Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00020 * 2 1 4 4 H 1.48506 * 109.47199 * 239.99962 * 3 2 1 5 5 H 1.48503 * 109.47226 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47540 * 120.00001 * 3 2 1 7 7 C 1.38816 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00310 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99656 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.65105 * 359.97438 * 9 7 2 11 11 C 1.54911 * 104.83312 * 155.90718 * 10 9 7 12 12 C 1.55154 * 101.58115 * 37.00806 * 11 10 9 13 13 H 1.09007 * 110.71485 * 83.03826 * 12 11 10 14 14 C 1.50692 * 110.72206 * 206.13347 * 12 11 10 15 15 N 1.30840 * 125.89701 * 59.98177 * 14 12 11 16 16 N 1.40084 * 108.20476 * 180.02562 * 15 14 12 17 17 H 0.97002 * 126.04023 * 179.97438 * 16 15 14 18 18 C 1.34953 * 107.92945 * 359.75687 * 16 15 14 19 19 C 1.35323 * 107.73998 * 0.38944 * 18 16 15 20 20 C 1.50703 * 126.03779 * 179.87466 * 19 18 16 21 21 N 1.46505 * 109.47064 * 259.68767 * 20 19 18 22 22 C 1.34771 * 119.99622 * 179.97438 * 21 20 19 23 23 O 1.21511 * 120.00421 * 0.02562 * 22 21 20 24 24 C 1.48159 * 119.99585 * 180.02562 * 22 21 20 25 25 C 1.39817 * 120.92134 * 359.72170 * 24 22 21 26 26 C 1.38144 * 118.99717 * 179.75633 * 25 24 22 27 27 N 1.31818 * 120.90137 * 0.53036 * 26 25 24 28 28 C 1.31810 * 122.04184 * 359.74225 * 27 26 25 29 29 C 1.38149 * 120.90226 * 359.97438 * 28 27 26 30 30 C 1.47024 * 125.64664 * 180.02562 * 9 7 2 31 31 H 0.96996 * 120.00111 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.36371 * 37.06745 * 10 9 7 33 33 H 1.08997 * 110.36579 * 274.75119 * 10 9 7 34 34 H 1.09008 * 111.00089 * 278.93907 * 11 10 9 35 35 H 1.08997 * 111.03904 * 155.10193 * 11 10 9 36 36 H 1.07992 * 126.13610 * 180.23708 * 18 16 15 37 37 H 1.09002 * 109.47152 * 139.68850 * 20 19 18 38 38 H 1.09001 * 109.46980 * 19.68950 * 20 19 18 39 39 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 40 40 H 1.07995 * 120.49939 * 359.97438 * 25 24 22 41 41 H 1.08001 * 119.55421 * 180.27682 * 26 25 24 42 42 H 1.08001 * 119.54954 * 179.97438 * 28 27 26 43 43 H 1.07997 * 120.50381 * 180.02562 * 29 28 27 44 44 H 1.09003 * 109.88267 * 61.61029 * 30 9 7 45 45 H 1.08997 * 109.88243 * 300.43957 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1415 -2.5332 0.0005 11 6 -0.4020 -3.9324 -0.6112 12 6 0.7785 -4.7524 -0.0270 13 1 0.5454 -5.1006 0.9793 14 6 1.1174 -5.9135 -0.9258 15 7 1.4977 -5.8312 -2.1750 16 7 1.7139 -7.1301 -2.6531 17 1 2.0018 -7.3681 -3.5483 18 6 1.4555 -7.9915 -1.6470 19 6 1.0793 -7.2654 -0.5688 20 6 0.6937 -7.8157 0.7801 21 7 -0.7664 -7.8398 0.8984 22 6 -1.3434 -8.2967 2.0274 23 8 -0.6528 -8.6882 2.9474 24 6 -2.8200 -8.3216 2.1469 25 6 -3.6330 -7.8705 1.1027 26 6 -5.0053 -7.9164 1.2546 27 7 -5.5484 -8.3672 2.3679 28 6 -4.8186 -8.7966 3.3781 29 6 -3.4389 -8.7915 3.3092 30 6 1.9319 -3.7274 -0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5997 -1.7588 -0.6147 33 1 -0.5265 -2.4868 1.0192 34 1 -0.3531 -3.8981 -1.6996 35 1 -1.3591 -4.3332 -0.2776 36 1 1.5325 -9.0677 -1.6944 37 1 1.1113 -7.1832 1.5635 38 1 1.0835 -8.8283 0.8843 39 1 -1.3177 -7.5277 0.1640 40 1 -3.1948 -7.4952 0.1898 41 1 -5.6418 -7.5743 0.4520 42 1 -5.3060 -9.1573 4.2718 43 1 -2.8472 -9.1452 4.1406 44 1 2.5288 -3.8642 0.9012 45 1 2.5579 -3.8510 -0.8843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070392435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = 107.657645 kcal Electronic energy + Delta-G solvation = -28869.737699 eV Core-core repulsion = 24889.786491 eV Total energy + Delta-G solvation = -3979.951208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43817 -40.73968 -39.14187 -37.30835 -35.25941 -33.22482 -32.97633 -31.64097 -31.26013 -30.61275 -29.14544 -27.48508 -26.45710 -24.66163 -24.39080 -23.61287 -22.07836 -20.93145 -20.37414 -20.10968 -18.85422 -18.63315 -17.72777 -16.89256 -16.80206 -16.01555 -15.65465 -15.55408 -15.41749 -14.97596 -14.55323 -14.47810 -14.23361 -14.10808 -14.00951 -13.63654 -13.56829 -12.97359 -12.78538 -12.42989 -12.06891 -11.99520 -11.83386 -11.55413 -11.06280 -10.82151 -10.76694 -10.59639 -10.51412 -10.20254 -10.13070 -10.06015 -9.80919 -9.76746 -9.52386 -9.49193 -9.25794 -9.16774 -8.70754 -8.59585 -6.77104 -5.60243 -3.01114 0.42901 0.77386 1.75861 2.48715 2.68251 2.81713 3.17847 3.44179 3.47998 3.49431 3.58130 4.10885 4.30820 4.45652 4.51883 4.60397 4.64299 4.65165 4.76167 5.02065 5.17451 5.20728 5.34068 5.43050 5.49156 5.52642 5.54379 5.62035 5.72318 5.75079 5.89628 5.92451 6.01403 6.17447 6.28220 6.38667 6.49212 6.58442 6.69232 6.75775 6.96983 7.20231 7.26378 7.55674 7.58661 7.67475 7.72934 7.89680 7.93222 8.41174 9.27406 9.88234 10.53328 11.43854 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.002954 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.799705 B = 9475.423562 C =11155.870696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.219 4.219 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.153 3.847 11 C -0.130 4.130 12 C -0.029 4.029 13 H 0.087 0.913 14 C 0.121 3.879 15 N -0.276 5.276 16 N -0.480 5.480 17 H 0.439 0.561 18 C 0.077 3.923 19 C -0.266 4.266 20 C 0.202 3.798 21 N -0.713 5.713 22 C 0.556 3.444 23 O -0.532 6.532 24 C -0.085 4.085 25 C -0.140 4.140 26 C 0.097 3.903 27 N -0.471 5.471 28 C 0.095 3.905 29 C -0.116 4.116 30 C 0.148 3.852 31 H 0.252 0.748 32 H 0.108 0.892 33 H 0.012 0.988 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.175 0.825 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.402 0.598 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.148 0.852 44 H 0.021 0.979 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.108 -22.599 -1.404 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.028 3.972 11 C -0.169 4.169 12 C -0.050 4.050 13 H 0.105 0.895 14 C -0.047 4.047 15 N -0.097 5.097 16 N -0.185 5.185 17 H 0.283 0.717 18 C -0.072 4.072 19 C -0.279 4.279 20 C 0.079 3.921 21 N -0.365 5.365 22 C 0.342 3.658 23 O -0.409 6.409 24 C -0.096 4.096 25 C -0.161 4.161 26 C -0.060 4.060 27 N -0.181 5.181 28 C -0.062 4.062 29 C -0.137 4.137 30 C 0.021 3.979 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.192 0.808 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.238 0.762 40 H 0.158 0.842 41 H 0.180 0.820 42 H 0.180 0.820 43 H 0.166 0.834 44 H 0.039 0.961 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.238 -21.877 -1.663 22.810 hybrid contribution 1.232 0.232 -0.299 1.289 sum -5.006 -21.645 -1.962 22.303 Atomic orbital electron populations 1.69775 1.04844 1.24779 1.57825 1.24763 0.95724 0.97623 1.02597 0.86156 0.78394 0.83111 0.77857 1.21234 1.21592 1.21257 1.19030 0.90476 0.82451 1.42815 0.90606 1.44453 1.01904 0.99623 1.86854 1.21935 0.84786 0.92353 0.98127 1.23071 0.94901 0.98406 1.00544 1.20767 0.98375 0.90219 0.95652 0.89463 1.22284 0.96023 0.94293 0.92124 1.77569 1.22582 0.97347 1.12219 1.46400 1.54601 1.04704 1.12831 0.71731 1.22371 0.99455 0.96899 0.88505 1.19912 1.17831 0.92895 0.97223 1.19436 0.78787 1.00767 0.93110 1.46093 1.08348 1.64518 1.17500 1.18168 0.87013 0.77972 0.82611 1.90787 1.64127 1.47351 1.38596 1.20422 0.93715 0.99953 0.95517 1.22392 0.95391 0.99027 0.99241 1.22792 0.92500 0.95315 0.95359 1.67577 1.41463 1.08460 1.00577 1.22830 0.90409 0.95744 0.97232 1.22336 0.96131 0.97408 0.97831 1.21273 0.93059 0.85340 0.98185 0.93748 0.87485 0.96996 0.91609 0.92550 0.80788 0.90137 0.90734 0.76239 0.84236 0.82010 0.82005 0.83402 0.96103 0.95157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.09 55.49 0.56 -26.59 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.78 3.39 -170.07 -0.58 -16.36 16 10 C 0.15 3.74 5.89 -2.53 -0.01 3.72 16 11 C -0.13 -2.46 6.52 -24.58 -0.16 -2.62 16 12 C -0.03 -0.51 3.36 -89.94 -0.30 -0.82 16 13 H 0.09 1.46 7.25 -51.92 -0.38 1.08 16 14 C 0.12 1.81 5.78 -82.41 -0.48 1.33 16 15 N -0.28 -4.25 12.31 33.67 0.41 -3.84 16 16 N -0.48 -4.93 7.36 30.45 0.22 -4.71 16 17 H 0.44 3.03 8.96 -182.61 -1.64 1.39 16 18 C 0.08 0.68 11.90 -17.22 -0.20 0.48 16 19 C -0.27 -3.02 5.47 -105.05 -0.57 -3.59 16 20 C 0.20 2.16 5.68 -5.19 -0.03 2.13 16 21 N -0.71 -7.20 5.51 -62.33 -0.34 -7.54 16 22 C 0.56 6.55 7.80 -12.19 -0.10 6.45 16 23 O -0.53 -7.93 16.45 5.36 0.09 -7.84 16 24 C -0.08 -0.86 5.91 -104.64 -0.62 -1.48 16 25 C -0.14 -1.17 9.62 -39.03 -0.38 -1.55 16 26 C 0.10 0.83 11.17 -17.59 -0.20 0.63 16 27 N -0.47 -4.71 10.34 -13.30 -0.14 -4.85 16 28 C 0.09 0.82 11.17 -17.59 -0.20 0.63 16 29 C -0.12 -1.10 9.68 -39.02 -0.38 -1.48 16 30 C 0.15 3.23 6.83 -3.06 -0.02 3.20 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 1.30 7.99 -51.92 -0.41 0.89 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.08 1.00 7.67 -51.93 -0.40 0.60 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.40 3.46 6.61 -40.82 -0.27 3.19 16 40 H 0.14 0.86 6.54 -52.49 -0.34 0.52 16 41 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.15 1.30 7.74 -52.49 -0.41 0.89 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.03 0.69 7.55 -51.93 -0.39 0.30 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -35.97 377.92 -10.04 -46.01 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.05 Total: 2.42 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -3.89 Total: 0.21 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.14 Total: -63.88 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.97 -10.04 -46.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070392435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.666 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds