Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99784 * 2 1 4 4 H 1.48491 * 109.47378 * 270.00380 * 3 2 1 5 5 H 1.48500 * 109.47180 * 30.00693 * 3 2 1 6 6 H 1.48510 * 109.46886 * 150.00249 * 3 2 1 7 7 C 1.38809 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00014 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00008 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.94750 * 336.39769 * 10 9 7 12 12 C 1.53946 * 113.66729 * 107.81191 * 10 9 7 13 13 C 1.53945 * 87.29916 * 139.20481 * 12 10 9 14 14 H 1.09000 * 113.74807 * 220.79057 * 13 12 10 15 15 N 1.46494 * 113.66295 * 89.73560 * 13 12 10 16 16 C 1.34784 * 119.99635 * 107.81584 * 15 13 12 17 17 O 1.21682 * 120.00099 * 0.02562 * 16 15 13 18 18 C 1.46813 * 119.99944 * 180.02562 * 16 15 13 19 19 C 1.40415 * 126.53797 * 359.68798 * 18 16 15 20 20 N 1.30975 * 108.76319 * 179.81857 * 19 18 16 21 21 N 1.39719 * 109.48692 * 0.45083 * 20 19 18 22 22 C 1.36358 * 133.19029 * 179.74604 * 21 20 19 23 23 C 1.35291 * 119.80392 * 179.97438 * 22 21 20 24 24 N 1.33242 * 121.27487 * 0.02562 * 23 22 21 25 25 C 1.31411 * 121.08110 * 359.96548 * 24 23 22 26 26 C 1.36814 * 107.96649 * 359.71576 * 21 20 19 27 27 C 1.52912 * 113.66203 * 205.00076 * 10 9 7 28 28 C 1.52915 * 121.13524 * 346.34479 * 27 10 9 29 29 C 1.53942 * 86.78307 * 100.82034 * 28 27 10 30 30 C 1.52906 * 121.13683 * 94.90283 * 27 10 9 31 31 H 0.97000 * 120.00001 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00656 * 359.97438 * 9 7 2 33 33 H 1.09000 * 113.57638 * 24.59966 * 12 10 9 34 34 H 1.09000 * 113.57785 * 253.80713 * 12 10 9 35 35 H 0.96995 * 120.00292 * 288.09017 * 15 13 12 36 36 H 1.07998 * 125.62090 * 359.97438 * 19 18 16 37 37 H 1.07994 * 120.09411 * 359.94375 * 22 21 20 38 38 H 1.08006 * 119.36249 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.18670 * 180.02562 * 25 24 23 40 40 H 1.09001 * 113.65859 * 215.29768 * 28 27 10 41 41 H 1.09004 * 113.65884 * 346.34797 * 28 27 10 42 42 H 1.09000 * 113.58324 * 270.12584 * 29 28 27 43 43 H 1.09000 * 113.64848 * 139.34812 * 29 28 27 44 44 H 1.08994 * 113.66446 * 13.65479 * 30 27 10 45 45 H 1.09007 * 113.65868 * 144.62119 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0672 -3.5649 -0.4024 12 6 1.9937 -4.4076 1.3419 13 6 1.8252 -5.7024 0.5264 14 1 1.0945 -6.3936 0.9462 15 7 3.0934 -6.3516 0.1853 16 6 3.4513 -7.4961 0.8006 17 8 2.7209 -7.9904 1.6389 18 6 4.7225 -8.1465 0.4593 19 6 5.6615 -7.7024 -0.4855 20 7 6.6670 -8.5415 -0.5067 21 7 6.4333 -9.5722 0.4071 22 6 7.1436 -10.6791 0.7672 23 6 6.6507 -11.5179 1.7073 24 7 5.4772 -11.2862 2.2943 25 6 4.7576 -10.2325 1.9798 26 6 5.2288 -9.3355 1.0113 27 6 1.2658 -4.8229 -0.5925 28 6 -0.2402 -4.7136 -0.8342 29 6 0.1033 -4.4614 -2.3135 30 6 1.4198 -5.2187 -2.0614 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0002 33 1 1.1199 -4.1535 1.9420 34 1 2.9236 -4.3674 1.9090 35 1 3.6773 -5.9557 -0.4803 36 1 5.5709 -6.8139 -1.0928 37 1 8.0965 -10.8857 0.3030 38 1 7.2190 -12.3928 1.9868 39 1 3.8086 -10.0585 2.4650 40 1 -0.7794 -5.6453 -0.6629 41 1 -0.7016 -3.8584 -0.3403 42 1 0.2455 -3.4080 -2.5547 43 1 -0.5647 -4.9682 -3.0100 44 1 2.2843 -4.7671 -2.5478 45 1 1.3485 -6.2925 -2.2348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078647331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 146.525170 kcal Electronic energy + Delta-G solvation = -29084.235060 eV Core-core repulsion = 25105.969275 eV Total energy + Delta-G solvation = -3978.265785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.89175 -40.56849 -39.06918 -38.35773 -35.00673 -34.10762 -33.98894 -32.30001 -31.73715 -30.16934 -29.32595 -25.48113 -25.25379 -25.09304 -24.11680 -23.99241 -22.96609 -22.01906 -20.76407 -20.00607 -18.88590 -18.04622 -17.72234 -17.29073 -16.68824 -16.51374 -16.10822 -15.65649 -15.45236 -15.12595 -14.81505 -14.57389 -14.37558 -13.93130 -13.72567 -13.52687 -13.37122 -13.32717 -12.60155 -12.46390 -11.99555 -11.78907 -11.70382 -11.62043 -11.33189 -11.28480 -10.88867 -10.82586 -10.58465 -10.43412 -10.27621 -10.17747 -10.14075 -9.93317 -9.83247 -9.61922 -9.38123 -8.85548 -8.72947 -8.27561 -6.97733 -5.80794 -3.09144 -0.04568 0.38125 1.46639 1.73979 2.82988 3.14360 3.37856 3.40890 3.46682 3.48076 3.66766 3.74788 3.82031 4.33189 4.49774 4.55974 4.60430 4.80983 4.89168 4.97689 5.02502 5.08000 5.16267 5.26846 5.30099 5.45357 5.69269 5.69644 5.76360 5.87498 5.97123 5.99738 6.02608 6.07343 6.12787 6.20196 6.31827 6.43587 6.51475 6.58723 6.67153 6.81822 6.90061 6.94761 7.07154 7.14279 7.63546 7.66932 8.30450 8.38014 9.49662 10.07172 10.41831 11.41390 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.002474 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.500312 B =11313.744735 C =11891.546916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.708 5.708 10 C 0.191 3.809 11 H 0.075 0.925 12 C -0.175 4.175 13 C 0.132 3.868 14 H 0.098 0.902 15 N -0.696 5.696 16 C 0.597 3.403 17 O -0.549 6.549 18 C -0.268 4.268 19 C 0.116 3.884 20 N -0.302 5.302 21 N -0.249 5.249 22 C 0.063 3.937 23 C 0.027 3.973 24 N -0.445 5.445 25 C 0.170 3.830 26 C 0.093 3.907 27 C -0.121 4.121 28 C -0.109 4.109 29 C -0.131 4.131 30 C -0.126 4.126 31 H 0.256 0.744 32 H 0.387 0.613 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.398 0.602 36 H 0.206 0.794 37 H 0.182 0.818 38 H 0.187 0.813 39 H 0.198 0.802 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.362 -22.229 -1.530 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.079 3.921 11 H 0.093 0.907 12 C -0.217 4.217 13 C 0.027 3.973 14 H 0.116 0.884 15 N -0.345 5.345 16 C 0.384 3.616 17 O -0.427 6.427 18 C -0.287 4.287 19 C -0.063 4.063 20 N -0.125 5.125 21 N -0.016 5.016 22 C -0.066 4.066 23 C -0.114 4.114 24 N -0.157 5.157 25 C -0.009 4.009 26 C -0.030 4.030 27 C -0.124 4.124 28 C -0.147 4.147 29 C -0.169 4.169 30 C -0.163 4.163 31 H 0.065 0.935 32 H 0.223 0.777 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.232 0.768 36 H 0.222 0.778 37 H 0.199 0.801 38 H 0.204 0.796 39 H 0.215 0.785 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.986 -23.251 -0.965 26.176 hybrid contribution 0.204 1.946 -0.645 2.060 sum 12.190 -21.305 -1.610 24.599 Atomic orbital electron populations 1.69652 1.05075 1.25739 1.57390 1.24738 0.95495 0.97686 1.02819 0.86219 0.78706 0.83948 0.77468 1.21757 1.21801 1.20788 1.19268 0.91008 0.84200 1.42962 0.91206 1.42397 1.05917 0.99561 1.86745 1.21289 0.94279 0.84569 0.91993 0.90676 1.24281 1.01996 0.95422 1.00010 1.21719 0.84841 0.93488 0.97266 0.88417 1.45311 1.22277 1.24280 1.42610 1.16805 0.83721 0.80174 0.80862 1.90766 1.53488 1.64966 1.33526 1.19866 1.01157 0.99696 1.07945 1.24288 0.89367 0.97633 0.95052 1.77718 1.24025 0.98817 1.11960 1.46234 1.13505 1.16641 1.25263 1.22666 0.99402 0.85311 0.99210 1.22473 0.94048 1.00364 0.94565 1.68294 1.05393 1.18084 1.23891 1.23402 0.99877 0.86555 0.91069 1.20399 0.88033 0.97413 0.97181 1.23598 0.97713 0.98036 0.93064 1.22447 0.93843 1.01640 0.96806 1.22737 0.96607 1.01425 0.96106 1.22641 0.98542 0.99241 0.95917 0.93454 0.77682 0.89551 0.92243 0.76785 0.77766 0.80074 0.79646 0.78544 0.90753 0.90291 0.89209 0.92545 0.91784 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.44 9.97 -15.06 -0.15 -6.59 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.71 -16.58 5.32 -52.99 -0.28 -16.86 16 10 C 0.19 3.49 4.27 -67.48 -0.29 3.21 16 11 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 12 C -0.17 -2.99 7.68 -25.75 -0.20 -3.19 16 13 C 0.13 1.93 4.12 -67.49 -0.28 1.66 16 14 H 0.10 1.53 7.46 -51.93 -0.39 1.14 16 15 N -0.70 -8.61 5.04 -54.64 -0.28 -8.89 16 16 C 0.60 8.00 7.79 -12.79 -0.10 7.90 16 17 O -0.55 -8.90 15.41 5.21 0.08 -8.82 16 18 C -0.27 -3.09 6.16 -104.75 -0.65 -3.74 16 19 C 0.12 1.12 11.44 -17.10 -0.20 0.92 16 20 N -0.30 -3.24 12.60 30.76 0.39 -2.86 16 21 N -0.25 -2.52 3.91 -10.51 -0.04 -2.56 16 22 C 0.06 0.42 11.24 -16.59 -0.19 0.24 16 23 C 0.03 0.17 11.07 -17.99 -0.20 -0.03 16 24 N -0.45 -4.16 10.44 -13.26 -0.14 -4.29 16 25 C 0.17 1.77 10.98 -17.01 -0.19 1.58 16 26 C 0.09 1.04 6.77 -84.06 -0.57 0.47 16 27 C -0.12 -1.84 0.92 -154.71 -0.14 -1.98 16 28 C -0.11 -1.69 7.47 -26.28 -0.20 -1.89 16 29 C -0.13 -1.96 8.08 -25.75 -0.21 -2.17 16 30 C -0.13 -1.69 7.49 -26.28 -0.20 -1.89 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.39 9.66 5.92 -40.82 -0.24 9.42 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.40 4.04 7.54 -40.82 -0.31 3.73 16 36 H 0.21 1.26 7.46 -52.49 -0.39 0.86 16 37 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 38 H 0.19 0.46 8.06 -52.48 -0.42 0.04 16 39 H 0.20 2.00 7.20 -52.49 -0.38 1.62 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.41 6.42 -51.93 -0.33 1.08 16 42 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -33.17 376.97 -8.53 -41.71 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.81 Total: 12.44 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.84 Total: -5.91 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.38 Total: -61.94 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.17 -8.53 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.232 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds