Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40116 * 120.87111 * 340.38289 * 3 2 1 5 5 N 1.31997 * 119.00230 * 180.02562 * 4 3 2 6 6 C 1.32636 * 120.90404 * 0.02562 * 5 4 3 7 7 N 1.38051 * 119.03550 * 179.97438 * 6 5 4 8 8 C 1.48630 * 110.99873 * 297.44175 * 7 6 5 9 9 C 1.55169 * 103.36342 * 200.84714 * 8 7 6 10 10 C 1.53598 * 102.66233 * 36.56974 * 9 8 7 11 11 C 1.53618 * 110.86184 * 217.75841 * 10 9 8 12 12 C 1.54707 * 101.51361 * 215.37887 * 11 10 9 13 13 N 1.46876 * 105.51709 * 24.53300 * 12 11 10 14 14 C 1.46501 * 124.36928 * 163.15113 * 13 12 11 15 15 C 1.52999 * 109.46915 * 90.00058 * 14 13 12 16 16 C 1.50704 * 109.47241 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99618 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00061 * 180.02562 * 16 15 14 19 19 N 1.31507 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99946 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47187 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47141 * 119.99730 * 20 18 16 23 23 H 1.48499 * 109.47311 * 240.00190 * 20 18 16 24 24 C 1.34752 * 111.26091 * 343.17643 * 13 12 11 25 25 O 1.21281 * 125.13344 * 181.02387 * 24 13 12 26 26 C 1.48178 * 111.00212 * 180.02562 * 7 6 5 27 27 N 1.32628 * 121.92733 * 0.25693 * 6 5 4 28 28 C 1.31995 * 120.90602 * 359.47815 * 27 6 5 29 29 H 1.08002 * 120.50301 * 0.05120 * 4 3 2 30 30 H 1.08996 * 110.64216 * 319.31601 * 8 7 6 31 31 H 1.09002 * 110.64483 * 82.21722 * 8 7 6 32 32 H 1.08996 * 110.77478 * 278.27772 * 9 8 7 33 33 H 1.08996 * 110.77214 * 154.86417 * 9 8 7 34 34 H 1.08995 * 111.02050 * 97.31722 * 11 10 9 35 35 H 1.09005 * 111.01008 * 333.43581 * 11 10 9 36 36 H 1.08997 * 110.23408 * 143.54670 * 12 11 10 37 37 H 1.08995 * 110.23730 * 265.52199 * 12 11 10 38 38 H 1.08995 * 109.47248 * 209.99900 * 14 13 12 39 39 H 1.08997 * 109.47212 * 330.00228 * 14 13 12 40 40 H 1.09003 * 109.47606 * 299.99755 * 15 14 13 41 41 H 1.09005 * 109.47098 * 60.00370 * 15 14 13 42 42 H 0.97006 * 120.00151 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.02114 * 26.36651 * 26 7 6 44 44 H 1.09008 * 110.05822 * 264.99565 * 26 7 6 45 45 H 1.08000 * 120.50062 * 180.25485 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2874 -1.1319 0.4038 5 7 4.6067 -1.0906 0.3898 6 6 5.2499 0.0024 0.0014 7 7 6.6305 0.0034 0.0024 8 6 7.1622 -0.1858 1.3774 9 6 8.6076 0.3708 1.2826 10 6 8.4475 1.5624 0.3268 11 6 9.6590 1.6783 -0.6107 12 6 9.7938 3.2129 -0.7528 13 7 9.1736 3.7752 0.4540 14 6 9.3740 5.1484 0.9237 15 6 8.3124 6.0593 0.3040 16 6 8.5181 7.4718 0.7876 17 1 9.3256 7.6972 1.4685 18 6 7.6755 8.4762 0.3608 19 7 6.6926 8.2018 -0.4687 20 14 7.9310 10.2270 0.9597 21 1 9.0976 10.2710 1.8775 22 1 8.1827 11.1161 -0.2029 23 1 6.7162 10.6860 1.6801 24 6 8.3969 2.8650 1.0737 25 8 7.7538 3.0669 2.0820 26 6 7.1609 1.3072 -0.4605 27 7 4.6057 1.0963 -0.3826 28 6 3.2865 1.1344 -0.4023 29 1 2.7704 -2.0254 0.7213 30 1 6.5769 0.3856 2.0977 31 1 7.1715 -1.2427 1.6438 32 1 9.2821 -0.3747 0.8615 33 1 8.9586 0.7032 2.2595 34 1 9.4533 1.2129 -1.5746 35 1 10.5499 1.2482 -0.1529 36 1 10.8452 3.4959 -0.8033 37 1 9.2668 3.5568 -1.6427 38 1 9.2882 5.1770 2.0099 39 1 10.3652 5.4924 0.6284 40 1 8.3982 6.0308 -0.7823 41 1 7.3211 5.7154 0.5994 42 1 6.0995 8.9084 -0.7687 43 1 6.4373 2.0972 -0.2592 44 1 7.3791 1.2645 -1.5276 45 1 2.7686 2.0273 -0.7201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274719110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 73.597726 kcal Electronic energy + Delta-G solvation = -29203.946627 eV Core-core repulsion = 25222.518471 eV Total energy + Delta-G solvation = -3981.428156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.89995 -40.78893 -38.22274 -36.88359 -36.08749 -34.33629 -34.30929 -33.03761 -31.70808 -30.16106 -29.21382 -28.07847 -25.64969 -24.99254 -24.91306 -23.26719 -22.22039 -21.76748 -20.37951 -19.50815 -18.87780 -18.10076 -17.98648 -16.66435 -16.12776 -15.96119 -15.57979 -15.25387 -14.94480 -14.67705 -14.40205 -14.36732 -14.12897 -13.91158 -13.81295 -13.42596 -13.23934 -13.14464 -12.85123 -12.69954 -12.53795 -12.41174 -12.27069 -11.94157 -11.63310 -11.61676 -11.36327 -11.32954 -11.00444 -10.94802 -10.87411 -10.67845 -10.40845 -10.03140 -9.88672 -9.59880 -9.39659 -9.14236 -8.80608 -8.40002 -8.07579 -6.04749 -4.08269 0.02230 0.68021 2.25002 2.51899 2.77271 2.92979 3.28819 3.35941 3.39272 3.42227 3.45185 3.49873 3.65152 4.01395 4.11458 4.20866 4.35480 4.42892 4.43680 4.64963 4.74177 4.93193 5.03345 5.18071 5.25376 5.31544 5.31920 5.35806 5.57876 5.60557 5.64372 5.68036 5.72509 5.79782 5.91853 5.98905 6.03031 6.12615 6.23645 6.41376 6.72454 6.76860 6.93877 7.11991 7.45212 7.63564 7.65038 7.80570 7.94610 8.30505 8.58529 8.98490 9.56013 11.06543 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009818 B = 0.003109 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.139883 B = 9002.650084 C =11257.063111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.267 3.733 3 C -0.175 4.175 4 C 0.228 3.772 5 N -0.523 5.523 6 C 0.515 3.485 7 N -0.443 5.443 8 C 0.056 3.944 9 C -0.099 4.099 10 C -0.111 4.111 11 C -0.118 4.118 12 C 0.099 3.901 13 N -0.608 5.608 14 C 0.128 3.872 15 C 0.012 3.988 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.525 3.475 25 O -0.527 6.527 26 C 0.061 3.939 27 N -0.540 5.540 28 C 0.235 3.765 29 H 0.181 0.819 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.018 0.982 41 H 0.021 0.979 42 H 0.260 0.740 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 -21.532 -1.751 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.050 4.050 3 C -0.186 4.186 4 C 0.056 3.944 5 N -0.239 5.239 6 C 0.160 3.840 7 N -0.161 5.161 8 C -0.069 4.069 9 C -0.138 4.138 10 C -0.115 4.115 11 C -0.156 4.156 12 C -0.025 4.025 13 N -0.341 5.341 14 C 0.008 3.992 15 C -0.026 4.026 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.311 3.689 25 O -0.403 6.403 26 C -0.066 4.066 27 N -0.258 5.258 28 C 0.064 3.936 29 H 0.198 0.802 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.161 -21.653 -1.612 21.744 hybrid contribution -0.742 1.679 0.406 1.880 sum 0.418 -19.974 -1.206 20.015 Atomic orbital electron populations 1.81308 1.11619 1.06822 1.08685 1.24976 0.91754 0.94410 0.93856 1.17602 0.86962 1.00031 1.13956 1.23314 0.88430 0.96052 0.86569 1.68163 1.09229 1.26713 1.19824 1.21450 0.91934 0.84181 0.86401 1.61243 1.00590 1.31769 1.22523 1.23353 0.95193 1.02968 0.85354 1.22408 0.96071 0.95452 0.99830 1.21584 0.97038 0.95722 0.97162 1.22680 0.96910 0.96000 0.99976 1.22134 0.98977 0.92518 0.88846 1.48627 1.46884 1.13100 1.25461 1.21828 1.00607 0.77459 0.99320 1.19405 0.93850 0.93203 0.96124 1.21117 1.14289 0.92606 1.28111 0.92460 1.24994 0.95064 0.99164 0.95016 1.69979 1.17207 1.32901 1.32925 0.86513 0.78167 0.84571 0.78606 1.19671 1.20980 1.20949 1.20085 0.79165 0.85532 0.84138 1.90705 1.42840 1.81993 1.24798 1.22839 0.94682 0.89170 0.99869 1.68550 1.09838 1.26325 1.21079 1.23411 0.88583 0.96104 0.85493 0.80178 0.91648 0.88012 0.89158 0.89393 0.88857 0.89659 0.90394 0.90839 0.91169 0.91538 0.96408 0.96110 0.92985 0.88390 0.88240 0.80121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.80 18.54 41.84 0.78 -4.02 16 2 C 0.27 2.50 15.40 -22.47 -0.35 2.15 16 3 C -0.18 -1.48 5.77 -106.56 -0.61 -2.09 16 4 C 0.23 1.78 11.06 -16.78 -0.19 1.59 16 5 N -0.52 -5.44 10.18 -13.63 -0.14 -5.58 16 6 C 0.52 6.19 6.97 -322.97 -2.25 3.94 16 7 N -0.44 -5.12 5.36 -171.63 -0.92 -6.04 16 8 C 0.06 0.60 6.32 -1.72 -0.01 0.59 16 9 C -0.10 -0.98 6.02 -25.27 -0.15 -1.13 16 10 C -0.11 -1.33 0.77 -155.26 -0.12 -1.45 16 11 C -0.12 -1.07 6.10 -25.51 -0.16 -1.23 16 12 C 0.10 1.20 7.37 -2.94 -0.02 1.17 16 13 N -0.61 -10.35 2.94 -172.53 -0.51 -10.85 16 14 C 0.13 2.60 5.88 -4.04 -0.02 2.58 16 15 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 16 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.53 9.06 6.48 -11.22 -0.07 8.98 16 25 O -0.53 -11.28 17.45 5.56 0.10 -11.18 16 26 C 0.06 0.76 5.69 -3.13 -0.02 0.74 16 27 N -0.54 -6.72 8.10 -13.63 -0.11 -6.83 16 28 C 0.24 2.29 11.06 -16.77 -0.19 2.10 16 29 H 0.18 0.77 8.06 -52.49 -0.42 0.34 16 30 H 0.07 0.83 7.99 -51.93 -0.41 0.42 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.67 7.83 -51.93 -0.41 0.26 16 33 H 0.09 0.94 7.81 -51.93 -0.41 0.53 16 34 H 0.09 0.67 7.44 -51.93 -0.39 0.28 16 35 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.51 7.95 -51.93 -0.41 1.10 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.10 1.53 6.05 -51.93 -0.31 1.22 16 44 H 0.10 1.08 7.31 -51.92 -0.38 0.70 16 45 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -35.44 382.72 -10.09 -45.53 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.05 Total: -2.17 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -4.72 Total: 4.82 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.16 Total: -59.23 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.10 Total: -11.18 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.44 -10.09 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274719110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.128 kcal (2) G-P(sol) polarization free energy of solvation -35.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds