Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40118 * 120.87566 * 328.21683 * 3 2 1 5 5 N 1.31988 * 119.00980 * 179.97438 * 4 3 2 6 6 C 1.32634 * 120.90130 * 359.97438 * 5 4 3 7 7 N 1.38058 * 119.03722 * 179.97438 * 6 5 4 8 8 C 1.48619 * 111.00101 * 297.44828 * 7 6 5 9 9 C 1.55166 * 103.36060 * 200.84751 * 8 7 6 10 10 C 1.53604 * 102.66226 * 36.57578 * 9 8 7 11 11 C 1.53624 * 110.84274 * 99.49529 * 10 9 8 12 12 C 1.54712 * 101.50949 * 144.61978 * 11 10 9 13 13 N 1.46875 * 105.51886 * 335.46911 * 12 11 10 14 14 C 1.46498 * 124.37328 * 196.78985 * 13 12 11 15 15 C 1.53001 * 109.47428 * 89.99962 * 14 13 12 16 16 C 1.50697 * 109.46995 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00449 * 359.72153 * 16 15 14 18 18 C 1.37885 * 119.99686 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.72095 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.72528 * 18 16 15 21 21 H 1.48493 * 109.47326 * 90.00142 * 20 18 16 22 22 H 1.48506 * 109.46545 * 209.99892 * 20 18 16 23 23 H 1.48498 * 109.47210 * 329.99603 * 20 18 16 24 24 C 1.34762 * 111.25747 * 17.05242 * 13 12 11 25 25 O 1.21278 * 125.12999 * 178.76002 * 24 13 12 26 26 C 1.48183 * 111.00015 * 180.02562 * 7 6 5 27 27 N 1.32635 * 121.92891 * 0.26273 * 6 5 4 28 28 C 1.31996 * 120.90180 * 359.46819 * 27 6 5 29 29 H 1.08008 * 120.49504 * 359.97438 * 4 3 2 30 30 H 1.09005 * 110.64266 * 319.31805 * 8 7 6 31 31 H 1.09000 * 110.64537 * 82.21154 * 8 7 6 32 32 H 1.09000 * 110.77157 * 278.28078 * 9 8 7 33 33 H 1.09004 * 110.77097 * 154.87126 * 9 8 7 34 34 H 1.09000 * 111.02052 * 26.56907 * 11 10 9 35 35 H 1.08992 * 111.02017 * 262.67798 * 11 10 9 36 36 H 1.08998 * 110.23569 * 216.45746 * 12 11 10 37 37 H 1.09002 * 110.30474 * 94.51674 * 12 11 10 38 38 H 1.08998 * 109.47182 * 329.99808 * 14 13 12 39 39 H 1.09006 * 109.47506 * 210.00100 * 14 13 12 40 40 H 1.08998 * 109.47065 * 59.99774 * 15 14 13 41 41 H 1.09001 * 109.46892 * 300.00038 * 15 14 13 42 42 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.02132 * 26.35966 * 26 7 6 44 44 H 1.09000 * 110.01785 * 264.96280 * 26 7 6 45 45 H 1.07997 * 120.49633 * 180.26046 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2875 -1.0213 0.6334 5 7 4.6067 -0.9845 0.6103 6 6 5.2500 0.0010 -0.0013 7 7 6.6305 0.0017 -0.0013 8 6 7.1631 0.1081 1.3821 9 6 8.6085 0.6314 1.1706 10 6 8.4480 1.5935 -0.0160 11 6 8.3683 3.0495 0.4678 12 6 9.1114 3.7930 -0.6674 13 7 10.0018 2.7948 -1.2739 14 6 11.1381 3.1179 -2.1403 15 6 12.3954 3.2972 -1.2870 16 6 13.5640 3.6302 -2.1782 17 1 13.4251 3.7019 -3.2467 18 6 14.8119 3.8383 -1.6298 19 7 14.9810 3.7515 -0.3284 20 14 16.2621 4.2434 -2.7352 21 1 16.3627 5.7158 -2.9002 22 1 17.5119 3.7277 -2.1209 23 1 16.0648 3.6088 -4.0632 24 6 9.6353 1.5430 -0.9352 25 8 10.1827 0.5290 -1.3133 26 6 7.1610 1.1776 -0.7305 27 7 4.6058 0.9889 -0.6082 28 6 3.2865 1.0225 -0.6348 29 1 2.7703 -1.8272 1.1331 30 1 6.5783 0.8194 1.9654 31 1 7.1723 -0.8683 1.8665 32 1 9.2825 -0.1867 0.9166 33 1 8.9603 1.1632 2.0547 34 1 8.8843 3.1740 1.4198 35 1 7.3326 3.3813 0.5400 36 1 9.6936 4.6190 -0.2590 37 1 8.4003 4.1625 -1.4063 38 1 10.9315 4.0413 -2.6813 39 1 11.2947 2.3071 -2.8519 40 1 12.6020 2.3739 -0.7459 41 1 12.2389 4.1080 -0.5754 42 1 15.8588 3.8982 0.0574 43 1 6.4376 1.9925 -0.7010 44 1 7.3788 0.9086 -1.7641 45 1 2.7687 1.8278 -1.1345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274719111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = 74.531125 kcal Electronic energy + Delta-G solvation = -28750.741588 eV Core-core repulsion = 24769.353907 eV Total energy + Delta-G solvation = -3981.387681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.05442 -40.83227 -38.36552 -37.06219 -36.03433 -34.52033 -34.34613 -33.08442 -31.75877 -30.24453 -29.20089 -28.20462 -25.75377 -25.16540 -24.88729 -23.39696 -22.26614 -21.80207 -20.34889 -19.70105 -18.77882 -18.25333 -18.21652 -16.63667 -16.37665 -15.84026 -15.62831 -15.41328 -15.29318 -14.65229 -14.45818 -14.39575 -14.20497 -14.09377 -13.81502 -13.49623 -13.35136 -13.14946 -12.95591 -12.73281 -12.65195 -12.40001 -12.19321 -12.05761 -11.86499 -11.66124 -11.52103 -11.31716 -11.06074 -10.96366 -10.77823 -10.71533 -10.51882 -10.01266 -9.89714 -9.80066 -9.39544 -9.14014 -8.91497 -8.39362 -8.05364 -6.04620 -4.07990 -0.16046 0.47966 2.06588 2.34953 2.65013 2.90095 3.22152 3.27871 3.29970 3.36063 3.38600 3.41973 3.54572 3.81362 4.01491 4.19545 4.28706 4.38574 4.43904 4.45780 4.71916 4.82586 4.92804 5.01251 5.14525 5.19675 5.29653 5.31816 5.46562 5.54179 5.56683 5.68398 5.70875 5.78250 5.91038 5.96797 6.00041 6.06655 6.12417 6.44366 6.59358 6.78111 6.93698 6.96066 7.46127 7.46971 7.64168 7.81643 7.94956 8.31177 8.62496 8.98639 9.56240 11.06726 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032678 B = 0.002018 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.637865 B =13874.408287 C =14149.102039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.266 3.734 3 C -0.178 4.178 4 C 0.232 3.768 5 N -0.521 5.521 6 C 0.517 3.483 7 N -0.440 5.440 8 C 0.060 3.940 9 C -0.105 4.105 10 C -0.111 4.111 11 C -0.122 4.122 12 C 0.101 3.899 13 N -0.610 5.610 14 C 0.127 3.873 15 C 0.012 3.988 16 C -0.523 4.523 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.528 3.472 25 O -0.521 6.521 26 C 0.067 3.933 27 N -0.548 5.548 28 C 0.233 3.767 29 H 0.182 0.818 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.021 0.979 41 H 0.017 0.983 42 H 0.261 0.739 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.739 -3.520 5.324 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.051 4.051 3 C -0.189 4.189 4 C 0.060 3.940 5 N -0.237 5.237 6 C 0.163 3.837 7 N -0.158 5.158 8 C -0.065 4.065 9 C -0.144 4.144 10 C -0.115 4.115 11 C -0.160 4.160 12 C -0.023 4.023 13 N -0.343 5.343 14 C 0.007 3.993 15 C -0.026 4.026 16 C -0.562 4.562 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.314 3.686 25 O -0.396 6.396 26 C -0.060 4.060 27 N -0.267 5.267 28 C 0.061 3.939 29 H 0.198 0.802 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -24.656 -4.497 4.954 25.547 hybrid contribution 0.163 0.861 -0.387 0.958 sum -24.493 -3.636 4.567 25.179 Atomic orbital electron populations 1.81324 1.11642 1.07192 1.08247 1.24993 0.91765 0.94341 0.94019 1.17581 0.86919 1.03368 1.10985 1.23364 0.88408 0.93937 0.88341 1.68208 1.09209 1.24528 1.21803 1.21479 0.91848 0.84417 0.85987 1.61086 1.00218 1.39916 1.14565 1.23353 0.95009 1.02871 0.85264 1.22526 0.95940 0.99282 0.96628 1.21564 0.95483 0.97369 0.97073 1.22759 1.01720 0.92303 0.99202 1.22077 0.92900 0.92549 0.94754 1.48635 1.30125 1.06149 1.49403 1.21820 0.84859 1.00061 0.92512 1.19401 0.90276 0.97540 0.95342 1.21087 0.93358 1.48183 0.93525 0.92466 1.25000 0.98922 0.95311 0.95026 1.69970 1.23347 1.49503 1.10312 0.86549 0.81949 0.78465 0.80775 1.20646 1.21176 1.19784 1.19981 0.83941 0.83650 0.81077 1.90717 1.58384 1.33604 1.56932 1.22806 0.93739 0.91117 0.98312 1.68494 1.09691 1.24842 1.23681 1.23324 0.88606 0.94054 0.87869 0.80153 0.92188 0.87789 0.88538 0.89038 0.89332 0.89424 0.89922 0.91417 0.91563 0.91066 0.96102 0.96449 0.92934 0.88237 0.88936 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -3.75 18.54 41.84 0.78 -2.97 16 2 C 0.27 1.75 15.40 -22.47 -0.35 1.40 16 3 C -0.18 -0.96 5.77 -106.56 -0.61 -1.58 16 4 C 0.23 1.31 11.06 -16.78 -0.19 1.12 16 5 N -0.52 -4.50 10.18 -13.63 -0.14 -4.64 16 6 C 0.52 4.96 6.97 -322.95 -2.25 2.71 16 7 N -0.44 -4.76 5.36 -171.64 -0.92 -5.68 16 8 C 0.06 0.54 6.32 -1.73 -0.01 0.53 16 9 C -0.11 -1.14 6.20 -25.27 -0.16 -1.30 16 10 C -0.11 -1.33 0.77 -155.26 -0.12 -1.45 16 11 C -0.12 -1.17 6.24 -25.51 -0.16 -1.32 16 12 C 0.10 1.22 7.36 -2.94 -0.02 1.20 16 13 N -0.61 -10.41 2.94 -172.52 -0.51 -10.92 16 14 C 0.13 2.61 5.89 -4.04 -0.02 2.58 16 15 C 0.01 0.31 5.30 -27.88 -0.15 0.17 16 16 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.53 9.21 6.63 -11.22 -0.07 9.14 16 25 O -0.52 -11.39 17.09 5.56 0.09 -11.29 16 26 C 0.07 0.74 5.69 -3.13 -0.02 0.72 16 27 N -0.55 -4.52 8.10 -13.63 -0.11 -4.63 16 28 C 0.23 1.29 11.06 -16.77 -0.19 1.10 16 29 H 0.18 0.46 8.06 -52.48 -0.42 0.04 16 30 H 0.06 0.45 7.99 -51.93 -0.41 0.04 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.28 7.54 -51.93 -0.39 0.89 16 33 H 0.09 0.83 7.44 -51.93 -0.39 0.44 16 34 H 0.09 0.81 7.50 -51.93 -0.39 0.42 16 35 H 0.09 0.61 7.41 -51.93 -0.38 0.23 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.10 0.93 5.60 -51.93 -0.29 0.64 16 44 H 0.09 1.19 7.73 -51.93 -0.40 0.79 16 45 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -35.55 381.73 -10.06 -45.61 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.99 Total: -3.54 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -4.73 Total: 1.71 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.16 Total: -54.69 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.55 -10.06 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274719111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.140 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds