Wall clock time and date at job start Sat Apr 11 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00020 * 2 1 4 4 H 1.48506 * 109.47199 * 239.99962 * 3 2 1 5 5 H 1.48503 * 109.47226 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47540 * 120.00001 * 3 2 1 7 7 C 1.38816 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00310 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99656 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.65105 * 359.97438 * 9 7 2 11 11 C 1.54911 * 104.83312 * 155.90718 * 10 9 7 12 12 C 1.55154 * 101.58115 * 37.00806 * 11 10 9 13 13 H 1.09007 * 110.71485 * 83.03826 * 12 11 10 14 14 C 1.50692 * 110.72206 * 206.13347 * 12 11 10 15 15 N 1.30840 * 125.89701 * 59.98177 * 14 12 11 16 16 N 1.40084 * 108.20476 * 180.02562 * 15 14 12 17 17 H 0.97002 * 126.04023 * 179.97438 * 16 15 14 18 18 C 1.34953 * 107.92945 * 359.75687 * 16 15 14 19 19 C 1.35323 * 107.73998 * 0.38944 * 18 16 15 20 20 C 1.50703 * 126.03779 * 179.87466 * 19 18 16 21 21 N 1.46505 * 109.47064 * 259.68767 * 20 19 18 22 22 C 1.34771 * 119.99622 * 179.97438 * 21 20 19 23 23 O 1.21511 * 120.00421 * 0.02562 * 22 21 20 24 24 C 1.48159 * 119.99585 * 180.02562 * 22 21 20 25 25 C 1.39817 * 120.92134 * 359.72170 * 24 22 21 26 26 C 1.38144 * 118.99717 * 179.75633 * 25 24 22 27 27 N 1.31818 * 120.90137 * 0.53036 * 26 25 24 28 28 C 1.31810 * 122.04184 * 359.74225 * 27 26 25 29 29 C 1.38149 * 120.90226 * 359.97438 * 28 27 26 30 30 C 1.47024 * 125.64664 * 180.02562 * 9 7 2 31 31 H 0.96996 * 120.00111 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.36371 * 37.06745 * 10 9 7 33 33 H 1.08997 * 110.36579 * 274.75119 * 10 9 7 34 34 H 1.09008 * 111.00089 * 278.93907 * 11 10 9 35 35 H 1.08997 * 111.03904 * 155.10193 * 11 10 9 36 36 H 1.07992 * 126.13610 * 180.23708 * 18 16 15 37 37 H 1.09002 * 109.47152 * 139.68850 * 20 19 18 38 38 H 1.09001 * 109.46980 * 19.68950 * 20 19 18 39 39 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 40 40 H 1.07995 * 120.49939 * 359.97438 * 25 24 22 41 41 H 1.08001 * 119.55421 * 180.27682 * 26 25 24 42 42 H 1.08001 * 119.54954 * 179.97438 * 28 27 26 43 43 H 1.07997 * 120.50381 * 180.02562 * 29 28 27 44 44 H 1.09003 * 109.88267 * 61.61029 * 30 9 7 45 45 H 1.08997 * 109.88243 * 300.43957 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1415 -2.5332 0.0005 11 6 -0.4020 -3.9324 -0.6112 12 6 0.7785 -4.7524 -0.0270 13 1 0.5454 -5.1006 0.9793 14 6 1.1174 -5.9135 -0.9258 15 7 1.4977 -5.8312 -2.1750 16 7 1.7139 -7.1301 -2.6531 17 1 2.0018 -7.3681 -3.5483 18 6 1.4555 -7.9915 -1.6470 19 6 1.0793 -7.2654 -0.5688 20 6 0.6937 -7.8157 0.7801 21 7 -0.7664 -7.8398 0.8984 22 6 -1.3434 -8.2967 2.0274 23 8 -0.6528 -8.6882 2.9474 24 6 -2.8200 -8.3216 2.1469 25 6 -3.6330 -7.8705 1.1027 26 6 -5.0053 -7.9164 1.2546 27 7 -5.5484 -8.3672 2.3679 28 6 -4.8186 -8.7966 3.3781 29 6 -3.4389 -8.7915 3.3092 30 6 1.9319 -3.7274 -0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5997 -1.7588 -0.6147 33 1 -0.5265 -2.4868 1.0192 34 1 -0.3531 -3.8981 -1.6996 35 1 -1.3591 -4.3332 -0.2776 36 1 1.5325 -9.0677 -1.6944 37 1 1.1113 -7.1832 1.5635 38 1 1.0835 -8.8283 0.8843 39 1 -1.3177 -7.5277 0.1640 40 1 -3.1948 -7.4952 0.1898 41 1 -5.6418 -7.5743 0.4520 42 1 -5.3060 -9.1573 4.2718 43 1 -2.8472 -9.1452 4.1406 44 1 2.5288 -3.8642 0.9012 45 1 2.5579 -3.8510 -0.8843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070392435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:32 Heat of formation + Delta-G solvation = 81.757050 kcal Electronic energy + Delta-G solvation = -28870.860833 eV Core-core repulsion = 24889.786491 eV Total energy + Delta-G solvation = -3981.074342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.37762 -41.48567 -39.96409 -39.03118 -36.16624 -34.91550 -33.82914 -32.75928 -32.25194 -31.49492 -30.92287 -29.13386 -27.28236 -26.63490 -25.12660 -24.27691 -23.41977 -22.05876 -21.74163 -21.33707 -20.06991 -19.52383 -18.85642 -18.52423 -17.65058 -16.88911 -16.66239 -16.46678 -16.43404 -16.25075 -16.12457 -15.74685 -15.39005 -15.01677 -14.77948 -14.67811 -14.39333 -14.36952 -14.03151 -13.79618 -13.56487 -13.40787 -13.21850 -12.94594 -12.68963 -12.63454 -12.33070 -12.05620 -11.90512 -11.73041 -11.64541 -11.46200 -11.18979 -10.95569 -10.73662 -10.51355 -10.29739 -10.16003 -10.10417 -9.57973 -8.87600 -7.76777 -5.20991 -0.30108 0.13539 0.95965 1.44971 1.47820 1.49164 1.55555 1.85467 2.02373 2.33616 2.50399 2.89124 3.31925 3.53384 3.55272 3.57068 3.75020 3.82926 3.86438 3.99584 4.02557 4.11504 4.13638 4.17022 4.34708 4.53711 4.57925 4.67619 4.68995 4.74523 4.84560 4.85551 4.89451 5.03797 5.04983 5.08550 5.13031 5.32313 5.36303 5.45950 5.56416 5.64836 5.66347 5.81278 6.31682 6.46654 6.50783 6.77221 6.93790 7.09892 7.11590 7.78415 8.42599 9.24854 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.002954 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.799705 B = 9475.423562 C =11155.870696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.065 4.065 3 Si 0.981 3.019 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.624 5.624 10 C 0.154 3.846 11 C -0.110 4.110 12 C -0.011 4.011 13 H 0.095 0.905 14 C 0.105 3.895 15 N -0.324 5.324 16 N -0.465 5.465 17 H 0.455 0.545 18 C 0.110 3.890 19 C -0.274 4.274 20 C 0.207 3.793 21 N -0.701 5.701 22 C 0.556 3.444 23 O -0.570 6.570 24 C -0.101 4.101 25 C -0.134 4.134 26 C 0.091 3.909 27 N -0.493 5.493 28 C 0.092 3.908 29 C -0.126 4.126 30 C 0.145 3.855 31 H 0.248 0.752 32 H 0.073 0.927 33 H -0.010 1.010 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.226 0.774 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.411 0.589 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.186 0.814 43 H 0.148 0.852 44 H 0.018 0.982 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 -24.759 -2.553 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.350 5.350 10 C 0.029 3.971 11 C -0.149 4.149 12 C -0.032 4.032 13 H 0.113 0.887 14 C -0.062 4.062 15 N -0.147 5.147 16 N -0.173 5.173 17 H 0.301 0.699 18 C -0.040 4.040 19 C -0.286 4.286 20 C 0.083 3.917 21 N -0.353 5.353 22 C 0.343 3.657 23 O -0.451 6.451 24 C -0.113 4.113 25 C -0.155 4.155 26 C -0.065 4.065 27 N -0.202 5.202 28 C -0.064 4.064 29 C -0.146 4.146 30 C 0.019 3.981 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.008 0.992 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.243 0.757 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.248 0.752 40 H 0.180 0.820 41 H 0.204 0.796 42 H 0.203 0.797 43 H 0.166 0.834 44 H 0.036 0.964 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -6.323 -24.050 -2.851 25.030 hybrid contribution 1.293 0.847 0.006 1.546 sum -5.030 -23.203 -2.845 23.912 Atomic orbital electron populations 1.70034 1.06086 1.25104 1.58408 1.25615 0.96701 1.00851 1.02590 0.85126 0.77171 0.78754 0.78107 1.20420 1.21596 1.20498 1.19391 0.90898 0.83920 1.42920 0.90636 1.44763 1.02854 1.00650 1.86770 1.21734 0.83922 0.94842 0.96558 1.22834 0.97230 0.95261 0.99621 1.20469 0.95651 0.90169 0.96884 0.88684 1.21856 0.97643 0.94660 0.92020 1.77464 1.24017 1.00474 1.12719 1.46369 1.53558 1.03383 1.13940 0.69852 1.23049 0.95794 0.98634 0.86529 1.19878 1.19058 0.91419 0.98250 1.19364 0.78921 1.01202 0.92190 1.46017 1.08343 1.63647 1.17280 1.18407 0.87573 0.77333 0.82352 1.90764 1.65059 1.49304 1.39927 1.20448 0.92989 1.01250 0.96579 1.22605 0.95243 0.98164 0.99449 1.23258 0.92983 0.94684 0.95586 1.67629 1.42143 1.09125 1.01343 1.23193 0.90147 0.95234 0.97825 1.22450 0.96611 0.97698 0.97889 1.21376 0.94585 0.84793 0.97312 0.94257 0.90881 0.99180 0.92419 0.89217 0.75726 0.92314 0.88989 0.75171 0.81990 0.79579 0.79700 0.83432 0.96417 0.96163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.43 10.09 21.65 0.22 -57.22 16 2 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 3 Si 0.98 46.86 29.55 68.60 2.03 48.88 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.24 -14.22 10.27 84.03 0.86 -13.36 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -33.81 3.39 -691.97 -2.35 -36.16 16 10 C 0.15 7.81 5.89 86.85 0.51 8.32 16 11 C -0.11 -4.15 6.52 31.99 0.21 -3.94 16 12 C -0.01 -0.38 3.36 -10.35 -0.03 -0.42 16 13 H 0.09 3.13 7.25 -2.38 -0.02 3.11 16 14 C 0.11 2.99 5.78 43.10 0.25 3.23 16 15 N -0.32 -9.46 12.31 -47.39 -0.58 -10.05 16 16 N -0.46 -7.99 7.36 -57.59 -0.42 -8.41 16 17 H 0.45 4.65 8.96 -213.33 -1.91 2.74 16 18 C 0.11 1.44 11.90 83.54 0.99 2.43 16 19 C -0.27 -5.40 5.47 -20.14 -0.11 -5.51 16 20 C 0.21 3.96 5.68 85.63 0.49 4.44 16 21 N -0.70 -12.66 5.51 -469.40 -2.58 -15.25 16 22 C 0.56 12.48 7.80 86.88 0.68 13.15 16 23 O -0.57 -16.87 16.45 -3.75 -0.06 -16.93 16 24 C -0.10 -1.94 5.91 -19.88 -0.12 -2.06 16 25 C -0.13 -1.96 9.62 22.63 0.22 -1.75 16 26 C 0.09 1.37 11.17 84.67 0.95 2.32 16 27 N -0.49 -9.12 10.34 -196.01 -2.03 -11.14 16 28 C 0.09 1.50 11.17 84.67 0.95 2.45 16 29 C -0.13 -2.30 9.68 22.63 0.22 -2.08 16 30 C 0.15 6.47 6.83 86.73 0.59 7.07 16 31 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.07 4.21 5.87 -2.39 -0.01 4.19 16 33 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.06 2.27 7.99 -2.38 -0.02 2.26 16 35 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.23 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.06 1.41 7.67 -2.39 -0.02 1.39 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.41 5.88 6.61 -92.71 -0.61 5.27 16 40 H 0.16 1.50 6.54 -2.91 -0.02 1.49 16 41 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.15 2.61 7.74 -2.91 -0.02 2.59 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.02 0.94 7.55 -2.39 -0.02 0.93 16 Total: -1.00 -81.98 377.92 -0.14 -82.12 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -1.47 Total: 13.18 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 7.11 Total: 10.97 kcal Atomic # 7 Polarization: -130.48 SS G_CDS: -7.75 Total: -138.22 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.06 Total: -16.93 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -81.98 -0.14 -82.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070392435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.877 kcal (2) G-P(sol) polarization free energy of solvation -81.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds