Wall clock time and date at job start Sat Apr 11 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 119.99926 * 2 1 4 4 H 1.48505 * 109.47203 * 267.67219 * 3 2 1 5 5 H 1.48501 * 109.47391 * 27.66876 * 3 2 1 6 6 H 1.48498 * 109.47332 * 147.67214 * 3 2 1 7 7 C 1.38813 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99633 * 338.00873 * 7 2 1 9 9 N 1.36930 * 120.00064 * 158.00405 * 7 2 1 10 10 C 1.46894 * 120.46247 * 149.70578 * 9 7 2 11 11 C 1.53355 * 108.74476 * 124.38732 * 10 9 7 12 12 C 1.52554 * 109.12526 * 52.25919 * 11 10 9 13 13 C 1.52966 * 114.06113 * 75.53997 * 12 11 10 14 14 N 1.47165 * 87.85345 * 139.43863 * 13 12 11 15 15 C 1.34773 * 135.99806 * 153.33428 * 14 13 12 16 16 O 1.21549 * 120.00359 * 0.02562 * 15 14 13 17 17 C 1.47879 * 119.99728 * 180.02562 * 15 14 13 18 18 C 1.39903 * 125.69322 * 180.02562 * 17 15 14 19 19 C 1.38583 * 107.59292 * 179.97438 * 18 17 15 20 20 N 1.34112 * 132.33896 * 179.71282 * 19 18 17 21 21 C 1.31134 * 120.83843 * 179.85967 * 20 19 18 22 22 C 1.40336 * 120.29600 * 0.46317 * 21 20 19 23 23 C 1.35454 * 119.47221 * 359.76889 * 22 21 20 24 24 N 1.36677 * 119.13356 * 359.97438 * 23 22 21 25 25 N 1.32376 * 125.69341 * 359.97438 * 17 15 14 26 26 C 1.47173 * 87.99743 * 333.59600 * 14 13 12 27 27 C 1.52552 * 113.43445 * 302.67279 * 12 11 10 28 28 C 1.46885 * 120.46387 * 329.72615 * 9 7 2 29 29 H 0.96999 * 119.99673 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58906 * 4.60860 * 10 9 7 31 31 H 1.09003 * 109.59188 * 244.17217 * 10 9 7 32 32 H 1.09003 * 109.52924 * 292.36631 * 11 10 9 33 33 H 1.09003 * 109.58443 * 172.19237 * 11 10 9 34 34 H 1.09003 * 113.48600 * 24.69789 * 13 12 11 35 35 H 1.08998 * 113.48975 * 254.18741 * 13 12 11 36 36 H 1.08001 * 126.20267 * 0.02562 * 18 17 15 37 37 H 1.08000 * 119.84639 * 180.23136 * 21 20 19 38 38 H 1.08003 * 120.26806 * 179.75178 * 22 21 20 39 39 H 1.07997 * 120.43591 * 179.97438 * 23 22 21 40 40 H 1.08994 * 113.48678 * 141.15514 * 26 14 13 41 41 H 1.09006 * 113.48517 * 271.66120 * 26 14 13 42 42 H 1.08996 * 109.52703 * 177.21578 * 27 12 11 43 43 H 1.09004 * 109.52562 * 297.42736 * 27 12 11 44 44 H 1.09000 * 109.58929 * 355.38588 * 28 9 7 45 45 H 1.09003 * 109.58912 * 115.82264 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5470 2.0180 -1.3990 5 1 1.4239 2.6664 0.6501 6 1 3.5223 1.4549 0.7487 7 6 2.0104 -1.2021 -0.0005 8 1 1.5293 -2.1035 0.3493 9 7 3.3049 -1.2451 -0.4447 10 6 4.2506 -2.2225 0.1103 11 6 4.8404 -3.0463 -1.0410 12 6 5.3934 -2.0990 -2.1012 13 6 6.7231 -1.4454 -1.7210 14 7 7.1578 -1.6494 -3.1121 15 6 8.0259 -1.0540 -3.9538 16 8 8.6722 -0.0943 -3.5815 17 6 8.1920 -1.5685 -5.3302 18 6 9.0555 -1.0450 -6.2986 19 6 8.9115 -1.8095 -7.4454 20 7 9.4885 -1.7423 -8.6542 21 6 9.1801 -2.6021 -9.5951 22 6 8.2291 -3.6053 -9.3532 23 6 7.6353 -3.6818 -8.1382 24 7 7.9775 -2.7774 -7.1722 25 7 7.5493 -2.6017 -5.8514 26 6 6.2238 -2.7846 -3.1831 27 6 4.3540 -1.1238 -2.6452 28 6 3.7675 -0.3141 -1.4824 29 1 -0.4849 0.8401 0.0004 30 1 3.7290 -2.8833 0.8027 31 1 5.0514 -1.7000 0.6335 32 1 4.0609 -3.6692 -1.4800 33 1 5.6433 -3.6794 -0.6635 34 1 7.2991 -2.0218 -0.9970 35 1 6.6278 -0.3952 -1.4452 36 1 9.7152 -0.1990 -6.1745 37 1 9.6573 -2.5354 -10.5616 38 1 7.9725 -4.3108 -10.1297 39 1 6.9011 -4.4473 -7.9353 40 1 5.7078 -2.8634 -4.1398 41 1 6.6627 -3.7289 -2.8608 42 1 4.8264 -0.4480 -3.3581 43 1 3.5576 -1.6792 -3.1406 44 1 2.9276 0.2822 -1.8391 45 1 4.5346 0.3413 -1.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050705306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:18 Heat of formation + Delta-G solvation = 161.829295 kcal Electronic energy + Delta-G solvation = -29368.433731 eV Core-core repulsion = 25390.831582 eV Total energy + Delta-G solvation = -3977.602149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.70321 -40.92239 -38.91533 -37.85922 -36.19974 -34.46871 -32.62555 -31.72381 -30.65632 -30.51703 -29.53017 -27.73196 -26.38699 -25.17390 -24.34045 -23.79910 -22.93090 -22.43631 -21.02472 -19.58849 -18.51594 -18.22295 -17.99738 -16.97581 -16.60279 -16.48340 -16.11371 -15.74341 -15.60951 -15.16006 -14.86984 -14.32004 -14.01595 -13.96981 -13.77666 -13.57939 -13.47573 -13.17197 -12.93446 -12.84257 -12.46258 -12.12894 -11.82584 -11.75766 -11.73430 -11.66705 -11.51384 -10.75424 -10.59818 -10.46660 -10.43933 -10.31494 -9.99532 -9.96486 -9.84603 -9.67022 -9.47946 -8.75373 -8.55434 -8.37421 -6.93523 -5.96618 -3.32859 0.02548 0.30890 1.50830 1.53618 2.62498 2.90857 3.18513 3.34533 3.41221 3.50622 3.54454 3.57871 3.90271 4.23424 4.39754 4.44860 4.54376 4.74910 4.85029 4.89911 4.98843 5.03118 5.12705 5.23457 5.37655 5.38224 5.43563 5.51085 5.56006 5.69934 5.75284 5.85768 5.86809 5.91836 6.03768 6.05729 6.16686 6.29890 6.35216 6.45444 6.62759 6.68009 6.71663 6.82560 6.92222 7.13198 7.59037 7.96961 7.99384 8.33830 8.95419 9.72348 10.11301 11.19364 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.002579 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.511345 B =10856.079089 C =10955.157816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.878 3.122 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.262 4.262 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.148 3.852 11 C -0.116 4.116 12 C -0.080 4.080 13 C 0.115 3.885 14 N -0.627 5.627 15 C 0.622 3.378 16 O -0.522 6.522 17 C 0.084 3.916 18 C -0.201 4.201 19 C 0.248 3.752 20 N -0.457 5.457 21 C 0.179 3.821 22 C -0.223 4.223 23 C 0.163 3.837 24 N -0.308 5.308 25 N -0.269 5.269 26 C 0.110 3.890 27 C -0.106 4.106 28 C 0.130 3.870 29 H 0.263 0.737 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.173 0.827 37 H 0.182 0.818 38 H 0.170 0.830 39 H 0.182 0.818 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.766 -11.286 -18.725 28.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.708 3.292 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.390 4.390 8 H 0.101 0.899 9 N -0.328 5.328 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.081 4.081 13 C -0.007 4.007 14 N -0.360 5.360 15 C 0.408 3.592 16 O -0.397 6.397 17 C -0.076 4.076 18 C -0.232 4.232 19 C 0.022 3.978 20 N -0.167 5.167 21 C -0.007 4.007 22 C -0.247 4.247 23 C 0.030 3.970 24 N -0.081 5.081 25 N -0.099 5.099 26 C -0.012 4.012 27 C -0.146 4.146 28 C 0.004 3.996 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.190 0.810 37 H 0.199 0.801 38 H 0.187 0.813 39 H 0.199 0.801 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 17.821 -10.655 -18.183 27.600 hybrid contribution 0.451 0.811 -0.323 0.983 sum 18.273 -9.844 -18.505 27.807 Atomic orbital electron populations 1.69860 1.05811 1.26632 1.52511 1.25344 0.95167 0.97585 0.99137 0.87039 0.79989 0.84738 0.77468 1.21351 1.23056 1.19708 1.18876 0.85801 0.94650 1.39654 0.89869 1.44324 1.08855 1.38661 1.40926 1.20938 0.92298 0.91494 0.93044 1.21870 0.99957 0.97055 0.96690 1.21686 0.93494 0.96977 0.95908 1.23195 0.92576 1.02747 0.82185 1.49418 1.39485 1.32605 1.14499 1.16252 0.78703 0.82630 0.81606 1.90833 1.45964 1.26912 1.75969 1.22050 0.95878 0.94099 0.95574 1.20976 1.07559 1.05599 0.89087 1.20527 0.91652 0.91677 0.93948 1.68261 1.24577 1.25570 0.98318 1.23462 0.91581 0.87759 0.97924 1.21882 1.01641 1.03933 0.97215 1.22131 0.97534 0.91578 0.85790 1.47248 1.28352 1.21839 1.10668 1.78249 1.23348 1.20960 0.87319 1.23209 0.87757 0.89695 1.00567 1.21715 0.96740 0.97396 0.98714 1.21339 0.97636 0.92170 0.88464 0.92759 0.91588 0.95873 0.91048 0.92176 0.89342 0.89917 0.80973 0.80113 0.81277 0.80087 0.89757 0.89655 0.92768 0.90957 0.90624 0.95913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.53 13.97 55.49 0.78 -26.76 16 2 C 0.03 0.77 5.17 -17.43 -0.09 0.68 16 3 Si 0.88 22.45 24.56 -169.99 -4.18 18.28 16 4 H -0.29 -7.09 6.44 56.52 0.36 -6.73 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.26 -7.13 9.97 -15.06 -0.15 -7.28 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 N -0.60 -13.80 2.68 -172.18 -0.46 -14.27 16 10 C 0.15 2.70 6.42 -3.64 -0.02 2.68 16 11 C -0.12 -1.66 5.31 -26.78 -0.14 -1.81 16 12 C -0.08 -1.16 0.83 -155.17 -0.13 -1.29 16 13 C 0.11 1.65 7.57 -8.20 -0.06 1.59 16 14 N -0.63 -9.24 3.46 -186.39 -0.65 -9.89 16 15 C 0.62 10.09 8.08 -12.32 -0.10 10.00 16 16 O -0.52 -9.87 17.66 5.32 0.09 -9.78 16 17 C 0.08 1.22 7.03 -83.06 -0.58 0.63 16 18 C -0.20 -2.73 10.65 -38.83 -0.41 -3.15 16 19 C 0.25 2.99 7.90 -155.42 -1.23 1.77 16 20 N -0.46 -4.56 10.48 -12.23 -0.13 -4.69 16 21 C 0.18 0.96 11.27 -17.06 -0.19 0.76 16 22 C -0.22 -0.82 10.05 -39.79 -0.40 -1.22 16 23 C 0.16 1.02 11.30 -16.39 -0.19 0.84 16 24 N -0.31 -3.37 3.90 -12.20 -0.05 -3.42 16 25 N -0.27 -3.54 11.15 33.23 0.37 -3.17 16 26 C 0.11 1.40 6.88 -8.36 -0.06 1.34 16 27 C -0.11 -1.86 5.25 -26.78 -0.14 -2.00 16 28 C 0.13 2.78 4.14 -3.65 -0.02 2.77 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.07 1.20 7.92 -51.93 -0.41 0.79 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.09 1.10 8.06 -51.93 -0.42 0.68 16 35 H 0.08 1.33 7.53 -51.93 -0.39 0.93 16 36 H 0.17 2.21 8.06 -52.49 -0.42 1.78 16 37 H 0.18 0.24 8.06 -52.49 -0.42 -0.19 16 38 H 0.17 -0.06 8.06 -52.48 -0.42 -0.48 16 39 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 40 H 0.08 1.08 7.44 -51.93 -0.39 0.69 16 41 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 42 H 0.05 0.93 7.95 -51.93 -0.41 0.52 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.08 1.81 4.66 -51.93 -0.24 1.57 16 45 H 0.02 0.49 6.92 -51.93 -0.36 0.13 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -35.82 366.04 -8.63 -44.45 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.02 Total: -2.58 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -3.91 Total: 6.31 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.14 Total: -62.19 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.18 Total: 18.28 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.82 -8.63 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050705306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.281 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds