Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48507 * 109.47119 * 269.99521 * 3 2 1 5 5 H 1.48504 * 109.47478 * 29.99420 * 3 2 1 6 6 H 1.48499 * 109.47251 * 149.99944 * 3 2 1 7 7 C 1.38805 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99854 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00134 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.88663 * 336.35147 * 10 9 7 12 12 C 1.53958 * 113.74352 * 107.77542 * 10 9 7 13 13 C 1.53951 * 87.29281 * 139.21786 * 12 10 9 14 14 H 1.08997 * 113.74255 * 220.78024 * 13 12 10 15 15 N 1.46497 * 113.66184 * 89.73976 * 13 12 10 16 16 C 1.34779 * 120.00191 * 107.80978 * 15 13 12 17 17 O 1.21556 * 119.99803 * 0.02562 * 16 15 13 18 18 C 1.47878 * 120.00275 * 179.97438 * 16 15 13 19 19 C 1.39897 * 125.69253 * 179.97438 * 18 16 15 20 20 C 1.38583 * 107.59252 * 179.97438 * 19 18 16 21 21 N 1.34109 * 132.34357 * 180.02562 * 20 19 18 22 22 C 1.31134 * 120.84312 * 179.97438 * 21 20 19 23 23 C 1.40343 * 120.29505 * 0.02562 * 22 21 20 24 24 C 1.35450 * 119.46679 * 0.02562 * 23 22 21 25 25 N 1.36674 * 119.14161 * 359.97054 * 24 23 22 26 26 N 1.32377 * 125.69271 * 0.02562 * 18 16 15 27 27 C 1.52903 * 86.78458 * 335.26655 * 13 12 10 28 28 C 1.52911 * 121.13531 * 259.18244 * 27 13 12 29 29 C 1.53951 * 86.78270 * 209.37692 * 28 27 13 30 30 C 1.52905 * 121.14085 * 150.62028 * 27 13 12 31 31 H 0.97005 * 120.00037 * 0.02562 * 1 2 3 32 32 H 0.96996 * 119.99707 * 0.02562 * 9 7 2 33 33 H 1.08998 * 113.57890 * 24.61209 * 12 10 9 34 34 H 1.09007 * 113.57897 * 253.82165 * 12 10 9 35 35 H 0.96995 * 120.00069 * 287.81049 * 15 13 12 36 36 H 1.07998 * 126.20826 * 0.02562 * 19 18 16 37 37 H 1.08001 * 119.85264 * 179.72731 * 22 21 20 38 38 H 1.08002 * 120.26657 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.42592 * 180.02562 * 24 23 22 40 40 H 1.08993 * 113.66505 * 323.84815 * 28 27 13 41 41 H 1.09000 * 113.66453 * 94.91293 * 28 27 13 42 42 H 1.09000 * 113.58720 * 270.13170 * 29 28 27 43 43 H 1.09005 * 113.65099 * 139.34053 * 29 28 27 44 44 H 1.09001 * 113.66422 * 265.09545 * 30 27 13 45 45 H 1.09003 * 113.65796 * 36.14269 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0016 11 1 3.0663 -3.5641 -0.4020 12 6 1.9965 -4.4081 1.3440 13 6 1.8274 -5.7027 0.5282 14 1 1.0979 -6.3946 0.9492 15 7 3.0953 -6.3511 0.1846 16 6 3.4552 -7.4956 0.7988 17 8 2.7273 -7.9900 1.6374 18 6 4.7348 -8.1503 0.4516 19 6 5.2239 -9.3351 1.0122 20 6 6.4458 -9.6067 0.4175 21 7 7.3285 -10.6030 0.5811 22 6 8.4386 -10.6390 -0.1162 23 6 8.7217 -9.6295 -1.0491 24 6 7.8391 -8.6168 -1.2235 25 7 6.6892 -8.6016 -0.4850 26 7 5.6091 -7.7127 -0.4408 27 6 1.2653 -4.8232 -0.5892 28 6 -0.2411 -4.7148 -0.8280 29 6 0.0994 -4.4618 -2.3079 30 6 1.4168 -5.2184 -2.0585 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0016 33 1 1.1238 -4.1547 1.9458 34 1 2.9275 -4.3675 1.9095 35 1 3.6759 -5.9567 -0.4848 36 1 4.7371 -9.9306 1.7703 37 1 9.1403 -11.4465 0.0317 38 1 9.6362 -9.6593 -1.6228 39 1 8.0412 -7.8321 -1.9375 40 1 -0.7795 -5.6467 -0.6562 41 1 -0.7022 -3.8601 -0.3330 42 1 0.2406 -3.4082 -2.5490 43 1 -0.5695 -4.9687 -3.0034 44 1 2.2802 -4.7661 -2.5464 45 1 1.3444 -6.2920 -2.2324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078756549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = 149.705612 kcal Electronic energy + Delta-G solvation = -28846.111496 eV Core-core repulsion = 24867.983625 eV Total energy + Delta-G solvation = -3978.127871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.69228 -40.63338 -39.21400 -37.98276 -35.05258 -34.45627 -34.07937 -32.45994 -31.40838 -29.81844 -29.51179 -26.00955 -25.41322 -24.70339 -24.17808 -24.09688 -22.92907 -21.89257 -20.63127 -20.01108 -18.76374 -18.17098 -17.91358 -17.19183 -16.78350 -16.51681 -15.94171 -15.90239 -15.14866 -14.89467 -14.81606 -14.73719 -14.41877 -13.88675 -13.79052 -13.49547 -13.35388 -12.99520 -12.60622 -12.47193 -11.99496 -11.81520 -11.74223 -11.68555 -11.62572 -11.34225 -10.88712 -10.83303 -10.60681 -10.37969 -10.28834 -10.17372 -10.06251 -9.95652 -9.85982 -9.63306 -9.39043 -8.85407 -8.73866 -8.36787 -6.97586 -5.80291 -3.08685 0.03853 0.31805 1.52279 1.56125 2.91897 2.92412 3.22523 3.41153 3.44629 3.46955 3.48372 3.68600 3.91714 4.37986 4.49204 4.56423 4.79181 4.82715 4.91601 5.03724 5.05196 5.10676 5.24328 5.29775 5.33562 5.44065 5.53738 5.69871 5.82182 5.87707 5.95993 6.00655 6.03558 6.07367 6.12976 6.15535 6.33106 6.42736 6.46840 6.58423 6.64016 6.80179 6.89881 6.94475 7.05150 7.14261 7.54408 7.67768 8.11385 8.38501 9.50154 10.07312 10.42397 11.41894 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.002489 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.172956 B =11248.735857 C =12131.828321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.707 5.707 10 C 0.191 3.809 11 H 0.076 0.924 12 C -0.174 4.174 13 C 0.127 3.873 14 H 0.100 0.900 15 N -0.683 5.683 16 C 0.598 3.402 17 O -0.520 6.520 18 C 0.079 3.921 19 C -0.200 4.200 20 C 0.247 3.753 21 N -0.456 5.456 22 C 0.178 3.822 23 C -0.223 4.223 24 C 0.163 3.837 25 N -0.306 5.306 26 N -0.275 5.275 27 C -0.121 4.121 28 C -0.109 4.109 29 C -0.131 4.131 30 C -0.126 4.126 31 H 0.256 0.744 32 H 0.388 0.612 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.408 0.592 36 H 0.173 0.827 37 H 0.182 0.818 38 H 0.170 0.830 39 H 0.182 0.818 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.776 -21.473 -4.945 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.079 3.921 11 H 0.094 0.906 12 C -0.216 4.216 13 C 0.021 3.979 14 H 0.118 0.882 15 N -0.332 5.332 16 C 0.380 3.620 17 O -0.394 6.394 18 C -0.081 4.081 19 C -0.231 4.231 20 C 0.021 3.979 21 N -0.167 5.167 22 C -0.008 4.008 23 C -0.247 4.247 24 C 0.030 3.970 25 N -0.079 5.079 26 N -0.104 5.104 27 C -0.123 4.123 28 C -0.147 4.147 29 C -0.168 4.168 30 C -0.164 4.164 31 H 0.065 0.935 32 H 0.223 0.777 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.243 0.757 36 H 0.191 0.809 37 H 0.199 0.801 38 H 0.187 0.813 39 H 0.199 0.801 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.040 -21.183 -4.464 26.360 hybrid contribution 0.742 1.099 -0.384 1.381 sum 15.782 -20.084 -4.848 25.999 Atomic orbital electron populations 1.69654 1.05071 1.25737 1.57403 1.24738 0.95504 0.97687 1.02809 0.86211 0.78705 0.83914 0.77465 1.21755 1.21781 1.20788 1.19277 0.91027 0.84187 1.42948 0.91206 1.42390 1.05910 0.99532 1.86721 1.21290 0.94351 0.84586 0.91901 0.90615 1.24290 1.02135 0.95088 1.00091 1.21837 0.84561 0.93729 0.97724 0.88204 1.45488 1.22436 1.23625 1.41654 1.16810 0.82856 0.80691 0.81611 1.90824 1.51668 1.64436 1.32440 1.22197 0.95319 0.95417 0.95170 1.20994 0.94254 0.99953 1.07856 1.20554 0.96738 0.87439 0.93147 1.68260 1.02944 1.20774 1.24721 1.23462 0.92262 0.96544 0.88485 1.21882 1.02380 0.96106 1.04309 1.22139 0.82132 0.99412 0.93365 1.47175 1.14844 1.18612 1.27308 1.78165 0.95407 1.12955 1.23918 1.23595 0.97789 0.97901 0.93047 1.22451 0.93673 1.01700 0.96842 1.22740 0.96551 1.01448 0.96081 1.22646 0.98606 0.99273 0.95853 0.93453 0.77665 0.89303 0.92150 0.75681 0.80915 0.80124 0.81290 0.80054 0.90687 0.90202 0.89167 0.92479 0.91714 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -16.97 5.33 -52.99 -0.28 -17.26 16 10 C 0.19 3.68 4.27 -67.48 -0.29 3.39 16 11 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 12 C -0.17 -3.11 7.69 -25.74 -0.20 -3.31 16 13 C 0.13 1.99 4.12 -67.49 -0.28 1.71 16 14 H 0.10 1.63 7.46 -51.93 -0.39 1.24 16 15 N -0.68 -9.84 5.04 -54.31 -0.27 -10.11 16 16 C 0.60 9.17 7.83 -12.31 -0.10 9.07 16 17 O -0.52 -9.30 16.48 5.32 0.09 -9.21 16 18 C 0.08 1.09 7.05 -83.07 -0.59 0.51 16 19 C -0.20 -2.61 10.65 -38.83 -0.41 -3.03 16 20 C 0.25 2.91 7.90 -155.42 -1.23 1.68 16 21 N -0.46 -4.45 10.48 -12.22 -0.13 -4.58 16 22 C 0.18 0.93 11.27 -17.06 -0.19 0.73 16 23 C -0.22 -0.80 10.05 -39.79 -0.40 -1.20 16 24 C 0.16 1.01 11.30 -16.39 -0.19 0.82 16 25 N -0.31 -3.29 3.90 -12.20 -0.05 -3.33 16 26 N -0.27 -3.52 12.34 33.23 0.41 -3.11 16 27 C -0.12 -1.94 0.92 -154.72 -0.14 -2.08 16 28 C -0.11 -1.74 7.47 -26.28 -0.20 -1.94 16 29 C -0.13 -2.03 8.08 -25.75 -0.21 -2.24 16 30 C -0.13 -1.84 7.49 -26.28 -0.20 -2.03 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.39 9.83 5.92 -40.82 -0.24 9.59 16 33 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.41 5.45 8.30 -40.82 -0.34 5.11 16 36 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.18 0.21 8.06 -52.49 -0.42 -0.22 16 38 H 0.17 -0.07 8.06 -52.49 -0.42 -0.50 16 39 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.46 6.42 -51.93 -0.33 1.12 16 42 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -33.94 380.64 -9.57 -43.51 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -5.92 Total: 13.07 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -4.85 Total: -5.05 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: 0.40 Total: -65.14 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.94 -9.57 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078756549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.212 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds