Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99957 * 2 1 4 4 H 1.48496 * 109.46946 * 269.99523 * 3 2 1 5 5 H 1.48504 * 109.46947 * 29.99727 * 3 2 1 6 6 H 1.48498 * 109.46851 * 149.99743 * 3 2 1 7 7 C 1.38811 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00333 * 0.02562 * 7 2 1 9 9 N 1.36944 * 119.99433 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99373 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.32597 * 35.36138 * 10 9 7 12 12 C 1.53034 * 109.32359 * 155.00172 * 10 9 7 13 13 C 1.53964 * 108.83243 * 175.68042 * 12 10 9 14 14 H 1.09003 * 112.99622 * 169.01308 * 13 12 10 15 15 C 1.55427 * 106.40978 * 293.82144 * 13 12 10 16 16 C 1.55177 * 100.35505 * 73.37879 * 15 13 12 17 17 H 1.08989 * 112.48488 * 163.35069 * 16 15 13 18 18 C 1.52982 * 109.32794 * 275.88845 * 10 9 7 19 19 N 1.47791 * 104.25179 * 40.54391 * 16 15 13 20 20 C 1.34777 * 125.85094 * 153.56195 * 19 16 15 21 21 O 1.21564 * 120.00216 * 0.02562 * 20 19 16 22 22 C 1.47803 * 119.99596 * 180.02562 * 20 19 16 23 23 N 1.32290 * 120.59380 * 359.72037 * 22 20 19 24 24 C 1.32695 * 121.18496 * 179.75422 * 23 22 20 25 25 C 1.35471 * 122.11394 * 0.51890 * 24 23 22 26 26 N 1.36222 * 120.53027 * 359.75453 * 25 24 23 27 27 C 1.36156 * 133.93615 * 179.97438 * 26 25 24 28 28 C 1.35337 * 107.14594 * 180.02562 * 27 26 25 29 29 N 1.33563 * 108.61237 * 0.02562 * 28 27 26 30 30 C 1.31855 * 109.14186 * 359.97438 * 29 28 27 31 31 C 1.47077 * 108.28991 * 333.54420 * 19 16 15 32 32 H 0.97007 * 119.99657 * 0.02562 * 1 2 3 33 33 H 0.96996 * 120.00174 * 0.02562 * 9 7 2 34 34 H 1.09001 * 109.57921 * 55.87148 * 12 10 9 35 35 H 1.09000 * 109.68310 * 295.54818 * 12 10 9 36 36 H 1.09000 * 111.23764 * 191.14944 * 15 13 12 37 37 H 1.09000 * 111.23852 * 315.59767 * 15 13 12 38 38 H 1.08998 * 109.53291 * 304.53031 * 18 10 9 39 39 H 1.09000 * 109.53009 * 64.68654 * 18 10 9 40 40 H 1.08004 * 118.93796 * 180.27334 * 24 23 22 41 41 H 1.08001 * 119.73628 * 179.77922 * 25 24 23 42 42 H 1.08001 * 126.43065 * 0.06479 * 27 26 25 43 43 H 1.08006 * 125.69748 * 179.97438 * 28 27 26 44 44 H 1.08999 * 109.97338 * 241.73884 * 31 19 16 45 45 H 1.08994 * 109.97912 * 120.45995 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5662 -3.2026 -0.5946 12 6 5.4990 -2.2550 -0.6086 13 6 6.2976 -3.5671 -0.5041 14 1 7.2208 -3.5511 -1.0835 15 6 6.5308 -3.8197 1.0116 16 6 5.1053 -4.2538 1.4446 17 1 5.0982 -4.7556 2.4121 18 6 4.2364 -2.9838 1.4370 19 7 4.6376 -5.1190 0.3414 20 6 3.7261 -6.1064 0.4447 21 8 3.2112 -6.3484 1.5190 22 6 3.3526 -6.8951 -0.7482 23 7 3.9016 -6.6382 -1.9241 24 6 3.5785 -7.3419 -3.0017 25 6 2.6699 -8.3459 -2.9604 26 7 2.0528 -8.6731 -1.7909 27 6 1.1230 -9.6044 -1.4417 28 6 0.8875 -9.4560 -0.1173 29 7 1.6495 -8.4599 0.3422 30 6 2.3647 -7.9692 -0.6509 31 6 5.3372 -4.7175 -0.8884 32 1 -0.4850 0.8401 -0.0004 33 1 3.8646 -0.3621 0.0014 34 1 6.0187 -1.4667 -0.0640 35 1 5.3993 -1.9705 -1.6561 36 1 7.2529 -4.6203 1.1720 37 1 6.8374 -2.9064 1.5216 38 1 4.7031 -2.2191 2.0579 39 1 3.2458 -3.2163 1.8279 40 1 4.0523 -7.1040 -3.9426 41 1 2.4332 -8.8915 -3.8619 42 1 0.6606 -10.3266 -2.0982 43 1 0.1978 -10.0441 0.4700 44 1 4.6175 -4.3698 -1.6295 45 1 5.9044 -5.5591 -1.2859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095004875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = 116.746009 kcal Electronic energy + Delta-G solvation = -30399.035668 eV Core-core repulsion = 26419.478562 eV Total energy + Delta-G solvation = -3979.557106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.19413 -40.83613 -38.81421 -37.97218 -34.90482 -34.48980 -32.58509 -31.29461 -31.03372 -30.43114 -29.61609 -28.31969 -26.12235 -25.15063 -23.49401 -23.35469 -22.66847 -21.68278 -20.90195 -19.84259 -19.10226 -18.70687 -17.94107 -17.39994 -16.51133 -16.25841 -15.91753 -15.72768 -15.44720 -14.78382 -14.59991 -14.40725 -14.01372 -13.77624 -13.67541 -13.45973 -13.24962 -12.95368 -12.64602 -12.60648 -12.37163 -12.20710 -11.83252 -11.73359 -11.61470 -11.20019 -11.07424 -10.87971 -10.56130 -10.31739 -10.30532 -10.13807 -9.99963 -9.72294 -9.59348 -9.51198 -9.21576 -8.85785 -8.47647 -8.33088 -7.20430 -5.70649 -3.06179 -0.14020 0.96641 2.04667 2.54521 2.74945 2.87900 3.40382 3.42658 3.48205 3.58486 3.73134 3.76318 4.00164 4.30498 4.56670 4.63463 4.65502 4.82223 4.89331 4.94065 5.03902 5.09781 5.29401 5.41456 5.44013 5.47239 5.54523 5.71265 5.76644 5.80944 5.84692 5.90346 5.96919 6.10745 6.13348 6.18629 6.27075 6.34138 6.39477 6.45779 6.53685 6.65916 6.97986 7.07239 7.20065 7.60553 7.67062 8.07076 8.27591 8.48371 9.27306 9.99389 10.19266 11.47963 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.003732 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.174602 B = 7500.092239 C = 8492.323184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.239 4.239 8 H 0.087 0.913 9 N -0.748 5.748 10 C 0.182 3.818 11 H 0.057 0.943 12 C -0.125 4.125 13 C -0.102 4.102 14 H 0.099 0.901 15 C -0.127 4.127 16 C 0.136 3.864 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.586 5.586 20 C 0.584 3.416 21 O -0.498 6.498 22 C 0.191 3.809 23 N -0.421 5.421 24 C 0.029 3.971 25 C 0.031 3.969 26 N -0.357 5.357 27 C -0.083 4.083 28 C 0.032 3.968 29 N -0.433 5.433 30 C 0.193 3.807 31 C 0.119 3.881 32 H 0.258 0.742 33 H 0.360 0.640 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.185 0.815 41 H 0.175 0.825 42 H 0.190 0.810 43 H 0.189 0.811 44 H 0.083 0.917 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.020 -19.382 -7.852 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.105 0.895 9 N -0.390 5.390 10 C 0.073 3.927 11 H 0.075 0.925 12 C -0.163 4.163 13 C -0.122 4.122 14 H 0.117 0.883 15 C -0.165 4.165 16 C 0.033 3.967 17 H 0.115 0.885 18 C -0.186 4.186 19 N -0.320 5.320 20 C 0.369 3.631 21 O -0.370 6.370 22 C 0.025 3.975 23 N -0.137 5.137 24 C -0.111 4.111 25 C -0.095 4.095 26 N -0.031 5.031 27 C -0.216 4.216 28 C -0.120 4.120 29 N -0.152 5.152 30 C -0.055 4.055 31 C -0.004 4.004 32 H 0.068 0.932 33 H 0.192 0.808 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.202 0.798 41 H 0.192 0.808 42 H 0.207 0.793 43 H 0.206 0.794 44 H 0.101 0.899 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.009 -18.762 -6.758 23.810 hybrid contribution -0.401 0.206 -1.066 1.157 sum 12.608 -18.556 -7.824 23.759 Atomic orbital electron populations 1.69718 1.05130 1.25662 1.57800 1.24672 0.95201 0.97118 1.02223 0.86541 0.79206 0.85077 0.77641 1.21208 1.21855 1.20323 1.19070 0.80642 0.94601 1.42546 0.89485 1.42799 1.03985 1.01978 1.90263 1.20244 0.90424 0.88949 0.93070 0.92511 1.22158 0.96622 0.95993 1.01511 1.22688 0.97950 0.95193 0.96338 0.88292 1.23057 0.95717 1.01733 0.96033 1.22390 0.93333 0.90548 0.90413 0.88544 1.22801 1.00168 0.94770 1.00895 1.48313 1.39804 1.32214 1.11670 1.16762 0.80105 0.79887 0.86350 1.90909 1.51938 1.67291 1.26869 1.22165 0.90912 0.91245 0.93180 1.68376 1.23011 1.24541 0.97730 1.22161 0.97450 0.93011 0.98481 1.22741 0.96676 1.00568 0.89477 1.42893 1.27339 1.23940 1.08962 1.22779 0.99872 0.99929 0.99068 1.22928 1.00183 0.96950 0.91952 1.70696 1.07586 1.09863 1.27055 1.22493 1.02029 0.98503 0.82448 1.22251 0.94930 0.96505 0.86721 0.93166 0.80773 0.91868 0.91504 0.91215 0.89542 0.91491 0.91239 0.79819 0.80802 0.79271 0.79434 0.89935 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.23 13.97 55.49 0.78 -29.45 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.47 27.74 -169.99 -4.71 17.75 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.24 -6.94 10.40 -15.06 -0.16 -7.10 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 9 N -0.75 -17.94 4.92 -53.41 -0.26 -18.21 16 10 C 0.18 3.53 2.39 -67.92 -0.16 3.37 16 11 H 0.06 1.22 5.89 -51.93 -0.31 0.91 16 12 C -0.12 -1.82 4.95 -26.21 -0.13 -1.95 16 13 C -0.10 -1.16 4.33 -87.93 -0.38 -1.55 16 14 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 15 C -0.13 -1.45 6.18 -24.29 -0.15 -1.60 16 16 C 0.14 2.05 3.98 -65.61 -0.26 1.79 16 17 H 0.10 1.46 8.04 -51.94 -0.42 1.04 16 18 C -0.15 -2.67 5.28 -26.28 -0.14 -2.81 16 19 N -0.59 -9.18 2.36 -162.93 -0.38 -9.57 16 20 C 0.58 10.56 7.85 -12.35 -0.10 10.46 16 21 O -0.50 -10.66 16.50 5.31 0.09 -10.57 16 22 C 0.19 3.02 6.93 -80.54 -0.56 2.46 16 23 N -0.42 -5.34 7.08 -8.68 -0.06 -5.40 16 24 C 0.03 0.26 11.01 -18.17 -0.20 0.06 16 25 C 0.03 0.25 11.00 -16.59 -0.18 0.07 16 26 N -0.36 -4.13 2.95 -61.13 -0.18 -4.31 16 27 C -0.08 -0.79 11.80 -16.67 -0.20 -0.98 16 28 C 0.03 0.38 11.83 -17.83 -0.21 0.17 16 29 N -0.43 -7.29 10.74 -11.28 -0.12 -7.41 16 30 C 0.19 3.05 7.66 -153.98 -1.18 1.87 16 31 C 0.12 1.52 4.14 -2.83 -0.01 1.51 16 32 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 33 H 0.36 8.38 5.65 -40.82 -0.23 8.15 16 34 H 0.06 0.89 7.97 -51.93 -0.41 0.47 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.92 7.75 -51.93 -0.40 0.52 16 38 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 39 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.19 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.08 1.18 6.21 -51.93 -0.32 0.86 16 45 H 0.07 0.79 7.46 -51.93 -0.39 0.40 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -38.95 360.36 -9.41 -48.36 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.87 Total: 7.60 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -4.11 Total: 5.78 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -0.23 Total: -74.34 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.95 -9.41 -48.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095004875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.104 kcal (2) G-P(sol) polarization free energy of solvation -38.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds