Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99647 * 2 1 4 4 H 1.48506 * 109.47226 * 270.00090 * 3 2 1 5 5 H 1.48495 * 109.47178 * 30.00020 * 3 2 1 6 6 H 1.48501 * 109.46990 * 150.00414 * 3 2 1 7 7 C 1.38810 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00277 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99987 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00163 * 179.97438 * 9 7 2 11 11 H 1.08990 * 112.88134 * 336.34393 * 10 9 7 12 12 C 1.53954 * 113.74258 * 107.76672 * 10 9 7 13 13 C 1.53949 * 87.29765 * 89.75349 * 12 10 9 14 14 H 1.09006 * 113.65852 * 270.26107 * 13 12 10 15 15 N 1.46496 * 113.66648 * 139.20229 * 13 12 10 16 16 C 1.34775 * 120.00265 * 107.80955 * 15 13 12 17 17 O 1.21592 * 119.99610 * 0.02562 * 16 15 13 18 18 C 1.47498 * 120.00291 * 179.97438 * 16 15 13 19 19 C 1.36888 * 120.61356 * 180.02562 * 18 16 15 20 20 C 1.40129 * 119.25951 * 179.97438 * 19 18 16 21 21 N 1.31138 * 120.46516 * 359.97438 * 20 19 18 22 22 C 1.33710 * 121.18751 * 0.02562 * 21 20 19 23 23 C 1.39059 * 132.56034 * 180.02562 * 22 21 20 24 24 C 1.38509 * 107.66783 * 179.36819 * 23 22 21 25 25 N 1.31529 * 109.03545 * 0.51792 * 24 23 22 26 26 N 1.37290 * 120.62956 * 359.74706 * 22 21 20 27 27 C 1.52905 * 113.66427 * 204.99179 * 10 9 7 28 28 C 1.52917 * 121.13340 * 36.05518 * 27 10 9 29 29 C 1.53957 * 86.77928 * 150.61497 * 28 27 10 30 30 C 1.52909 * 121.13655 * 144.61414 * 27 10 9 31 31 H 0.96993 * 119.99922 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00200 * 359.97438 * 9 7 2 33 33 H 1.09009 * 113.57655 * 204.35380 * 12 10 9 34 34 H 1.08998 * 113.58395 * 335.14220 * 12 10 9 35 35 H 0.97001 * 119.99450 * 287.81478 * 15 13 12 36 36 H 1.08002 * 120.36597 * 359.95679 * 19 18 16 37 37 H 1.08001 * 119.76916 * 180.02562 * 20 19 18 38 38 H 1.07999 * 126.16919 * 359.95875 * 23 22 21 39 39 H 1.07995 * 125.48227 * 180.02562 * 24 23 22 40 40 H 1.08997 * 113.66031 * 265.08631 * 28 27 10 41 41 H 1.09002 * 113.66187 * 36.15037 * 28 27 10 42 42 H 1.09001 * 113.57949 * 89.86751 * 29 28 27 43 43 H 1.08996 * 113.58143 * 220.66411 * 29 28 27 44 44 H 1.09001 * 113.66026 * 323.85782 * 30 27 10 45 45 H 1.08998 * 113.65932 * 94.90900 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5275 -3.2978 0.4025 12 6 4.7951 -2.7923 -1.3418 13 6 6.0286 -2.0393 -0.8112 14 1 6.0227 -0.9737 -1.0406 15 7 7.3002 -2.6876 -1.1411 16 6 8.1131 -2.1442 -2.0685 17 8 7.7913 -1.1155 -2.6312 18 6 9.3937 -2.7967 -2.4002 19 6 10.2291 -2.2553 -3.3398 20 6 11.4391 -2.8986 -3.6324 21 7 11.7696 -4.0067 -3.0139 22 6 10.9675 -4.5513 -2.0931 23 6 11.0771 -5.6933 -1.3073 24 6 9.9465 -5.7654 -0.5104 25 7 9.1650 -4.7427 -0.7810 26 7 9.7733 -3.9579 -1.7667 27 6 5.5182 -2.3677 0.5922 28 6 5.8116 -1.4455 1.7762 29 6 6.9187 -2.4418 2.1661 30 6 6.1202 -3.5151 1.4042 31 1 -0.4850 0.8400 0.0004 32 1 3.8647 -0.3621 0.0004 33 1 4.9684 -3.8570 -1.4988 34 1 4.3240 -2.3090 -2.1977 35 1 7.5570 -3.5082 -0.6919 36 1 9.9584 -1.3427 -3.8500 37 1 12.1046 -2.4784 -4.3720 38 1 11.9003 -6.3925 -1.3102 39 1 9.7365 -6.5412 0.2110 40 1 6.1883 -0.4652 1.4842 41 1 4.9983 -1.3902 2.4998 42 1 7.8859 -2.2169 1.7166 43 1 6.9823 -2.6252 3.2387 44 1 5.3935 -4.0413 2.0231 45 1 6.7432 -4.1880 0.8150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078644296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = 158.474859 kcal Electronic energy + Delta-G solvation = -29925.270745 eV Core-core repulsion = 25947.523137 eV Total energy + Delta-G solvation = -3977.747608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.79131 -40.83642 -39.35529 -38.28709 -35.27547 -34.68851 -34.12026 -32.41460 -31.48038 -30.26779 -29.57662 -26.50962 -25.66881 -24.61549 -24.25399 -23.77481 -22.92110 -21.98156 -20.91068 -20.22324 -18.97105 -18.50476 -17.79489 -17.48494 -16.95645 -16.63785 -16.17980 -15.86161 -15.37290 -15.00584 -14.90087 -14.76473 -14.42350 -13.98582 -13.93843 -13.42967 -13.11903 -13.07733 -12.86368 -12.57461 -12.31042 -12.16479 -12.11093 -11.74142 -11.67821 -11.57456 -11.11492 -10.95213 -10.81190 -10.70570 -10.32693 -10.25112 -10.06745 -10.00949 -9.99291 -9.66805 -9.55985 -8.91512 -8.89737 -8.42051 -7.31874 -5.81145 -3.17578 -0.33003 0.36854 1.45755 2.01053 2.54333 2.70398 3.05862 3.35982 3.36562 3.40386 3.44807 3.59957 4.07709 4.40056 4.54064 4.55972 4.56035 4.63535 4.78368 4.84452 4.94487 4.98619 5.05227 5.15518 5.29488 5.32177 5.49620 5.53027 5.54056 5.69271 5.75608 5.85464 5.86871 5.96908 5.99318 6.03185 6.08179 6.19261 6.28566 6.42406 6.51524 6.58987 6.64109 6.85720 6.88806 7.07093 7.37422 7.91601 7.95475 8.38234 9.15571 9.87972 10.06848 11.36729 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.003098 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.276801 B = 9034.773441 C = 9837.520740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.093 0.907 9 N -0.725 5.725 10 C 0.193 3.807 11 H 0.079 0.921 12 C -0.180 4.180 13 C 0.143 3.857 14 H 0.115 0.885 15 N -0.690 5.690 16 C 0.552 3.448 17 O -0.516 6.516 18 C 0.146 3.854 19 C -0.155 4.155 20 C 0.179 3.821 21 N -0.449 5.449 22 C 0.256 3.744 23 C -0.254 4.254 24 C 0.097 3.903 25 N -0.319 5.319 26 N -0.303 5.303 27 C -0.130 4.130 28 C -0.118 4.118 29 C -0.139 4.139 30 C -0.109 4.109 31 H 0.260 0.740 32 H 0.363 0.637 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.416 0.584 36 H 0.182 0.818 37 H 0.190 0.810 38 H 0.166 0.834 39 H 0.203 0.797 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.867 -10.654 -2.418 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.187 4.187 3 Si 0.710 3.290 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.364 5.364 10 C 0.081 3.919 11 H 0.097 0.903 12 C -0.222 4.222 13 C 0.039 3.961 14 H 0.133 0.867 15 N -0.345 5.345 16 C 0.334 3.666 17 O -0.391 6.391 18 C 0.028 3.972 19 C -0.181 4.181 20 C -0.006 4.006 21 N -0.160 5.160 22 C 0.028 3.972 23 C -0.285 4.285 24 C -0.079 4.079 25 N -0.145 5.145 26 N -0.077 5.077 27 C -0.132 4.132 28 C -0.155 4.155 29 C -0.177 4.177 30 C -0.147 4.147 31 H 0.070 0.930 32 H 0.196 0.804 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.260 0.740 36 H 0.199 0.801 37 H 0.207 0.793 38 H 0.184 0.816 39 H 0.220 0.780 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.892 -10.052 -2.435 26.955 hybrid contribution 0.831 0.897 0.009 1.223 sum 25.723 -9.155 -2.426 27.412 Atomic orbital electron populations 1.69693 1.05095 1.25935 1.57063 1.24651 0.95207 0.97168 1.01706 0.86618 0.79306 0.85073 0.78012 1.20902 1.21627 1.20176 1.19083 0.80223 0.94847 1.43533 0.88956 1.42442 1.03921 1.01446 1.88559 1.20714 0.88929 0.90286 0.91997 0.90285 1.24295 0.96105 0.99458 1.02312 1.22507 0.80433 0.98486 0.94669 0.86708 1.46472 1.20171 1.28888 1.38973 1.17603 0.82545 0.84810 0.81641 1.90887 1.73579 1.22740 1.51926 1.20980 0.97018 0.85028 0.94164 1.22228 0.94520 1.03467 0.97845 1.23493 0.93543 0.88721 0.94842 1.67986 1.29943 1.11652 1.06455 1.20799 0.84010 0.95859 0.96576 1.21052 1.03789 1.00190 1.03478 1.23852 0.91186 0.95389 0.97460 1.77344 1.21499 1.07685 1.07994 1.47408 1.16191 1.17016 1.27135 1.23530 0.98792 0.98234 0.92685 1.22616 0.98242 0.96998 0.97679 1.22832 0.97643 0.97396 0.99781 1.22529 0.98912 0.95458 0.97839 0.92957 0.80358 0.90690 0.90422 0.74049 0.80097 0.79302 0.81644 0.78024 0.92041 0.89040 0.91170 0.91689 0.89224 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.99 13.97 55.49 0.78 -28.22 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 22.13 27.74 -169.99 -4.71 17.41 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.25 -6.84 10.45 -15.06 -0.16 -6.99 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.72 -16.76 4.90 -52.99 -0.26 -17.02 16 10 C 0.19 3.64 4.36 -67.48 -0.29 3.34 16 11 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 12 C -0.18 -3.10 7.69 -25.75 -0.20 -3.29 16 13 C 0.14 2.32 4.04 -67.48 -0.27 2.05 16 14 H 0.12 2.11 7.46 -51.93 -0.39 1.73 16 15 N -0.69 -9.94 5.27 -54.42 -0.29 -10.23 16 16 C 0.55 8.05 7.79 -12.49 -0.10 7.95 16 17 O -0.52 -8.77 15.96 5.28 0.08 -8.69 16 18 C 0.15 1.74 6.82 -81.98 -0.56 1.18 16 19 C -0.16 -1.33 9.61 -39.36 -0.38 -1.71 16 20 C 0.18 1.23 11.26 -17.14 -0.19 1.04 16 21 N -0.45 -4.33 10.44 -12.24 -0.13 -4.46 16 22 C 0.26 2.76 7.93 -155.56 -1.23 1.53 16 23 C -0.25 -2.22 10.91 -39.18 -0.43 -2.65 16 24 C 0.10 0.80 11.94 -17.58 -0.21 0.59 16 25 N -0.32 -3.55 9.92 30.46 0.30 -3.25 16 26 N -0.30 -3.56 3.94 -8.87 -0.03 -3.59 16 27 C -0.13 -2.02 0.92 -154.71 -0.14 -2.16 16 28 C -0.12 -1.80 7.49 -26.28 -0.20 -2.00 16 29 C -0.14 -1.75 8.08 -25.75 -0.21 -1.96 16 30 C -0.11 -1.40 7.47 -26.28 -0.20 -1.59 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.36 8.42 5.67 -40.82 -0.23 8.19 16 33 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.42 5.53 3.75 -40.82 -0.15 5.38 16 36 H 0.18 1.24 7.65 -52.49 -0.40 0.84 16 37 H 0.19 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.20 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.78 6.42 -51.93 -0.33 0.45 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -34.30 371.71 -9.27 -43.57 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.75 Total: 13.40 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.86 Total: -4.52 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: 0.37 Total: -66.77 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.30 -9.27 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078644296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.044 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds