Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99782 * 2 1 4 4 H 1.48497 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47330 * 300.00054 * 3 2 1 6 6 H 1.48502 * 109.47450 * 59.99476 * 3 2 1 7 7 C 1.38804 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00511 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00078 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46583 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61355 * 175.00128 * 11 10 9 13 13 C 1.53778 * 87.08713 * 139.97528 * 12 11 10 14 14 N 1.46499 * 113.61069 * 89.11223 * 13 12 11 15 15 C 1.34784 * 119.99893 * 156.53341 * 14 13 12 16 16 O 1.21597 * 119.99617 * 359.97438 * 15 14 13 17 17 C 1.47420 * 119.99760 * 179.72621 * 15 14 13 18 18 C 1.41366 * 126.41216 * 0.02845 * 17 15 14 19 19 N 1.30438 * 108.07700 * 179.97438 * 18 17 15 20 20 N 1.39935 * 108.91976 * 359.97438 * 19 18 17 21 21 C 1.39912 * 125.78015 * 179.97438 * 20 19 18 22 22 C 1.39327 * 120.85607 * 179.69703 * 21 20 19 23 23 C 1.38010 * 119.07868 * 179.73214 * 22 21 20 24 24 N 1.31943 * 120.82931 * 0.55617 * 23 22 21 25 25 C 1.31930 * 121.88649 * 359.71820 * 24 23 22 26 26 C 1.38007 * 120.83637 * 359.97438 * 25 24 23 27 27 C 1.34603 * 108.44569 * 359.73387 * 20 19 18 28 28 C 1.53786 * 87.17071 * 334.52679 * 13 12 11 29 29 H 0.97002 * 120.00481 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99232 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47222 * 59.99829 * 10 9 7 32 32 H 1.08997 * 109.46768 * 299.99805 * 10 9 7 33 33 H 1.08997 * 112.85495 * 43.80337 * 11 10 9 34 34 H 1.09002 * 113.61251 * 25.42649 * 12 11 10 35 35 H 1.08999 * 113.69326 * 254.54368 * 12 11 10 36 36 H 1.08998 * 113.61955 * 219.93772 * 13 12 11 37 37 H 0.97005 * 120.00261 * 336.53553 * 14 13 12 38 38 H 1.08004 * 125.95901 * 359.96081 * 18 17 15 39 39 H 1.07997 * 120.46487 * 359.97438 * 22 21 20 40 40 H 1.07996 * 119.58710 * 180.29319 * 23 22 21 41 41 H 1.08009 * 119.58325 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.46007 * 180.02562 * 26 25 24 43 43 H 1.08000 * 126.31825 * 180.30724 * 27 20 19 44 44 H 1.08999 * 113.61473 * 140.01709 * 28 13 12 45 45 H 1.09001 * 113.61108 * 270.91930 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 6 1.0641 -4.8196 0.0008 12 6 1.7308 -6.2000 -0.1209 13 6 0.7042 -6.6996 0.9092 14 7 -0.5385 -7.1906 0.3086 15 6 -1.3118 -8.0664 0.9806 16 8 -0.9776 -8.4493 2.0853 17 6 -2.5654 -8.5558 0.3787 18 6 -3.0835 -8.1992 -0.8874 19 7 -4.2065 -8.8397 -1.0601 20 7 -4.4586 -9.6264 0.0694 21 6 -5.5693 -10.4563 0.2570 22 6 -5.7147 -11.2025 1.4246 23 6 -6.8276 -12.0049 1.5736 24 7 -7.7402 -12.0786 0.6235 25 6 -7.6354 -11.3921 -0.4982 26 6 -6.5556 -10.5620 -0.7213 27 6 -3.4490 -9.4535 0.9428 28 6 0.6147 -5.2485 1.4106 29 1 -0.4851 0.8400 -0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.6843 -3.7140 0.8921 32 1 2.6856 -3.7148 -0.8878 33 1 0.2388 -4.6705 -0.6954 34 1 2.7587 -6.2218 0.2411 35 1 1.6191 -6.6552 -1.1050 36 1 1.1216 -7.3899 1.6423 37 1 -0.8049 -6.8854 -0.5729 38 1 -2.6288 -7.5156 -1.5890 39 1 -4.9689 -11.1506 2.2040 40 1 -6.9509 -12.5831 2.4774 41 1 -8.4048 -11.4801 -1.2511 42 1 -6.4762 -10.0025 -1.6417 43 1 -3.3499 -9.9278 1.9079 44 1 -0.3985 -4.9350 1.6616 45 1 1.3380 -5.0108 2.1906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275299152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 118.843203 kcal Electronic energy + Delta-G solvation = -27351.581403 eV Core-core repulsion = 23372.115238 eV Total energy + Delta-G solvation = -3979.466165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30593 -40.54263 -39.92817 -38.14464 -34.99346 -34.52750 -33.14251 -32.11599 -31.00681 -30.95662 -30.31611 -26.92622 -25.50394 -25.13437 -24.44683 -23.52280 -22.70377 -21.68728 -21.33060 -20.48187 -19.23585 -19.06737 -17.21449 -17.02028 -16.67571 -16.39802 -16.15417 -16.00967 -15.54060 -14.91217 -14.87292 -14.79815 -14.48272 -14.36299 -14.23993 -13.96971 -13.69838 -13.36452 -13.28664 -12.77774 -12.45925 -12.35686 -12.13023 -11.65859 -11.60231 -11.48218 -11.03563 -10.84281 -10.48802 -10.33735 -10.24433 -10.07355 -10.04792 -9.88586 -9.87887 -9.82210 -9.61052 -9.15781 -8.92058 -8.83040 -6.89168 -5.75328 -3.03395 0.02445 0.45090 1.37522 1.54768 1.73715 3.02655 3.16055 3.21903 3.43822 3.49465 3.51740 3.70839 3.83320 4.00796 4.23252 4.28109 4.48048 4.58517 4.58944 4.68385 4.73452 4.82866 4.85257 5.04018 5.11523 5.14380 5.14773 5.19939 5.38004 5.59163 5.72953 5.81581 5.87306 5.88572 5.94067 6.01731 6.11388 6.24644 6.31598 6.32885 6.43053 6.63159 6.79328 6.89114 6.94392 7.32997 7.42124 7.71682 8.11542 8.43961 9.55048 10.14432 10.48658 11.47697 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.001724 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.124686 B =16238.267296 C =17107.407497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 C -0.138 4.138 13 C 0.118 3.882 14 N -0.702 5.702 15 C 0.597 3.403 16 O -0.546 6.546 17 C -0.272 4.272 18 C 0.099 3.901 19 N -0.285 5.285 20 N -0.320 5.320 21 C 0.203 3.797 22 C -0.195 4.195 23 C 0.129 3.871 24 N -0.492 5.492 25 C 0.125 3.875 26 C -0.171 4.171 27 C 0.130 3.870 28 C -0.139 4.139 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.401 0.599 38 H 0.202 0.798 39 H 0.146 0.854 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.152 0.848 43 H 0.195 0.805 44 H 0.069 0.931 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 -27.136 -0.593 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.132 4.132 12 C -0.176 4.176 13 C 0.013 3.987 14 N -0.352 5.352 15 C 0.384 3.616 16 O -0.424 6.424 17 C -0.286 4.286 18 C -0.091 4.091 19 N -0.101 5.101 20 N -0.093 5.093 21 C 0.102 3.898 22 C -0.218 4.218 23 C -0.028 4.028 24 N -0.201 5.201 25 C -0.032 4.032 26 C -0.193 4.193 27 C -0.016 4.016 28 C -0.177 4.177 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.235 0.765 38 H 0.218 0.782 39 H 0.163 0.837 40 H 0.185 0.815 41 H 0.185 0.815 42 H 0.170 0.830 43 H 0.212 0.788 44 H 0.087 0.913 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.837 -28.073 -0.461 30.873 hybrid contribution 1.483 2.047 -0.071 2.529 sum -11.354 -26.026 -0.532 28.400 Atomic orbital electron populations 1.69667 1.05103 1.25463 1.58048 1.24736 0.95526 0.97687 1.03195 0.86124 0.78789 0.84179 0.77159 1.20565 1.21914 1.21912 1.19296 0.91070 0.84277 1.42274 0.91176 1.42355 1.05839 1.00007 1.89384 1.20642 0.93026 0.85227 0.97675 1.22811 0.99077 0.94204 0.97104 1.23310 0.98884 0.96567 0.98859 1.21945 0.84128 0.96029 0.96607 1.45429 1.23344 1.45305 1.21119 1.17068 0.81889 0.78207 0.84470 1.90784 1.72947 1.59017 1.19662 1.20407 1.01104 1.08813 0.98235 1.24381 0.91869 0.97038 0.95787 1.77295 1.18566 1.09316 1.04938 1.45593 1.16209 1.33489 1.13967 1.17827 0.85929 0.90574 0.95432 1.21969 1.02209 1.00173 0.97439 1.22717 0.88071 0.94419 0.97586 1.67734 1.28943 1.21746 1.01726 1.22801 0.95610 0.90360 0.94388 1.21994 0.94469 1.02248 1.00564 1.23066 0.86514 0.95980 0.96057 1.23467 1.02528 0.94080 0.97669 0.93625 0.78344 0.96203 0.96411 0.89409 0.88653 0.91207 0.88223 0.76479 0.78185 0.83655 0.81454 0.81545 0.83040 0.78850 0.91260 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 2 C -0.02 -0.45 5.50 -17.44 -0.10 -0.55 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.43 5.60 -59.91 -0.34 -18.76 16 10 C 0.16 3.15 6.10 -4.04 -0.02 3.13 16 11 C -0.11 -1.68 3.65 -89.66 -0.33 -2.01 16 12 C -0.14 -1.56 7.38 -25.92 -0.19 -1.75 16 13 C 0.12 1.41 4.30 -67.12 -0.29 1.13 16 14 N -0.70 -7.53 5.26 -54.09 -0.28 -7.81 16 15 C 0.60 7.24 7.81 -12.52 -0.10 7.14 16 16 O -0.55 -8.41 16.52 5.28 0.09 -8.32 16 17 C -0.27 -2.74 6.13 -105.05 -0.64 -3.38 16 18 C 0.10 0.87 11.50 -16.95 -0.20 0.67 16 19 N -0.28 -2.87 11.87 30.88 0.37 -2.50 16 20 N -0.32 -2.97 3.76 -10.03 -0.04 -3.01 16 21 C 0.20 1.63 6.73 -83.36 -0.56 1.07 16 22 C -0.20 -1.18 9.52 -39.26 -0.37 -1.55 16 23 C 0.13 0.75 11.18 -17.59 -0.20 0.56 16 24 N -0.49 -3.70 10.36 -13.32 -0.14 -3.84 16 25 C 0.13 0.80 11.17 -17.59 -0.20 0.60 16 26 C -0.17 -1.24 9.73 -39.26 -0.38 -1.62 16 27 C 0.13 1.17 10.64 -16.42 -0.17 1.00 16 28 C -0.14 -2.00 7.45 -25.77 -0.19 -2.19 16 29 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 31 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 1.26 7.50 -51.93 -0.39 0.87 16 37 H 0.40 3.37 7.66 -40.82 -0.31 3.05 16 38 H 0.20 1.11 7.50 -52.48 -0.39 0.71 16 39 H 0.15 0.55 6.85 -52.49 -0.36 0.19 16 40 H 0.17 0.49 8.06 -52.49 -0.42 0.06 16 41 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 42 H 0.15 1.04 7.78 -52.49 -0.41 0.63 16 43 H 0.19 1.28 7.09 -52.49 -0.37 0.91 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -36.14 386.78 -8.77 -44.91 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.87 Total: 8.26 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -4.09 Total: -4.59 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.30 Total: -63.56 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.14 -8.77 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275299152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.756 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds