Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00178 * 2 1 4 4 H 1.48498 * 109.47269 * 270.00284 * 3 2 1 5 5 H 1.48500 * 109.46830 * 29.99988 * 3 2 1 6 6 H 1.48493 * 109.47189 * 149.99804 * 3 2 1 7 7 C 1.38816 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99592 * 197.65031 * 7 2 1 9 9 N 1.36936 * 119.99685 * 17.64693 * 7 2 1 10 10 C 1.46890 * 120.46152 * 28.45476 * 9 7 2 11 11 C 1.53351 * 108.74245 * 124.38610 * 10 9 7 12 12 C 1.52552 * 109.13182 * 52.25733 * 11 10 9 13 13 C 1.52963 * 114.06179 * 75.53934 * 12 11 10 14 14 N 1.47157 * 87.85298 * 139.44623 * 13 12 11 15 15 C 1.34779 * 136.00266 * 153.33909 * 14 13 12 16 16 O 1.21556 * 119.99886 * 359.97438 * 15 14 13 17 17 C 1.47800 * 120.00128 * 179.97438 * 15 14 13 18 18 N 1.32292 * 120.59153 * 0.02562 * 17 15 14 19 19 C 1.32693 * 121.18907 * 179.97438 * 18 17 15 20 20 C 1.35474 * 122.11658 * 0.02562 * 19 18 17 21 21 N 1.36230 * 120.52069 * 359.97438 * 20 19 18 22 22 C 1.36162 * 133.92657 * 179.68629 * 21 20 19 23 23 C 1.35340 * 107.14047 * 179.97438 * 22 21 20 24 24 N 1.33554 * 108.61389 * 0.33120 * 23 22 21 25 25 C 1.31852 * 109.14687 * 359.79503 * 24 23 22 26 26 C 1.47164 * 87.99875 * 333.59133 * 14 13 12 27 27 C 1.52559 * 113.42782 * 302.66979 * 12 11 10 28 28 C 1.46883 * 120.45972 * 208.46910 * 9 7 2 29 29 H 0.96999 * 119.99924 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.59515 * 4.60238 * 10 9 7 31 31 H 1.09006 * 109.58854 * 244.16026 * 10 9 7 32 32 H 1.09004 * 109.52963 * 292.35551 * 11 10 9 33 33 H 1.09006 * 109.58681 * 172.19065 * 11 10 9 34 34 H 1.08992 * 113.48873 * 24.69749 * 13 12 11 35 35 H 1.09004 * 113.54433 * 254.19857 * 13 12 11 36 36 H 1.07998 * 118.94181 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.74083 * 180.02562 * 20 19 18 38 38 H 1.08007 * 126.42611 * 0.26539 * 22 21 20 39 39 H 1.07997 * 125.68836 * 180.12443 * 23 22 21 40 40 H 1.09004 * 113.49249 * 141.15984 * 26 14 13 41 41 H 1.09000 * 113.49119 * 271.66383 * 26 14 13 42 42 H 1.09003 * 109.52538 * 177.21450 * 27 12 11 43 43 H 1.08995 * 109.52768 * 297.41993 * 27 12 11 44 44 H 1.08999 * 109.59383 * 355.38278 * 28 9 7 45 45 H 1.08995 * 109.59062 * 115.83100 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0521 -1.2242 0.2831 9 7 1.3739 -2.3600 -0.3606 10 6 0.2449 -2.3281 -1.2997 11 6 0.5542 -3.2645 -2.4740 12 6 0.9417 -4.6364 -1.9310 13 6 -0.2407 -5.4619 -1.4208 14 7 0.3855 -6.6402 -2.0414 15 6 0.3722 -7.9708 -1.8276 16 8 -0.2892 -8.4337 -0.9187 17 6 1.1616 -8.8672 -2.6981 18 7 1.8858 -8.3759 -3.6902 19 6 2.5994 -9.1696 -4.4786 20 6 2.6256 -10.5141 -4.3137 21 7 1.9084 -11.1028 -3.3162 22 6 1.7333 -12.3914 -2.9126 23 6 0.8974 -12.3659 -1.8484 24 7 0.5577 -11.0978 -1.6034 25 6 1.1562 -10.3131 -2.4778 26 6 1.0378 -5.7276 -2.9940 27 6 2.1311 -4.5971 -0.9764 28 6 1.8106 -3.6510 0.1872 29 1 -0.4850 0.8400 -0.0004 30 1 0.1052 -1.3122 -1.6691 31 1 -0.6608 -2.6631 -0.7938 32 1 1.3799 -2.8569 -3.0573 33 1 -0.3276 -3.3593 -3.1079 34 1 -1.1919 -5.1854 -1.8754 35 1 -0.2941 -5.5204 -0.3337 36 1 3.1773 -8.7298 -5.2780 37 1 3.2202 -11.1238 -4.9777 38 1 2.1815 -13.2687 -3.3554 39 1 0.5588 -13.2277 -1.2925 40 1 2.0632 -6.0096 -3.2333 41 1 0.4379 -5.5240 -3.8810 42 1 2.3214 -5.5984 -0.5901 43 1 3.0123 -4.2366 -1.5070 44 1 2.7025 -3.5065 0.7969 45 1 1.0140 -4.0778 0.7964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050670143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = 148.997572 kcal Electronic energy + Delta-G solvation = -29526.279219 eV Core-core repulsion = 25548.120645 eV Total energy + Delta-G solvation = -3978.158574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.35349 -40.73178 -38.93786 -38.07013 -35.84794 -34.62943 -32.45444 -31.09230 -30.57024 -29.97861 -29.59348 -27.41838 -26.15739 -25.19532 -24.03205 -23.63497 -22.41848 -22.26064 -20.98655 -19.94192 -18.94386 -17.98986 -17.78542 -16.65293 -16.50338 -16.21650 -15.99414 -15.89931 -15.44289 -14.85418 -14.76397 -14.18984 -14.09315 -13.90719 -13.81000 -13.49471 -13.36524 -13.07335 -12.94559 -12.53997 -12.27575 -11.89457 -11.77521 -11.50433 -11.36787 -11.04694 -10.71930 -10.67118 -10.49552 -10.41215 -10.28000 -10.01917 -9.95712 -9.72565 -9.56234 -9.38111 -9.31723 -8.65832 -8.46444 -8.42231 -6.62688 -5.76149 -3.18605 -0.29590 0.80646 1.88058 2.39176 2.59324 2.71672 3.39633 3.44139 3.46907 3.47949 3.56635 3.61663 3.84793 4.16049 4.51246 4.52949 4.65229 4.73527 4.87557 4.94036 5.14562 5.26157 5.29727 5.41743 5.57306 5.62480 5.66857 5.70722 5.77302 5.97633 6.03086 6.10770 6.13940 6.16147 6.29787 6.32745 6.52073 6.62320 6.68230 6.71072 6.87325 7.01370 7.06332 7.37105 7.45612 7.68317 7.79955 7.82897 8.16537 8.48942 9.24794 9.88208 10.44783 11.31915 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028460 B = 0.002395 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.612338 B =11686.049312 C =12006.679608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.171 3.829 11 C -0.123 4.123 12 C -0.079 4.079 13 C 0.118 3.882 14 N -0.621 5.621 15 C 0.593 3.407 16 O -0.503 6.503 17 C 0.192 3.808 18 N -0.420 5.420 19 C 0.030 3.970 20 C 0.030 3.970 21 N -0.357 5.357 22 C -0.083 4.083 23 C 0.032 3.968 24 N -0.434 5.434 25 C 0.191 3.809 26 C 0.113 3.887 27 C -0.105 4.105 28 C 0.147 3.853 29 H 0.253 0.747 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.185 0.815 37 H 0.176 0.824 38 H 0.191 0.809 39 H 0.189 0.811 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -22.730 -13.059 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.163 4.163 12 C -0.080 4.080 13 C -0.004 4.004 14 N -0.355 5.355 15 C 0.379 3.621 16 O -0.376 6.376 17 C 0.026 3.974 18 N -0.135 5.135 19 C -0.110 4.110 20 C -0.095 4.095 21 N -0.032 5.032 22 C -0.216 4.216 23 C -0.120 4.120 24 N -0.153 5.153 25 C -0.057 4.057 26 C -0.009 4.009 27 C -0.144 4.144 28 C 0.020 3.980 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.202 0.798 37 H 0.193 0.807 38 H 0.208 0.792 39 H 0.206 0.794 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.499 -21.997 -12.175 25.541 hybrid contribution 1.081 -0.632 -0.819 1.496 sum 5.580 -22.628 -12.994 26.684 Atomic orbital electron populations 1.70031 1.05228 1.25465 1.53890 1.25035 0.95248 0.98375 1.00986 0.86311 0.79144 0.83803 0.77645 1.21482 1.21850 1.20500 1.19196 0.92777 0.84966 1.41138 0.91757 1.44024 1.37093 1.01438 1.48741 1.20796 0.88763 0.98644 0.87335 1.22056 1.00203 0.93870 1.00137 1.21695 0.95973 0.94490 0.95876 1.23179 0.97154 0.79815 1.00227 1.49399 1.48099 1.03152 1.34836 1.16640 0.81687 0.79968 0.83842 1.90906 1.41839 1.74112 1.30741 1.22210 0.95370 0.86190 0.93647 1.68275 1.04692 1.37983 1.02596 1.22181 1.00058 0.88255 1.00491 1.22769 0.97962 0.96213 0.92597 1.42910 1.30386 1.08451 1.21404 1.22804 1.09801 0.85237 1.03765 1.22936 0.97458 0.95353 0.96284 1.70696 1.21964 1.00982 1.21682 1.22528 0.97441 0.93233 0.92478 1.23209 0.98918 0.85527 0.93276 1.21701 0.95824 0.99265 0.97645 1.20891 0.97597 0.86876 0.92628 0.93655 0.89204 0.96309 0.91849 0.92791 0.89523 0.89995 0.79768 0.80722 0.79219 0.79391 0.89622 0.89953 0.93088 0.91702 0.92700 0.96318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 11.21 55.49 0.62 -25.11 16 2 C 0.00 0.06 4.89 -17.43 -0.09 -0.03 16 3 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.74 9.56 -15.06 -0.14 -6.89 16 8 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.31 2.96 -172.18 -0.51 -14.81 16 10 C 0.17 3.84 5.27 -3.65 -0.02 3.82 16 11 C -0.12 -2.11 5.31 -26.78 -0.14 -2.26 16 12 C -0.08 -1.25 0.83 -155.17 -0.13 -1.38 16 13 C 0.12 1.87 7.56 -8.22 -0.06 1.81 16 14 N -0.62 -9.63 3.46 -186.49 -0.65 -10.28 16 15 C 0.59 10.10 8.06 -12.35 -0.10 10.00 16 16 O -0.50 -10.24 17.00 5.32 0.09 -10.15 16 17 C 0.19 2.76 6.97 -80.54 -0.56 2.20 16 18 N -0.42 -4.87 8.21 -8.68 -0.07 -4.94 16 19 C 0.03 0.23 11.01 -18.17 -0.20 0.03 16 20 C 0.03 0.20 11.00 -16.59 -0.18 0.01 16 21 N -0.36 -3.52 2.95 -61.12 -0.18 -3.70 16 22 C -0.08 -0.64 11.80 -16.66 -0.20 -0.84 16 23 C 0.03 0.32 11.83 -17.84 -0.21 0.11 16 24 N -0.43 -6.52 10.74 -11.29 -0.12 -6.64 16 25 C 0.19 2.68 7.66 -153.99 -1.18 1.50 16 26 C 0.11 1.51 6.65 -8.38 -0.06 1.46 16 27 C -0.11 -1.80 5.26 -26.77 -0.14 -1.94 16 28 C 0.15 3.04 6.41 -3.65 -0.02 3.01 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.09 2.29 5.97 -51.93 -0.31 1.98 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 35 H 0.08 1.43 7.53 -51.93 -0.39 1.04 16 36 H 0.19 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.18 0.36 8.06 -52.49 -0.42 -0.07 16 38 H 0.19 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.09 1.09 7.19 -51.93 -0.37 0.72 16 41 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.05 0.84 7.95 -51.93 -0.41 0.43 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 45 H 0.02 0.40 7.60 -51.93 -0.39 0.01 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -35.23 368.78 -9.78 -45.01 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.06 Total: -1.95 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -3.43 Total: 10.64 kcal Atomic # 7 Polarization: -64.57 SS G_CDS: -0.91 Total: -65.48 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.23 -9.78 -45.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050670143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.005 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds