Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.85254 * 43.80385 * 11 10 9 13 13 C 1.53781 * 113.61399 * 174.99933 * 11 10 9 14 14 C 1.53785 * 87.08078 * 139.97945 * 13 11 10 15 15 H 1.09004 * 113.61397 * 220.02153 * 14 13 11 16 16 N 1.46498 * 113.61392 * 89.19929 * 14 13 11 17 17 C 1.34779 * 119.99789 * 154.99842 * 16 14 13 18 18 O 1.21544 * 120.00203 * 0.02562 * 17 16 14 19 19 C 1.47937 * 119.99682 * 180.02562 * 17 16 14 20 20 C 1.39501 * 119.59269 * 179.73133 * 19 17 16 21 21 C 1.38235 * 119.18769 * 179.75125 * 20 19 17 22 22 C 1.39788 * 118.38449 * 0.51012 * 21 20 19 23 23 C 1.48272 * 120.43623 * 179.70702 * 22 21 20 24 24 C 1.40948 * 126.24649 * 359.71339 * 23 22 21 25 25 N 1.30629 * 108.06998 * 179.81724 * 24 23 22 26 26 N 1.40000 * 108.56579 * 0.44061 * 25 24 23 27 27 H 0.97003 * 125.87290 * 179.71461 * 26 25 24 28 28 C 1.34711 * 108.25949 * 359.71590 * 26 25 24 29 29 C 1.39742 * 119.12391 * 359.72933 * 22 21 20 30 30 N 1.31298 * 120.73052 * 0.02562 * 29 22 21 31 31 C 1.53785 * 113.61053 * 272.49703 * 11 10 9 32 32 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 35 35 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 36 36 H 1.08996 * 113.61569 * 254.53055 * 13 11 10 37 37 H 1.09004 * 113.60977 * 25.34912 * 13 11 10 38 38 H 0.96999 * 119.99828 * 334.99989 * 16 14 13 39 39 H 1.07998 * 120.40947 * 359.97192 * 20 19 17 40 40 H 1.07997 * 120.80552 * 180.21698 * 21 20 19 41 41 H 1.08002 * 125.96469 * 359.97438 * 24 23 22 42 42 H 1.08000 * 126.20252 * 180.02562 * 28 26 25 43 43 H 1.08002 * 119.63504 * 179.97438 * 29 22 21 44 44 H 1.08995 * 113.61917 * 334.56530 * 31 11 10 45 45 H 1.08995 * 113.61487 * 105.47453 * 31 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 1 0.2377 -4.6702 -0.6956 13 6 1.7300 -6.2001 -0.1230 14 6 0.7040 -6.7001 0.9077 15 1 1.1222 -7.3896 1.6411 16 7 -0.5384 -7.1924 0.3077 17 6 -1.2950 -8.0920 0.9672 18 8 -0.9468 -8.4943 2.0600 19 6 -2.5494 -8.5896 0.3610 20 6 -3.3231 -9.5248 1.0485 21 6 -4.4963 -9.9803 0.4766 22 6 -4.8565 -9.4893 -0.7817 23 6 -6.1020 -9.9517 -1.4400 24 6 -7.0204 -10.8871 -0.9224 25 7 -7.9866 -11.0291 -1.7899 26 7 -7.7218 -10.2056 -2.8908 27 1 -8.2756 -10.1196 -3.6825 28 6 -6.5657 -9.5533 -2.6615 29 6 -4.0270 -8.5573 -1.4110 30 7 -2.9223 -8.1446 -0.8337 31 6 0.6160 -5.2483 1.4074 32 1 -0.4850 0.8401 0.0004 33 1 0.3554 -2.3881 0.0005 34 1 2.6845 -3.7147 -0.8894 35 1 2.6845 -3.7147 0.8905 36 1 1.6165 -6.6538 -1.1075 37 1 2.7587 -6.2218 0.2370 38 1 -0.8165 -6.8711 -0.5642 39 1 -3.0113 -9.8860 2.0174 40 1 -5.1170 -10.7015 0.9874 41 1 -6.9407 -11.3957 0.0271 42 1 -6.0917 -8.8435 -3.3232 43 1 -4.2971 -8.1728 -2.3835 44 1 1.3395 -5.0103 2.1870 45 1 -0.3970 -4.9336 1.6582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277001057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 106.823255 kcal Electronic energy + Delta-G solvation = -27332.159740 eV Core-core repulsion = 23352.172350 eV Total energy + Delta-G solvation = -3979.987389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85585 -40.72554 -39.60533 -38.06454 -34.52617 -33.97208 -32.91620 -32.34825 -31.92882 -30.80278 -29.34672 -26.83867 -25.43400 -24.95716 -24.35716 -23.26565 -22.11434 -21.65709 -21.23003 -20.69379 -19.01838 -18.75254 -18.20967 -17.01624 -16.69568 -15.72985 -15.67677 -15.42361 -15.39971 -15.13796 -14.89988 -14.73014 -14.33541 -14.05833 -13.86219 -13.68975 -13.64052 -13.25871 -13.24031 -12.70664 -12.45503 -12.28940 -12.06969 -11.58906 -11.45597 -10.99292 -10.79937 -10.78102 -10.50350 -10.33819 -10.31192 -10.25950 -10.05097 -9.94453 -9.81483 -9.73768 -9.54819 -8.95968 -8.79295 -8.45507 -6.85011 -5.71107 -2.99021 0.13979 0.92131 1.33719 2.11005 2.25136 2.80241 3.02914 3.47337 3.51280 3.52579 3.69794 3.85029 4.02850 4.19862 4.42278 4.46162 4.59534 4.62594 4.74848 4.75714 4.87484 4.89435 4.96645 5.19097 5.21542 5.28574 5.39420 5.62530 5.63542 5.78112 5.81726 5.91213 5.94504 6.00429 6.08699 6.18022 6.23514 6.31508 6.38376 6.49266 6.58510 6.68928 6.85107 6.99221 7.00651 7.33311 7.62757 7.74184 8.15360 8.48213 9.58918 10.18965 10.53480 11.51848 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.001864 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.665010 B =15016.317484 C =16489.954766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.089 0.911 13 C -0.137 4.137 14 C 0.113 3.887 15 H 0.100 0.900 16 N -0.688 5.688 17 C 0.573 3.427 18 O -0.537 6.537 19 C 0.067 3.933 20 C -0.099 4.099 21 C -0.086 4.086 22 C -0.022 4.022 23 C -0.207 4.207 24 C 0.072 3.928 25 N -0.292 5.292 26 N -0.469 5.469 27 H 0.444 0.556 28 C 0.087 3.913 29 C 0.097 3.903 30 N -0.447 5.447 31 C -0.138 4.138 32 H 0.255 0.745 33 H 0.383 0.617 34 H 0.018 0.982 35 H 0.020 0.980 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.412 0.588 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.189 0.811 42 H 0.186 0.814 43 H 0.160 0.840 44 H 0.091 0.909 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.786 -26.074 -5.217 29.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.107 0.893 13 C -0.176 4.176 14 C 0.008 3.992 15 H 0.118 0.882 16 N -0.338 5.338 17 C 0.358 3.642 18 O -0.414 6.414 19 C -0.070 4.070 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.025 4.025 23 C -0.219 4.219 24 C -0.115 4.115 25 N -0.113 5.113 26 N -0.175 5.175 27 H 0.289 0.711 28 C -0.063 4.063 29 C -0.065 4.065 30 N -0.158 5.158 31 C -0.177 4.177 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.248 0.752 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.206 0.794 42 H 0.203 0.797 43 H 0.177 0.823 44 H 0.110 0.890 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.934 -26.209 -5.091 30.116 hybrid contribution -0.121 1.110 -0.313 1.160 sum -14.055 -25.099 -5.404 29.269 Atomic orbital electron populations 1.69654 1.05086 1.25638 1.57948 1.24741 0.95531 0.97663 1.03254 0.86263 0.78491 0.83602 0.77811 1.21337 1.21747 1.21310 1.19208 0.90993 0.84314 1.42417 0.91300 1.42344 1.05852 0.99980 1.89372 1.20643 0.93018 0.85230 0.97636 1.22761 0.99136 0.94185 0.97116 0.89324 1.23308 0.98776 0.96602 0.98919 1.22002 0.84368 0.96105 0.96715 0.88175 1.45523 1.22948 1.42635 1.22658 1.17802 0.82658 0.79130 0.84595 1.90785 1.71603 1.58977 1.20029 1.21121 0.96490 0.97349 0.92088 1.22034 0.93588 0.95221 1.01111 1.21503 0.96169 0.99344 0.94166 1.19241 0.93068 0.96018 0.94207 1.18765 0.99246 1.06909 0.96977 1.24054 0.91188 0.96959 0.99339 1.77286 1.23367 1.14717 0.95897 1.46271 1.19273 1.33891 1.18074 0.71127 1.22758 0.88517 0.97433 0.97556 1.22726 0.89712 0.94337 0.99691 1.67472 1.15872 1.23303 1.09116 1.23412 1.02532 0.93980 0.97737 0.93554 0.78316 0.96422 0.96213 0.91184 0.88659 0.75156 0.83229 0.84052 0.79449 0.79727 0.82281 0.89038 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.91 5.60 -59.90 -0.34 -19.24 16 10 C 0.16 3.29 6.10 -4.04 -0.02 3.26 16 11 C -0.11 -1.82 3.63 -89.81 -0.33 -2.14 16 12 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 13 C -0.14 -1.74 7.39 -25.92 -0.19 -1.93 16 14 C 0.11 1.52 4.32 -67.11 -0.29 1.23 16 15 H 0.10 1.37 7.46 -51.93 -0.39 0.98 16 16 N -0.69 -8.95 5.25 -53.92 -0.28 -9.23 16 17 C 0.57 7.96 7.80 -12.29 -0.10 7.86 16 18 O -0.54 -8.79 15.91 5.33 0.08 -8.70 16 19 C 0.07 0.79 6.75 -82.99 -0.56 0.23 16 20 C -0.10 -0.95 9.61 -39.11 -0.38 -1.32 16 21 C -0.09 -0.62 9.69 -39.00 -0.38 -1.00 16 22 C -0.02 -0.16 5.90 -104.63 -0.62 -0.78 16 23 C -0.21 -1.29 6.05 -105.34 -0.64 -1.92 16 24 C 0.07 0.46 11.45 -17.04 -0.20 0.26 16 25 N -0.29 -2.16 12.66 30.82 0.39 -1.77 16 26 N -0.47 -2.18 7.32 30.64 0.22 -1.96 16 27 H 0.44 0.69 8.96 -182.67 -1.64 -0.95 16 28 C 0.09 0.38 11.40 -16.88 -0.19 0.18 16 29 C 0.10 0.78 10.73 -17.22 -0.18 0.60 16 30 N -0.45 -4.82 9.51 -9.55 -0.09 -4.91 16 31 C -0.14 -2.14 7.43 -25.91 -0.19 -2.33 16 32 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.38 10.44 7.67 -40.82 -0.31 10.12 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.41 4.99 8.02 -40.82 -0.33 4.66 16 39 H 0.15 1.35 7.63 -52.49 -0.40 0.95 16 40 H 0.14 0.61 7.16 -52.49 -0.38 0.24 16 41 H 0.19 0.69 7.41 -52.49 -0.39 0.30 16 42 H 0.19 0.18 7.30 -52.49 -0.38 -0.21 16 43 H 0.16 0.80 7.03 -52.49 -0.37 0.43 16 44 H 0.09 1.42 7.90 -51.93 -0.41 1.01 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -36.73 385.13 -10.07 -46.80 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.06 Total: 8.82 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -4.51 Total: -5.33 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: 0.63 Total: -65.14 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.73 -10.07 -46.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277001057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.626 kcal (2) G-P(sol) polarization free energy of solvation -36.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds