Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00129 * 2 1 4 4 H 1.48499 * 109.46919 * 270.00241 * 3 2 1 5 5 H 1.48503 * 109.46998 * 30.00298 * 3 2 1 6 6 H 1.48496 * 109.46942 * 150.00094 * 3 2 1 7 7 C 1.37881 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99792 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99714 * 179.97438 * 7 2 1 10 10 C 1.53501 * 114.20347 * 180.02562 * 9 7 2 11 11 N 1.47061 * 87.98542 * 139.65748 * 10 9 7 12 12 C 1.34775 * 136.05711 * 152.84475 * 11 10 9 13 13 O 1.21567 * 120.00298 * 359.97438 * 12 11 10 14 14 C 1.47716 * 119.99879 * 179.97438 * 12 11 10 15 15 N 1.31925 * 126.56377 * 359.97438 * 14 12 11 16 16 N 1.28555 * 110.04565 * 180.02562 * 15 14 12 17 17 H 0.97007 * 124.87368 * 179.97438 * 16 15 14 18 18 C 1.34942 * 110.24193 * 0.02562 * 16 15 14 19 19 C 1.35378 * 107.07541 * 359.97438 * 18 16 15 20 20 C 1.50755 * 108.97315 * 180.02562 * 19 18 16 21 21 N 1.48186 * 105.54426 * 17.14626 * 20 19 18 22 22 C 1.46899 * 111.00192 * 214.12145 * 21 20 19 23 23 C 1.50703 * 109.47107 * 184.27879 * 22 21 20 24 24 C 1.34847 * 125.89186 * 94.99906 * 23 22 21 25 25 C 1.40890 * 107.41995 * 179.97438 * 24 23 22 26 26 C 1.34853 * 107.41384 * 0.02562 * 25 24 23 27 27 N 1.36339 * 108.21909 * 359.73437 * 26 25 24 28 28 H 0.97003 * 125.63877 * 180.26259 * 27 26 25 29 29 C 1.48157 * 103.39525 * 333.19862 * 21 20 19 30 30 C 1.47063 * 87.88473 * 333.09935 * 11 10 9 31 31 H 0.97002 * 119.99718 * 359.97438 * 1 2 3 32 32 H 1.08997 * 113.41419 * 46.80313 * 9 7 2 33 33 H 1.08992 * 113.46626 * 24.87137 * 10 9 7 34 34 H 1.09007 * 113.46350 * 254.43363 * 10 9 7 35 35 H 1.09001 * 110.22704 * 258.13178 * 20 19 18 36 36 H 1.08995 * 110.23507 * 136.16575 * 20 19 18 37 37 H 1.09002 * 109.47043 * 304.27859 * 22 21 20 38 38 H 1.09001 * 109.47354 * 64.27920 * 22 21 20 39 39 H 1.08005 * 126.29232 * 359.97438 * 24 23 22 40 40 H 1.07999 * 126.29500 * 180.02562 * 25 24 23 41 41 H 1.07998 * 125.88993 * 180.02562 * 26 25 24 42 42 H 1.09001 * 110.22024 * 145.88058 * 29 21 20 43 43 H 1.08998 * 110.22081 * 267.72211 * 29 21 20 44 44 H 1.08995 * 113.47054 * 141.68306 * 30 11 10 45 45 H 1.09009 * 113.47009 * 272.12269 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.1408 -2.5941 -0.0023 11 7 5.1410 -2.0871 -0.9538 12 6 6.4144 -2.3888 -1.2759 13 8 6.9893 -3.2922 -0.7004 14 6 7.1116 -1.6217 -2.3283 15 7 6.6151 -0.6224 -3.0319 16 7 7.4958 -0.1866 -3.8608 17 1 7.3579 0.5445 -4.4833 18 6 8.6393 -0.8931 -3.7412 19 6 8.4357 -1.8182 -2.7740 20 6 9.6918 -2.6343 -2.6041 21 7 10.7683 -1.8449 -3.2475 22 6 11.7635 -2.7249 -3.8746 23 6 12.8932 -1.8933 -4.4254 24 6 14.0536 -1.6197 -3.7954 25 6 14.8235 -0.8163 -4.6596 26 6 14.1040 -0.6292 -5.7846 27 7 12.9206 -1.2925 -5.6490 28 1 12.2138 -1.3290 -6.3125 29 6 10.0470 -1.0479 -4.2670 30 6 4.1422 -1.1017 -1.3946 31 1 -0.4850 0.8401 0.0004 32 1 3.9449 -0.5096 0.7280 33 1 3.4913 -3.3616 -0.4231 34 1 4.5639 -2.8806 0.9606 35 1 9.5843 -3.5992 -3.0997 36 1 9.9093 -2.7756 -1.5455 37 1 12.1532 -3.4204 -3.1313 38 1 11.2952 -3.2837 -4.6848 39 1 14.3402 -1.9548 -2.8094 40 1 15.8089 -0.4228 -4.4581 41 1 14.4139 -0.0569 -6.6465 42 1 10.5156 -0.0705 -4.3820 43 1 10.0383 -1.5754 -5.2208 44 1 4.5664 -0.1218 -1.6133 45 1 3.4930 -1.4677 -2.1901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277030245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = 167.012878 kcal Electronic energy + Delta-G solvation = -28508.414525 eV Core-core repulsion = 24531.037154 eV Total energy + Delta-G solvation = -3977.377371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.08089 -41.42855 -39.46227 -38.51772 -37.14882 -32.69140 -32.64250 -32.04194 -31.24653 -29.60639 -29.27133 -28.10410 -25.94726 -25.60608 -25.03164 -23.15889 -22.38882 -20.94226 -20.68205 -20.29885 -19.93674 -18.28151 -17.97887 -17.72545 -17.17752 -16.49852 -16.34488 -15.51511 -15.25602 -15.10488 -14.95010 -14.68322 -13.99605 -13.93763 -13.85859 -13.54321 -13.40265 -13.24156 -12.96651 -12.78870 -12.54601 -12.44633 -12.05847 -11.98531 -11.97528 -11.75148 -11.69724 -11.11429 -10.89613 -10.64426 -9.97426 -9.89064 -9.54928 -9.44820 -9.43138 -9.18949 -9.14898 -8.65219 -8.58799 -8.35821 -8.01745 -6.18850 -4.21305 1.57176 1.85844 1.90520 2.39182 2.71128 2.94884 3.23414 3.30455 3.34687 3.36032 3.60605 3.70215 3.94306 4.26019 4.33183 4.47578 4.62027 4.64169 4.77367 4.88015 5.01364 5.03365 5.08003 5.17085 5.25541 5.32100 5.44546 5.57780 5.78447 5.81794 5.91679 5.99718 6.04149 6.07117 6.17455 6.21881 6.30715 6.41363 6.45114 6.50351 6.57874 6.69207 6.82152 6.84884 7.21596 7.22731 7.57542 7.71785 8.28501 8.38723 8.62533 8.84314 9.42155 10.93004 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025045 B = 0.002184 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.737981 B =12818.837294 C =13485.629602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.081 0.919 9 C -0.016 4.016 10 C 0.117 3.883 11 N -0.630 5.630 12 C 0.616 3.384 13 O -0.549 6.549 14 C 0.035 3.965 15 N -0.235 5.235 16 N -0.357 5.357 17 H 0.444 0.556 18 C -0.034 4.034 19 C -0.167 4.167 20 C 0.112 3.888 21 N -0.490 5.490 22 C 0.112 3.888 23 C 0.018 3.982 24 C -0.173 4.173 25 C -0.202 4.202 26 C -0.013 4.013 27 N -0.559 5.559 28 H 0.409 0.591 29 C 0.126 3.874 30 C 0.095 3.905 31 H 0.266 0.734 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.162 0.838 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.907 -0.770 -14.599 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.546 4.546 8 H 0.099 0.901 9 C -0.036 4.036 10 C -0.005 4.005 11 N -0.363 5.363 12 C 0.403 3.597 13 O -0.426 6.426 14 C -0.126 4.126 15 N -0.070 5.070 16 N -0.070 5.070 17 H 0.289 0.711 18 C -0.162 4.162 19 C -0.178 4.178 20 C -0.016 4.016 21 N -0.214 5.214 22 C -0.016 4.016 23 C -0.094 4.094 24 C -0.199 4.199 25 C -0.227 4.227 26 C -0.144 4.144 27 N -0.155 5.155 28 H 0.245 0.755 29 C -0.004 4.004 30 C -0.028 4.028 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.066 0.934 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.179 0.821 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 25.462 -0.275 -14.154 29.133 hybrid contribution 0.203 0.623 -1.429 1.572 sum 25.665 0.348 -15.583 30.027 Atomic orbital electron populations 1.69894 1.06298 1.27244 1.49556 1.24988 0.94662 0.99088 0.93844 0.86883 0.80546 0.83671 0.78872 1.19977 1.21258 1.18668 1.20750 0.87387 0.94884 1.51588 0.90126 1.20911 0.97019 0.92996 0.92629 1.23168 0.86206 0.99576 0.91511 1.49745 1.09581 1.36879 1.40056 1.16351 0.80297 0.82144 0.80899 1.90742 1.66397 1.31628 1.53846 1.21326 0.92738 0.97802 1.00750 1.74075 1.16549 1.12598 1.03781 1.42563 1.06937 1.27828 1.29629 0.71148 1.21950 0.92986 0.98074 1.03195 1.20769 0.95269 1.01375 1.00372 1.20926 0.84977 0.93627 1.02045 1.65687 1.10792 1.21196 1.23702 1.20840 0.90030 0.92572 0.98136 1.20009 0.98147 1.04263 0.87031 1.20728 0.94433 1.04249 1.00469 1.20934 1.01080 1.05582 0.95090 1.21814 0.87499 1.03575 1.01524 1.41996 1.16674 1.41688 1.15104 0.75503 1.21041 0.85420 1.00371 0.93543 1.23786 0.86486 0.90973 1.01569 0.92404 0.91557 0.89911 0.91712 0.91636 0.87923 0.87343 0.93354 0.84613 0.84802 0.82078 0.89048 0.92209 0.92033 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 20.47 27.42 -169.99 -4.66 15.81 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -5.97 6.21 56.52 0.35 -5.61 16 7 C -0.51 -13.32 9.38 -34.44 -0.32 -13.65 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C -0.02 -0.36 2.99 -91.39 -0.27 -0.63 16 10 C 0.12 2.39 8.19 -8.52 -0.07 2.32 16 11 N -0.63 -12.98 3.69 -186.60 -0.69 -13.66 16 12 C 0.62 12.56 8.08 -12.39 -0.10 12.46 16 13 O -0.55 -12.11 17.70 5.31 0.09 -12.02 16 14 C 0.03 0.61 7.10 -82.88 -0.59 0.02 16 15 N -0.23 -3.77 10.79 33.36 0.36 -3.41 16 16 N -0.36 -4.18 6.83 33.58 0.23 -3.95 16 17 H 0.44 3.38 8.96 -190.38 -1.71 1.67 16 18 C -0.03 -0.39 8.26 -82.07 -0.68 -1.07 16 19 C -0.17 -2.43 6.96 -104.54 -0.73 -3.16 16 20 C 0.11 1.31 6.62 -4.24 -0.03 1.29 16 21 N -0.49 -4.68 5.51 -236.48 -1.30 -5.98 16 22 C 0.11 0.82 5.16 -4.98 -0.03 0.79 16 23 C 0.02 0.14 6.19 -81.79 -0.51 -0.37 16 24 C -0.17 -1.52 10.76 -39.78 -0.43 -1.95 16 25 C -0.20 -1.61 10.86 -39.78 -0.43 -2.04 16 26 C -0.01 -0.08 11.94 -16.75 -0.20 -0.28 16 27 N -0.56 -3.42 5.99 -9.12 -0.05 -3.47 16 28 H 0.41 1.50 8.96 -40.82 -0.37 1.14 16 29 C 0.13 1.06 6.03 -4.11 -0.02 1.03 16 30 C 0.09 1.96 6.89 -8.66 -0.06 1.90 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.07 1.53 6.50 -51.93 -0.34 1.19 16 33 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 34 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 35 H 0.07 0.69 7.80 -51.93 -0.41 0.28 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.29 7.83 -51.93 -0.41 -0.11 16 39 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.37 7.60 -51.93 -0.39 -0.02 16 44 H 0.06 1.26 7.51 -51.93 -0.39 0.87 16 45 H 0.08 1.74 8.10 -51.92 -0.42 1.32 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -33.82 377.63 -11.53 -45.36 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.41 Total: 2.11 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -4.56 Total: -1.32 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.68 Total: -55.63 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.66 Total: 15.81 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.82 -11.53 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277030245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.370 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds