Wall clock time and date at job start Sat Apr 11 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 119.99926 * 2 1 4 4 H 1.48505 * 109.47203 * 267.67219 * 3 2 1 5 5 H 1.48501 * 109.47391 * 27.66876 * 3 2 1 6 6 H 1.48498 * 109.47332 * 147.67214 * 3 2 1 7 7 C 1.38813 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99633 * 338.00873 * 7 2 1 9 9 N 1.36930 * 120.00064 * 158.00405 * 7 2 1 10 10 C 1.46894 * 120.46247 * 149.70578 * 9 7 2 11 11 C 1.53355 * 108.74476 * 124.38732 * 10 9 7 12 12 C 1.52554 * 109.12526 * 52.25919 * 11 10 9 13 13 C 1.52966 * 114.06113 * 75.53997 * 12 11 10 14 14 N 1.47165 * 87.85345 * 139.43863 * 13 12 11 15 15 C 1.34773 * 135.99806 * 153.33428 * 14 13 12 16 16 O 1.21549 * 120.00359 * 0.02562 * 15 14 13 17 17 C 1.47879 * 119.99728 * 180.02562 * 15 14 13 18 18 C 1.39903 * 125.69322 * 180.02562 * 17 15 14 19 19 C 1.38583 * 107.59292 * 179.97438 * 18 17 15 20 20 N 1.34112 * 132.33896 * 179.71282 * 19 18 17 21 21 C 1.31134 * 120.83843 * 179.85967 * 20 19 18 22 22 C 1.40336 * 120.29600 * 0.46317 * 21 20 19 23 23 C 1.35454 * 119.47221 * 359.76889 * 22 21 20 24 24 N 1.36677 * 119.13356 * 359.97438 * 23 22 21 25 25 N 1.32376 * 125.69341 * 359.97438 * 17 15 14 26 26 C 1.47173 * 87.99743 * 333.59600 * 14 13 12 27 27 C 1.52552 * 113.43445 * 302.67279 * 12 11 10 28 28 C 1.46885 * 120.46387 * 329.72615 * 9 7 2 29 29 H 0.96999 * 119.99673 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58906 * 4.60860 * 10 9 7 31 31 H 1.09003 * 109.59188 * 244.17217 * 10 9 7 32 32 H 1.09003 * 109.52924 * 292.36631 * 11 10 9 33 33 H 1.09003 * 109.58443 * 172.19237 * 11 10 9 34 34 H 1.09003 * 113.48600 * 24.69789 * 13 12 11 35 35 H 1.08998 * 113.48975 * 254.18741 * 13 12 11 36 36 H 1.08001 * 126.20267 * 0.02562 * 18 17 15 37 37 H 1.08000 * 119.84639 * 180.23136 * 21 20 19 38 38 H 1.08003 * 120.26806 * 179.75178 * 22 21 20 39 39 H 1.07997 * 120.43591 * 179.97438 * 23 22 21 40 40 H 1.08994 * 113.48678 * 141.15514 * 26 14 13 41 41 H 1.09006 * 113.48517 * 271.66120 * 26 14 13 42 42 H 1.08996 * 109.52703 * 177.21578 * 27 12 11 43 43 H 1.09004 * 109.52562 * 297.42736 * 27 12 11 44 44 H 1.09000 * 109.58929 * 355.38588 * 28 9 7 45 45 H 1.09003 * 109.58912 * 115.82264 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5470 2.0180 -1.3990 5 1 1.4239 2.6664 0.6501 6 1 3.5223 1.4549 0.7487 7 6 2.0104 -1.2021 -0.0005 8 1 1.5293 -2.1035 0.3493 9 7 3.3049 -1.2451 -0.4447 10 6 4.2506 -2.2225 0.1103 11 6 4.8404 -3.0463 -1.0410 12 6 5.3934 -2.0990 -2.1012 13 6 6.7231 -1.4454 -1.7210 14 7 7.1578 -1.6494 -3.1121 15 6 8.0259 -1.0540 -3.9538 16 8 8.6722 -0.0943 -3.5815 17 6 8.1920 -1.5685 -5.3302 18 6 9.0555 -1.0450 -6.2986 19 6 8.9115 -1.8095 -7.4454 20 7 9.4885 -1.7423 -8.6542 21 6 9.1801 -2.6021 -9.5951 22 6 8.2291 -3.6053 -9.3532 23 6 7.6353 -3.6818 -8.1382 24 7 7.9775 -2.7774 -7.1722 25 7 7.5493 -2.6017 -5.8514 26 6 6.2238 -2.7846 -3.1831 27 6 4.3540 -1.1238 -2.6452 28 6 3.7675 -0.3141 -1.4824 29 1 -0.4849 0.8401 0.0004 30 1 3.7290 -2.8833 0.8027 31 1 5.0514 -1.7000 0.6335 32 1 4.0609 -3.6692 -1.4800 33 1 5.6433 -3.6794 -0.6635 34 1 7.2991 -2.0218 -0.9970 35 1 6.6278 -0.3952 -1.4452 36 1 9.7152 -0.1990 -6.1745 37 1 9.6573 -2.5354 -10.5616 38 1 7.9725 -4.3108 -10.1297 39 1 6.9011 -4.4473 -7.9353 40 1 5.7078 -2.8634 -4.1398 41 1 6.6627 -3.7289 -2.8608 42 1 4.8264 -0.4480 -3.3581 43 1 3.5576 -1.6792 -3.1406 44 1 2.9276 0.2822 -1.8391 45 1 4.5346 0.3413 -1.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050705306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:18 Heat of formation + Delta-G solvation = 136.892468 kcal Electronic energy + Delta-G solvation = -29369.515073 eV Core-core repulsion = 25390.831582 eV Total energy + Delta-G solvation = -3978.683490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.44519 -42.10006 -39.97415 -38.76354 -37.79695 -35.11602 -34.41389 -32.80824 -32.06219 -31.96756 -30.29418 -29.08543 -27.50748 -26.11066 -25.57462 -24.82286 -24.45886 -23.36752 -22.54362 -20.60890 -19.71890 -19.20657 -18.88291 -18.34001 -17.53089 -17.45377 -17.33751 -17.05928 -16.71713 -16.44691 -15.92805 -15.42038 -15.39129 -15.27806 -15.12438 -14.83060 -14.56430 -14.31398 -13.98350 -13.87539 -13.69484 -13.60232 -13.37855 -13.29063 -12.98332 -12.57908 -12.49826 -12.38719 -12.23828 -12.12406 -11.76668 -11.69244 -11.40870 -11.25876 -11.08285 -10.93133 -10.67571 -10.63447 -9.88599 -9.15411 -8.85786 -8.17997 -5.48071 -0.55188 -0.36357 0.63401 0.81754 1.28298 1.38859 1.46888 1.57497 2.04339 2.37466 2.40835 2.70994 2.81033 3.04385 3.20674 3.38256 3.48940 3.56707 3.74762 3.87134 3.98205 4.09669 4.15033 4.28846 4.35019 4.38817 4.45147 4.46123 4.54969 4.59010 4.60389 4.69263 4.75689 4.79593 4.88674 4.98721 5.01584 5.04894 5.05955 5.17534 5.22094 5.28799 5.35968 5.54282 5.91600 6.02637 6.15899 6.44891 6.54222 6.80866 6.95567 7.64919 8.07271 9.02076 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.002579 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.511345 B =10856.079089 C =10955.157816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.028 4.028 3 Si 0.932 3.068 4 H -0.279 1.279 5 H -0.310 1.310 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.058 0.942 9 N -0.617 5.617 10 C 0.139 3.861 11 C -0.101 4.101 12 C -0.079 4.079 13 C 0.112 3.888 14 N -0.629 5.629 15 C 0.618 3.382 16 O -0.564 6.564 17 C 0.065 3.935 18 C -0.239 4.239 19 C 0.249 3.751 20 N -0.496 5.496 21 C 0.189 3.811 22 C -0.188 4.188 23 C 0.136 3.864 24 N -0.308 5.308 25 N -0.283 5.283 26 C 0.126 3.874 27 C -0.096 4.096 28 C 0.128 3.872 29 H 0.260 0.740 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.161 0.839 37 H 0.227 0.773 38 H 0.224 0.776 39 H 0.213 0.787 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.045 0.955 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.809 -14.344 -21.671 32.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.223 4.223 3 Si 0.762 3.238 4 H -0.206 1.206 5 H -0.239 1.239 6 H -0.192 1.192 7 C -0.371 4.371 8 H 0.076 0.924 9 N -0.342 5.342 10 C 0.015 3.985 11 C -0.140 4.140 12 C -0.080 4.080 13 C -0.009 4.009 14 N -0.361 5.361 15 C 0.405 3.595 16 O -0.442 6.442 17 C -0.093 4.093 18 C -0.271 4.271 19 C 0.021 3.979 20 N -0.209 5.209 21 C 0.007 3.993 22 C -0.211 4.211 23 C 0.004 3.996 24 N -0.081 5.081 25 N -0.114 5.114 26 C 0.005 3.995 27 C -0.135 4.135 28 C 0.002 3.998 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.179 0.821 37 H 0.243 0.757 38 H 0.241 0.759 39 H 0.230 0.770 40 H 0.103 0.897 41 H 0.136 0.864 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 19.889 -13.776 -21.154 32.138 hybrid contribution -0.145 1.561 0.307 1.598 sum 19.743 -12.215 -20.847 31.203 Atomic orbital electron populations 1.69967 1.07220 1.27025 1.55650 1.25865 0.95651 1.00371 1.00437 0.86141 0.78670 0.81373 0.77646 1.20615 1.23891 1.19235 1.18870 0.87533 0.93420 1.37282 0.92423 1.44474 1.08244 1.39768 1.41677 1.21198 0.91667 0.90910 0.94718 1.21741 1.01022 0.96485 0.94772 1.21539 0.92738 0.96753 0.96953 1.23323 0.92756 1.02033 0.82822 1.49501 1.39124 1.33003 1.14489 1.16531 0.78362 0.82161 0.82399 1.90787 1.47740 1.28718 1.76974 1.21717 0.97232 0.95350 0.94954 1.20953 1.08920 1.06802 0.90457 1.20534 0.91634 0.91431 0.94320 1.68371 1.26112 1.28051 0.98359 1.24466 0.90505 0.86109 0.98248 1.22575 0.98631 1.02943 0.96978 1.23065 0.99002 0.91774 0.85739 1.47448 1.27853 1.22285 1.10517 1.78076 1.23864 1.20743 0.88722 1.23225 0.86552 0.90007 0.99757 1.21517 0.97419 0.97578 0.96986 1.21274 0.96573 0.92390 0.89518 0.93063 0.91872 0.94623 0.91250 0.87821 0.86391 0.92056 0.82107 0.75676 0.75945 0.77040 0.89745 0.86413 0.92845 0.91422 0.93621 0.95905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.92 13.97 21.65 0.30 -59.62 16 2 C -0.03 -1.64 5.17 84.86 0.44 -1.20 16 3 Si 0.93 47.77 24.56 68.60 1.68 49.45 16 4 H -0.28 -13.81 6.44 99.48 0.64 -13.17 16 5 H -0.31 -16.14 7.11 99.48 0.71 -15.44 16 6 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.24 -13.40 9.97 84.03 0.84 -12.56 16 8 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 9 N -0.62 -28.05 2.68 -698.65 -1.87 -29.93 16 10 C 0.14 4.82 6.42 86.42 0.56 5.38 16 11 C -0.10 -2.56 5.31 30.57 0.16 -2.40 16 12 C -0.08 -2.12 0.83 -52.61 -0.04 -2.16 16 13 C 0.11 3.03 7.57 83.33 0.63 3.66 16 14 N -0.63 -17.92 3.46 -861.89 -2.98 -20.90 16 15 C 0.62 20.57 8.08 86.80 0.70 21.27 16 16 O -0.56 -22.42 17.66 -3.87 -0.07 -22.49 16 17 C 0.07 1.95 7.03 42.02 0.30 2.25 16 18 C -0.24 -6.90 10.65 22.76 0.24 -6.66 16 19 C 0.25 5.91 7.90 133.00 1.05 6.96 16 20 N -0.50 -9.02 10.48 -192.59 -2.02 -11.04 16 21 C 0.19 1.18 11.27 85.31 0.96 2.14 16 22 C -0.19 -0.34 10.05 22.14 0.22 -0.11 16 23 C 0.14 1.17 11.30 83.29 0.94 2.11 16 24 N -0.31 -6.23 3.90 -192.50 -0.75 -6.99 16 25 N -0.28 -7.25 11.15 -48.78 -0.54 -7.80 16 26 C 0.13 2.85 6.88 83.22 0.57 3.42 16 27 C -0.10 -3.30 5.25 30.56 0.16 -3.14 16 28 C 0.13 5.49 4.14 86.42 0.36 5.85 16 29 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.06 2.21 7.92 -2.39 -0.02 2.19 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.10 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.12 2.51 8.06 -2.39 -0.02 2.49 16 35 H 0.06 1.93 7.53 -2.39 -0.02 1.91 16 36 H 0.16 4.66 8.06 -2.91 -0.02 4.63 16 37 H 0.23 -0.77 8.06 -2.91 -0.02 -0.79 16 38 H 0.22 -1.94 8.06 -2.91 -0.02 -1.97 16 39 H 0.21 0.36 8.06 -2.91 -0.02 0.33 16 40 H 0.08 1.96 7.44 -2.39 -0.02 1.95 16 41 H 0.12 1.99 8.09 -2.38 -0.02 1.97 16 42 H 0.05 1.84 7.95 -2.39 -0.02 1.82 16 43 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.05 2.23 4.66 -2.39 -0.01 2.21 16 45 H 0.02 0.99 6.92 -2.39 -0.02 0.97 16 Total: -1.00 -85.29 366.04 2.78 -82.51 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 0.95 Total: 1.99 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 8.09 Total: 24.81 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -7.87 Total: -136.27 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.07 Total: -22.49 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.68 Total: 49.45 kcal Total: -85.29 2.78 -82.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050705306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.401 kcal (2) G-P(sol) polarization free energy of solvation -85.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds