -2.79 5.26 30.57 0.16 -2.63 16 29 C 0.14 5.85 6.41 86.43 0.55 6.41 16 30 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.06 2.92 5.97 -2.39 -0.01 2.90 16 32 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.08 2.10 8.10 -2.39 -0.02 2.09 16 35 H 0.10 2.70 8.06 -2.38 -0.02 2.68 16 36 H 0.05 1.91 7.53 -2.39 -0.02 1.90 16 37 H 0.29 -3.15 8.06 -2.91 -0.02 -3.18 16 38 H 0.19 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.13 4.24 7.38 -2.91 -0.02 4.22 16 40 H 0.11 1.85 7.18 -2.39 -0.02 1.83 16 41 H 0.11 1.77 8.09 -2.39 -0.02 1.75 16 42 H 0.06 1.72 7.95 -2.38 -0.02 1.70 16 43 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.05 2.04 7.92 -2.39 -0.02 2.02 16 45 H 0.00 0.11 7.60 -2.39 -0.02 0.09 16 Total: -1.00 -84.39 366.53 1.90 -82.49 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 0.21 Total: 4.57 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 9.17 Total: 23.54 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -9.45 Total: -134.24 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -84.39 1.90 -82.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050581250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.188 kcal (2) G-P(sol) polarization free energy of solvation -84.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds