Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.85254 * 43.80385 * 11 10 9 13 13 C 1.53781 * 113.61399 * 174.99933 * 11 10 9 14 14 C 1.53785 * 87.08078 * 139.97945 * 13 11 10 15 15 H 1.09004 * 113.61397 * 220.02153 * 14 13 11 16 16 N 1.46498 * 113.61392 * 89.19929 * 14 13 11 17 17 C 1.34779 * 119.99789 * 154.99842 * 16 14 13 18 18 O 1.21544 * 120.00203 * 0.02562 * 17 16 14 19 19 C 1.47937 * 119.99682 * 180.02562 * 17 16 14 20 20 C 1.39501 * 119.59269 * 179.73133 * 19 17 16 21 21 C 1.38235 * 119.18769 * 179.75125 * 20 19 17 22 22 C 1.39788 * 118.38449 * 0.51012 * 21 20 19 23 23 C 1.48272 * 120.43623 * 179.70702 * 22 21 20 24 24 C 1.40948 * 126.24649 * 359.71339 * 23 22 21 25 25 N 1.30629 * 108.06998 * 179.81724 * 24 23 22 26 26 N 1.40000 * 108.56579 * 0.44061 * 25 24 23 27 27 H 0.97003 * 125.87290 * 179.71461 * 26 25 24 28 28 C 1.34711 * 108.25949 * 359.71590 * 26 25 24 29 29 C 1.39742 * 119.12391 * 359.72933 * 22 21 20 30 30 N 1.31298 * 120.73052 * 0.02562 * 29 22 21 31 31 C 1.53785 * 113.61053 * 272.49703 * 11 10 9 32 32 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 35 35 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 36 36 H 1.08996 * 113.61569 * 254.53055 * 13 11 10 37 37 H 1.09004 * 113.60977 * 25.34912 * 13 11 10 38 38 H 0.96999 * 119.99828 * 334.99989 * 16 14 13 39 39 H 1.07998 * 120.40947 * 359.97192 * 20 19 17 40 40 H 1.07997 * 120.80552 * 180.21698 * 21 20 19 41 41 H 1.08002 * 125.96469 * 359.97438 * 24 23 22 42 42 H 1.08000 * 126.20252 * 180.02562 * 28 26 25 43 43 H 1.08002 * 119.63504 * 179.97438 * 29 22 21 44 44 H 1.08995 * 113.61917 * 334.56530 * 31 11 10 45 45 H 1.08995 * 113.61487 * 105.47453 * 31 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 1 0.2377 -4.6702 -0.6956 13 6 1.7300 -6.2001 -0.1230 14 6 0.7040 -6.7001 0.9077 15 1 1.1222 -7.3896 1.6411 16 7 -0.5384 -7.1924 0.3077 17 6 -1.2950 -8.0920 0.9672 18 8 -0.9468 -8.4943 2.0600 19 6 -2.5494 -8.5896 0.3610 20 6 -3.3231 -9.5248 1.0485 21 6 -4.4963 -9.9803 0.4766 22 6 -4.8565 -9.4893 -0.7817 23 6 -6.1020 -9.9517 -1.4400 24 6 -7.0204 -10.8871 -0.9224 25 7 -7.9866 -11.0291 -1.7899 26 7 -7.7218 -10.2056 -2.8908 27 1 -8.2756 -10.1196 -3.6825 28 6 -6.5657 -9.5533 -2.6615 29 6 -4.0270 -8.5573 -1.4110 30 7 -2.9223 -8.1446 -0.8337 31 6 0.6160 -5.2483 1.4074 32 1 -0.4850 0.8401 0.0004 33 1 0.3554 -2.3881 0.0005 34 1 2.6845 -3.7147 -0.8894 35 1 2.6845 -3.7147 0.8905 36 1 1.6165 -6.6538 -1.1075 37 1 2.7587 -6.2218 0.2370 38 1 -0.8165 -6.8711 -0.5642 39 1 -3.0113 -9.8860 2.0174 40 1 -5.1170 -10.7015 0.9874 41 1 -6.9407 -11.3957 0.0271 42 1 -6.0917 -8.8435 -3.3232 43 1 -4.2971 -8.1728 -2.3835 44 1 1.3395 -5.0103 2.1870 45 1 -0.3970 -4.9336 1.6582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277001057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = 80.255662 kcal Electronic energy + Delta-G solvation = -27333.311797 eV Core-core repulsion = 23352.172350 eV Total energy + Delta-G solvation = -3981.139447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29348 -41.58702 -40.55555 -39.19209 -36.33020 -34.82034 -34.04401 -32.99662 -32.73694 -32.34504 -29.96563 -28.46077 -26.61612 -25.92314 -25.00132 -24.87477 -23.00039 -22.58359 -22.25147 -21.24987 -20.28300 -19.22272 -19.09907 -19.00145 -17.52408 -16.84928 -16.54118 -16.32273 -16.25856 -16.14190 -15.71058 -15.66411 -15.58233 -15.27767 -15.07531 -14.74521 -14.65445 -14.27762 -14.22868 -13.82174 -13.64967 -13.36094 -13.10344 -13.02369 -12.88660 -12.65995 -12.22002 -11.90839 -11.89143 -11.76174 -11.38489 -11.35619 -11.32785 -11.13185 -10.83901 -10.73412 -10.59853 -10.51966 -10.05327 -8.97454 -8.95958 -7.93107 -5.21494 -0.53233 0.30636 0.93287 1.46229 1.47499 1.51126 1.57111 1.96639 2.03989 2.08307 2.57620 2.98463 3.13722 3.39386 3.54050 3.59910 3.62608 3.76362 3.86031 3.93862 3.95522 3.98493 4.08108 4.25498 4.29234 4.35140 4.56537 4.57603 4.74300 4.79163 4.83364 4.86527 4.90230 4.93991 5.00139 5.07982 5.17448 5.24074 5.29415 5.37949 5.47744 5.50413 5.62739 5.68342 6.29318 6.33503 6.41426 6.61218 6.82331 7.14082 7.34987 8.13416 8.35933 9.30408 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.001864 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.665010 B =15016.317484 C =16489.954766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.076 0.924 9 N -0.745 5.745 10 C 0.160 3.840 11 C -0.111 4.111 12 H 0.081 0.919 13 C -0.115 4.115 14 C 0.122 3.878 15 H 0.100 0.900 16 N -0.685 5.685 17 C 0.570 3.430 18 O -0.571 6.571 19 C 0.035 3.965 20 C -0.103 4.103 21 C -0.086 4.086 22 C -0.006 4.006 23 C -0.232 4.232 24 C 0.069 3.931 25 N -0.329 5.329 26 N -0.463 5.463 27 H 0.456 0.544 28 C 0.106 3.894 29 C 0.089 3.911 30 N -0.464 5.464 31 C -0.141 4.141 32 H 0.251 0.749 33 H 0.372 0.628 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.416 0.584 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.206 0.794 42 H 0.221 0.779 43 H 0.191 0.809 44 H 0.090 0.910 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.918 -26.993 -6.664 31.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.388 5.388 10 C 0.034 3.966 11 C -0.130 4.130 12 H 0.100 0.900 13 C -0.153 4.153 14 C 0.017 3.983 15 H 0.118 0.882 16 N -0.334 5.334 17 C 0.356 3.644 18 O -0.451 6.451 19 C -0.101 4.101 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.009 4.009 23 C -0.244 4.244 24 C -0.118 4.118 25 N -0.150 5.150 26 N -0.170 5.170 27 H 0.303 0.697 28 C -0.045 4.045 29 C -0.073 4.073 30 N -0.175 5.175 31 C -0.180 4.180 32 H 0.059 0.941 33 H 0.204 0.796 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.254 0.746 39 H 0.166 0.834 40 H 0.188 0.812 41 H 0.223 0.777 42 H 0.237 0.763 43 H 0.207 0.793 44 H 0.108 0.892 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.046 -27.164 -6.562 31.277 hybrid contribution -0.194 1.322 0.055 1.337 sum -14.240 -25.843 -6.506 30.215 Atomic orbital electron populations 1.69822 1.06640 1.26071 1.59628 1.25606 0.96451 1.01220 1.03870 0.85181 0.77160 0.79024 0.78218 1.20241 1.22184 1.20452 1.19649 0.91549 0.85529 1.41079 0.90628 1.42582 1.05569 1.01293 1.89310 1.20832 0.93710 0.84446 0.97607 1.22667 0.98500 0.94450 0.97369 0.90039 1.23227 0.99018 0.93361 0.99742 1.21867 0.84877 0.94612 0.96967 0.88170 1.45513 1.22785 1.42421 1.22727 1.18223 0.83268 0.78674 0.84196 1.90747 1.72650 1.60229 1.21447 1.20874 0.96488 0.99404 0.93348 1.22106 0.94236 0.94930 1.01079 1.21819 0.95516 0.99516 0.94341 1.19376 0.92942 0.94769 0.93842 1.18797 0.99273 1.08211 0.98109 1.24440 0.90747 0.96721 0.99873 1.77252 1.24445 1.16295 0.97052 1.46355 1.19514 1.33168 1.17993 0.69655 1.23336 0.87655 0.96432 0.97108 1.23263 0.88963 0.94345 1.00724 1.67412 1.17186 1.23935 1.08925 1.23420 1.01269 0.95824 0.97496 0.94073 0.79630 0.95958 0.95957 0.89272 0.87061 0.74623 0.83434 0.81185 0.77717 0.76254 0.79271 0.89168 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.25 -14.09 9.99 84.04 0.84 -13.25 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -38.91 5.60 -343.44 -1.92 -40.83 16 10 C 0.16 6.43 6.10 86.38 0.53 6.95 16 11 C -0.11 -3.53 3.63 -10.27 -0.04 -3.56 16 12 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 13 C -0.12 -2.71 7.39 31.12 0.23 -2.48 16 14 C 0.12 3.22 4.32 45.52 0.20 3.42 16 15 H 0.10 2.71 7.46 -2.39 -0.02 2.69 16 16 N -0.68 -17.90 5.25 -442.80 -2.33 -20.23 16 17 C 0.57 16.23 7.80 86.81 0.68 16.91 16 18 O -0.57 -19.33 15.91 -3.85 -0.06 -19.39 16 19 C 0.04 0.83 6.75 41.87 0.28 1.12 16 20 C -0.10 -1.95 9.61 22.57 0.22 -1.74 16 21 C -0.09 -1.13 9.69 22.64 0.22 -0.91 16 22 C -0.01 -0.07 5.90 -19.87 -0.12 -0.19 16 23 C -0.23 -2.31 6.05 -20.33 -0.12 -2.43 16 24 C 0.07 0.74 11.45 85.54 0.98 1.72 16 25 N -0.33 -4.33 12.66 -56.41 -0.71 -5.04 16 26 N -0.46 -3.20 7.32 -56.96 -0.42 -3.62 16 27 H 0.46 0.37 8.96 -213.38 -1.91 -1.54 16 28 C 0.11 0.58 11.40 83.87 0.96 1.54 16 29 C 0.09 1.27 10.73 85.14 0.91 2.18 16 30 N -0.46 -9.70 9.51 -184.12 -1.75 -11.45 16 31 C -0.14 -4.44 7.43 31.12 0.23 -4.21 16 32 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.37 20.78 7.67 -92.71 -0.71 20.07 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.02 0.90 7.85 -2.38 -0.02 0.88 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.11 2.32 8.10 -2.39 -0.02 2.30 16 38 H 0.42 10.04 8.02 -92.71 -0.74 9.29 16 39 H 0.15 2.75 7.63 -2.91 -0.02 2.73 16 40 H 0.17 1.11 7.16 -2.91 -0.02 1.09 16 41 H 0.21 1.10 7.41 -2.91 -0.02 1.07 16 42 H 0.22 -0.54 7.30 -2.91 -0.02 -0.56 16 43 H 0.19 1.31 7.03 -2.91 -0.02 1.29 16 44 H 0.09 2.83 7.90 -2.39 -0.02 2.81 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -80.53 385.13 -0.73 -81.26 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -2.30 Total: 29.91 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 6.46 Total: 0.88 kcal Atomic # 7 Polarization: -134.72 SS G_CDS: -6.85 Total: -141.57 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.06 Total: -19.39 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -80.53 -0.73 -81.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277001057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.514 kcal (2) G-P(sol) polarization free energy of solvation -80.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds