Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47338 * 240.00456 * 3 2 1 5 5 H 1.48501 * 109.47199 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46732 * 120.00623 * 3 2 1 7 7 C 1.38817 * 119.99414 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99287 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00394 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99938 * 173.69071 * 9 7 2 11 11 C 1.53001 * 112.85432 * 294.88921 * 10 9 7 12 12 N 1.46507 * 109.46872 * 292.10967 * 11 10 9 13 13 C 1.34776 * 119.99670 * 180.84938 * 12 11 10 14 14 O 1.21608 * 120.00199 * 0.02562 * 13 12 11 15 15 C 1.47427 * 119.99803 * 180.02562 * 13 12 11 16 16 C 1.41367 * 126.40645 * 0.02562 * 15 13 12 17 17 N 1.30437 * 108.08177 * 180.02562 * 16 15 13 18 18 N 1.39941 * 108.91623 * 0.02562 * 17 16 15 19 19 C 1.39806 * 125.77934 * 180.02562 * 18 17 16 20 20 C 1.38943 * 119.68681 * 359.70501 * 19 18 17 21 21 C 1.38429 * 119.10815 * 179.79118 * 20 19 18 22 22 C 1.38790 * 118.47827 * 0.47317 * 21 20 19 23 23 C 1.38132 * 119.29592 * 359.75109 * 22 21 20 24 24 N 1.31891 * 120.84281 * 0.02562 * 23 22 21 25 25 C 1.34623 * 108.44295 * 359.73392 * 18 17 16 26 26 C 1.53782 * 113.61703 * 66.08647 * 10 9 7 27 27 C 1.53958 * 87.01977 * 89.22462 * 26 10 9 28 28 C 1.53783 * 113.61301 * 163.69389 * 10 9 7 29 29 H 0.97001 * 119.99726 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99831 * 353.69479 * 9 7 2 31 31 H 1.08998 * 109.47697 * 172.11192 * 11 10 9 32 32 H 1.09001 * 109.47192 * 52.10776 * 11 10 9 33 33 H 0.96994 * 119.99828 * 0.85462 * 12 11 10 34 34 H 1.08009 * 125.96029 * 359.97438 * 16 15 13 35 35 H 1.08000 * 120.45150 * 0.02562 * 20 19 18 36 36 H 1.07995 * 120.76406 * 180.22092 * 21 20 19 37 37 H 1.08005 * 120.35376 * 179.72336 * 22 21 20 38 38 H 1.07999 * 119.58080 * 180.02562 * 23 22 21 39 39 H 1.07996 * 126.31445 * 180.27239 * 25 18 17 40 40 H 1.08999 * 113.61761 * 203.74623 * 26 10 9 41 41 H 1.09003 * 113.61150 * 334.65155 * 26 10 9 42 42 H 1.08997 * 113.53832 * 270.81456 * 27 26 10 43 43 H 1.08997 * 113.66010 * 139.93530 * 27 26 10 44 44 H 1.08993 * 113.61371 * 25.34744 * 28 10 9 45 45 H 1.09001 * 113.61457 * 156.25503 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0512 -3.6529 -0.1405 11 6 2.7357 -3.7979 -1.5012 12 7 1.7189 -3.9302 -2.5477 13 6 2.0917 -4.0882 -3.8332 14 8 3.2719 -4.1214 -4.1244 15 6 1.0685 -4.2209 -4.8863 16 6 -0.3329 -4.2009 -4.7019 17 7 -0.8969 -4.3472 -5.8688 18 7 0.1005 -4.4669 -6.8430 19 6 -0.1124 -4.6376 -8.2142 20 6 -1.4101 -4.7067 -8.7057 21 6 -1.6071 -4.8715 -10.0660 22 6 -0.4938 -4.9717 -10.8886 23 6 0.7677 -4.8993 -10.3304 24 7 0.9238 -4.7373 -9.0308 25 6 1.2998 -4.3834 -6.2371 26 6 2.9726 -3.9695 1.0493 27 6 1.7650 -4.6745 1.6935 28 6 1.2265 -4.8848 0.2684 29 1 -0.4850 0.8401 0.0004 30 1 0.3599 -2.3906 0.0921 31 1 3.3697 -4.6845 -1.4965 32 1 3.3457 -2.9160 -1.6968 33 1 0.7776 -3.9040 -2.3153 34 1 -0.8469 -4.0855 -3.7590 35 1 -2.2539 -4.6291 -8.0361 36 1 -2.6043 -4.9251 -10.4772 37 1 -0.6124 -5.1053 -11.9537 38 1 1.6372 -4.9763 -10.9663 39 1 2.2649 -4.4361 -6.7190 40 1 3.7909 -4.6451 0.8003 41 1 3.3036 -3.0844 1.5927 42 1 1.1474 -4.0125 2.3003 43 1 2.0217 -5.6023 2.2047 44 1 0.1500 -4.7378 0.1824 45 1 1.5666 -5.8112 -0.1945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273160708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = 102.559309 kcal Electronic energy + Delta-G solvation = -28464.219329 eV Core-core repulsion = 24484.047041 eV Total energy + Delta-G solvation = -3980.172288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.89233 -41.10621 -40.61367 -39.55115 -35.37314 -35.17682 -34.76659 -33.60634 -31.93942 -31.68790 -30.84052 -28.64698 -26.68001 -25.88530 -25.22424 -24.94648 -23.60867 -22.77602 -22.12055 -21.08524 -19.96795 -19.51634 -19.06894 -17.87646 -17.52138 -17.01978 -16.91865 -16.72259 -16.64392 -16.08720 -15.98747 -15.72083 -15.52102 -15.32850 -15.04231 -14.70551 -14.64744 -14.26582 -14.14177 -13.90853 -13.61399 -13.06101 -13.04092 -12.92951 -12.87155 -12.56952 -12.39708 -12.18507 -11.90404 -11.65017 -11.56086 -11.44426 -11.07725 -11.02879 -10.86066 -10.77953 -10.70422 -10.42140 -9.92861 -9.43053 -8.94803 -7.91376 -5.17158 -0.53114 0.14560 0.69287 0.86980 1.04427 1.45939 1.47804 1.52486 2.29114 2.42966 2.56764 2.71302 3.13293 3.32034 3.41093 3.66780 3.79182 3.85866 3.88571 3.94145 3.98945 4.03420 4.05390 4.14093 4.21757 4.25934 4.36445 4.54514 4.69533 4.72910 4.88744 4.94391 4.95918 4.97184 5.05946 5.11618 5.17673 5.21271 5.35047 5.42297 5.46934 5.54967 5.67222 5.75076 5.82265 6.12197 6.33319 6.67116 6.77580 7.31016 7.39809 8.14158 8.38156 9.30811 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.002536 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.624097 B =11040.426896 C =12005.731614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.066 4.066 3 Si 0.954 3.046 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.221 4.221 8 H 0.065 0.935 9 N -0.704 5.704 10 C 0.159 3.841 11 C 0.130 3.870 12 N -0.692 5.692 13 C 0.589 3.411 14 O -0.595 6.595 15 C -0.293 4.293 16 C 0.107 3.893 17 N -0.296 5.296 18 N -0.317 5.317 19 C 0.325 3.675 20 C -0.169 4.169 21 C -0.048 4.048 22 C -0.165 4.165 23 C 0.121 3.879 24 N -0.533 5.533 25 C 0.146 3.854 26 C -0.150 4.150 27 C -0.121 4.121 28 C -0.127 4.127 29 H 0.249 0.751 30 H 0.378 0.622 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.407 0.593 34 H 0.225 0.775 35 H 0.147 0.853 36 H 0.180 0.820 37 H 0.184 0.816 38 H 0.196 0.804 39 H 0.196 0.804 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 -15.760 -18.900 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.258 4.258 3 Si 0.785 3.215 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.083 0.917 9 N -0.343 5.343 10 C 0.067 3.933 11 C 0.004 3.996 12 N -0.341 5.341 13 C 0.377 3.623 14 O -0.478 6.478 15 C -0.307 4.307 16 C -0.082 4.082 17 N -0.114 5.114 18 N -0.091 5.091 19 C 0.100 3.900 20 C -0.191 4.191 21 C -0.074 4.074 22 C -0.185 4.185 23 C -0.036 4.036 24 N -0.247 5.247 25 C -0.002 4.002 26 C -0.190 4.190 27 C -0.158 4.158 28 C -0.164 4.164 29 H 0.057 0.943 30 H 0.212 0.788 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.243 0.757 34 H 0.241 0.759 35 H 0.165 0.835 36 H 0.198 0.802 37 H 0.202 0.798 38 H 0.213 0.787 39 H 0.212 0.788 40 H 0.112 0.888 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.728 -15.686 -19.443 25.258 hybrid contribution -0.068 1.641 0.603 1.749 sum -3.796 -14.045 -18.840 23.804 Atomic orbital electron populations 1.69751 1.05938 1.25669 1.59738 1.25289 0.96181 1.00079 1.04292 0.85505 0.77444 0.80840 0.77744 1.21624 1.22269 1.20616 1.19255 0.90973 0.84979 1.40062 0.91679 1.42082 1.05808 0.99798 1.86620 1.21111 0.94308 0.87034 0.90802 1.21721 0.90512 0.99635 0.87756 1.45450 1.11064 1.72014 1.05523 1.17395 0.86956 0.75564 0.82392 1.90715 1.19598 1.54418 1.83055 1.20332 0.94354 1.22483 0.93523 1.24722 0.91751 0.94021 0.97694 1.77198 1.12034 1.25713 0.96414 1.45608 1.04666 1.53697 1.05157 1.18060 0.91630 0.99746 0.80560 1.21835 0.95362 1.03457 0.98464 1.22029 1.02191 0.92338 0.90835 1.22685 0.92182 0.99947 1.03699 1.23235 0.99807 0.92811 0.87760 1.66849 1.33967 1.16606 1.07250 1.23202 0.91808 0.93066 0.92082 1.23369 0.97564 1.00086 0.97995 1.22591 0.97013 1.00138 0.96077 1.23103 0.99758 0.96888 0.96690 0.94257 0.78827 0.90996 0.95079 0.75696 0.75855 0.83538 0.80236 0.79832 0.78705 0.78758 0.88814 0.93428 0.92003 0.89691 0.91170 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.52 13.07 21.65 0.28 -56.24 16 2 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 3 Si 0.95 46.68 29.55 68.60 2.03 48.70 16 4 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.22 -11.72 9.04 84.04 0.76 -10.96 16 8 H 0.07 3.48 7.83 -2.91 -0.02 3.45 16 9 N -0.70 -32.11 5.18 -300.96 -1.56 -33.67 16 10 C 0.16 5.65 0.80 4.13 0.00 5.65 16 11 C 0.13 4.77 5.08 86.38 0.44 5.21 16 12 N -0.69 -23.73 5.41 -466.35 -2.52 -26.26 16 13 C 0.59 21.65 7.81 86.66 0.68 22.32 16 14 O -0.60 -25.83 16.90 -4.06 -0.07 -25.90 16 15 C -0.29 -9.27 6.13 -20.14 -0.12 -9.40 16 16 C 0.11 2.93 11.50 85.67 0.99 3.91 16 17 N -0.30 -8.36 11.74 -56.22 -0.66 -9.02 16 18 N -0.32 -9.03 3.76 -191.06 -0.72 -9.75 16 19 C 0.32 7.89 7.54 132.77 1.00 8.89 16 20 C -0.17 -3.08 9.69 22.48 0.22 -2.87 16 21 C -0.05 -0.48 10.17 22.45 0.23 -0.25 16 22 C -0.17 -1.28 10.11 22.38 0.23 -1.06 16 23 C 0.12 1.56 11.18 84.66 0.95 2.51 16 24 N -0.53 -11.78 9.82 -192.81 -1.89 -13.67 16 25 C 0.15 4.46 10.86 84.21 0.91 5.37 16 26 C -0.15 -4.88 7.29 31.18 0.23 -4.66 16 27 C -0.12 -3.42 8.00 31.18 0.25 -3.17 16 28 C -0.13 -3.48 7.05 31.12 0.22 -3.26 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 30 H 0.38 18.38 7.87 -92.71 -0.73 17.65 16 31 H 0.07 2.41 8.02 -2.39 -0.02 2.39 16 32 H 0.03 1.37 7.80 -2.39 -0.02 1.36 16 33 H 0.41 12.54 7.26 -92.71 -0.67 11.87 16 34 H 0.23 4.70 7.50 -2.91 -0.02 4.68 16 35 H 0.15 2.69 7.67 -2.91 -0.02 2.66 16 36 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 37 H 0.18 -0.06 8.06 -2.91 -0.02 -0.09 16 38 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.20 5.68 8.03 -2.91 -0.02 5.66 16 40 H 0.09 2.58 8.01 -2.39 -0.02 2.56 16 41 H 0.05 1.80 7.87 -2.39 -0.02 1.78 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 45 H 0.10 2.38 8.10 -2.39 -0.02 2.36 16 Total: -1.00 -75.20 387.32 1.96 -73.25 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.37 Total: 37.52 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 7.44 Total: 15.04 kcal Atomic # 7 Polarization: -141.54 SS G_CDS: -7.07 Total: -148.61 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.07 Total: -25.90 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -75.20 1.96 -73.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273160708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.807 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds