Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99900 * 2 1 4 4 H 1.48494 * 109.46765 * 269.99924 * 3 2 1 5 5 H 1.48506 * 109.46879 * 29.99647 * 3 2 1 6 6 H 1.48497 * 109.47062 * 149.99882 * 3 2 1 7 7 C 1.38806 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99815 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00221 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00175 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47309 * 179.97438 * 10 9 7 12 12 H 1.08993 * 112.85185 * 316.19958 * 11 10 9 13 13 C 1.53785 * 113.68825 * 87.46659 * 11 10 9 14 14 C 1.53771 * 87.08405 * 139.99425 * 13 11 10 15 15 H 1.08999 * 113.69476 * 220.00796 * 14 13 11 16 16 N 1.46502 * 113.61841 * 89.11420 * 14 13 11 17 17 C 1.34773 * 120.00004 * 107.50195 * 16 14 13 18 18 O 1.21621 * 120.00069 * 0.02562 * 17 16 14 19 19 C 1.47288 * 120.00229 * 180.02562 * 17 16 14 20 20 C 1.37970 * 126.80657 * 0.19707 * 19 17 16 21 21 N 1.34156 * 107.88600 * 180.26191 * 20 19 17 22 22 H 0.96999 * 125.16143 * 179.70208 * 21 20 19 23 23 N 1.39778 * 109.67605 * 359.72005 * 21 20 19 24 24 C 1.31365 * 109.07460 * 359.97438 * 23 21 20 25 25 C 1.48294 * 126.50926 * 179.97438 * 24 23 21 26 26 C 1.39811 * 120.54011 * 325.00741 * 25 24 23 27 27 C 1.38407 * 118.30506 * 180.02562 * 26 25 24 28 28 C 1.38315 * 119.29105 * 359.97438 * 27 26 25 29 29 N 1.31896 * 121.03756 * 0.02566 * 28 27 26 30 30 C 1.31744 * 121.85432 * 359.97438 * 29 28 27 31 31 C 1.53780 * 87.08087 * 334.56596 * 14 13 11 32 32 H 0.96998 * 120.00002 * 359.97438 * 1 2 3 33 33 H 0.96997 * 119.99901 * 359.97438 * 9 7 2 34 34 H 1.09007 * 109.47047 * 59.99585 * 10 9 7 35 35 H 1.08994 * 109.47480 * 299.99971 * 10 9 7 36 36 H 1.08997 * 113.61437 * 25.44102 * 13 11 10 37 37 H 1.09004 * 113.61419 * 254.54242 * 13 11 10 38 38 H 0.97001 * 120.00101 * 287.50589 * 16 14 13 39 39 H 1.07997 * 126.05439 * 0.02562 * 20 19 17 40 40 H 1.07998 * 120.84508 * 0.03968 * 26 25 24 41 41 H 1.08001 * 120.35176 * 180.02562 * 27 26 25 42 42 H 1.07995 * 119.48267 * 180.02562 * 28 27 26 43 43 H 1.08001 * 119.70363 * 179.97438 * 30 29 28 44 44 H 1.09004 * 113.61890 * 139.98077 * 31 14 13 45 45 H 1.09001 * 113.61913 * 270.79910 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.9001 -1.4011 -0.6941 13 6 6.2125 -2.0171 1.4080 14 6 7.4253 -2.8193 0.9079 15 1 7.8152 -3.5261 1.6404 16 7 8.4713 -1.9883 0.3066 17 6 9.6292 -1.7817 0.9645 18 8 9.8061 -2.2857 2.0572 19 6 10.6807 -0.9458 0.3603 20 6 10.6286 -0.3070 -0.8615 21 7 11.7896 0.3418 -1.0371 22 1 12.0217 0.8706 -1.8164 23 7 12.6143 0.1397 0.0733 24 6 11.9881 -0.6238 0.9398 25 6 12.5083 -1.0798 2.2515 26 6 13.8660 -1.3705 2.4152 27 6 14.3013 -1.7930 3.6592 28 6 13.3881 -1.9125 4.6911 29 7 12.1128 -1.6309 4.5066 30 6 11.6519 -1.2254 3.3409 31 6 6.4786 -3.4586 -0.1216 32 1 -0.4850 0.8400 0.0004 33 1 3.8647 -0.3620 0.0007 34 1 3.8492 -3.0422 -0.8892 35 1 3.8486 -3.0425 0.8908 36 1 5.6452 -2.5242 2.1883 37 1 6.4465 -0.9822 1.6580 38 1 8.3304 -1.5866 -0.5650 39 1 9.8013 -0.3288 -1.5554 40 1 14.5575 -1.2677 1.5920 41 1 15.3432 -2.0261 3.8227 42 1 13.7245 -2.2416 5.6632 43 1 10.6007 -1.0047 3.2286 44 1 6.9275 -3.5876 -1.1066 45 1 5.9852 -4.3607 0.2400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277063252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = 114.429550 kcal Electronic energy + Delta-G solvation = -28246.348727 eV Core-core repulsion = 24266.691172 eV Total energy + Delta-G solvation = -3979.657556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69699 -40.04202 -40.01545 -38.21382 -34.75120 -33.82055 -33.28622 -32.18485 -31.30528 -30.62598 -30.24764 -27.21756 -25.60251 -24.52006 -24.11645 -23.65403 -22.80587 -21.41128 -20.94272 -20.31263 -19.38801 -18.71722 -17.57157 -17.29832 -16.81308 -16.36132 -15.92998 -15.89822 -15.41307 -14.91881 -14.72052 -14.45340 -14.40900 -14.09638 -13.96782 -13.93712 -13.41669 -13.30006 -13.14982 -12.65305 -12.50750 -12.33213 -12.14237 -11.78575 -11.50119 -11.41073 -10.91404 -10.79112 -10.65688 -10.25243 -10.18984 -10.11927 -9.90858 -9.87962 -9.64314 -9.58090 -9.39057 -9.06888 -8.87733 -8.81305 -7.21632 -5.76653 -3.11637 0.53226 1.03527 1.10446 1.89100 2.15332 2.97625 3.13785 3.35775 3.38243 3.44207 3.66845 3.79161 4.08660 4.40169 4.55071 4.58498 4.58969 4.66881 4.67034 4.73204 4.79730 4.89204 5.00734 5.01066 5.01916 5.24904 5.53969 5.59000 5.65506 5.66839 5.70977 5.82495 5.86205 5.89958 5.95157 5.98781 6.11567 6.12727 6.26662 6.48675 6.55503 6.57157 6.68290 6.82206 6.94595 7.37158 7.83997 8.00340 8.10039 8.42734 9.22282 9.94704 10.14806 11.41941 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.002266 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.995089 B =12355.000909 C =12767.966785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.119 4.119 12 H 0.085 0.915 13 C -0.141 4.141 14 C 0.118 3.882 15 H 0.103 0.897 16 N -0.706 5.706 17 C 0.594 3.406 18 O -0.533 6.533 19 C -0.280 4.280 20 C 0.113 3.887 21 N -0.461 5.461 22 H 0.446 0.554 23 N -0.281 5.281 24 C 0.178 3.822 25 C -0.085 4.085 26 C -0.045 4.045 27 C -0.188 4.188 28 C 0.109 3.891 29 N -0.487 5.487 30 C 0.169 3.831 31 C -0.136 4.136 32 H 0.259 0.741 33 H 0.360 0.640 34 H 0.026 0.974 35 H 0.029 0.971 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.191 0.809 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.156 0.844 43 H 0.176 0.824 44 H 0.069 0.931 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.517 -2.956 -1.284 31.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.194 4.194 3 Si 0.716 3.284 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.138 4.138 12 H 0.103 0.897 13 C -0.179 4.179 14 C 0.013 3.987 15 H 0.121 0.879 16 N -0.355 5.355 17 C 0.382 3.618 18 O -0.411 6.411 19 C -0.295 4.295 20 C -0.038 4.038 21 N -0.166 5.166 22 H 0.291 0.709 23 N -0.102 5.102 24 C 0.008 3.992 25 C -0.090 4.090 26 C -0.072 4.072 27 C -0.208 4.208 28 C -0.048 4.048 29 N -0.195 5.195 30 C 0.010 3.990 31 C -0.175 4.175 32 H 0.069 0.931 33 H 0.192 0.808 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.208 0.792 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.173 0.827 43 H 0.192 0.808 44 H 0.088 0.912 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 31.874 -2.854 -0.070 32.001 hybrid contribution 0.338 1.461 -1.725 2.286 sum 32.212 -1.392 -1.795 32.292 Atomic orbital electron populations 1.69703 1.05096 1.25774 1.57752 1.24687 0.95254 0.97213 1.02201 0.86528 0.79279 0.85017 0.77604 1.21230 1.21768 1.20306 1.19080 0.80766 0.94704 1.42713 0.89264 1.42698 1.03962 1.02294 1.91121 1.20621 0.87717 0.89210 0.98541 1.22815 0.96445 0.97286 0.97226 0.89704 1.23453 0.95885 1.00989 0.97614 1.21938 0.86736 0.93382 0.96616 0.87855 1.45503 1.15585 1.52257 1.22202 1.17113 0.80615 0.79566 0.84555 1.90767 1.79759 1.50559 1.20013 1.21302 0.97974 1.12519 0.97749 1.23098 0.90856 0.92576 0.97234 1.45960 1.11678 1.41109 1.17842 0.70910 1.77366 1.16510 1.20890 0.95429 1.21574 0.90754 0.93841 0.92985 1.18693 0.94319 1.04821 0.91125 1.21602 0.94170 0.93771 0.97659 1.22016 1.01508 1.03486 0.93827 1.22960 0.88858 0.93887 0.99050 1.67874 1.15701 1.11717 1.24236 1.23463 1.00445 0.89194 0.85862 1.23302 0.96641 0.98571 0.98957 0.93096 0.80768 0.95570 0.95329 0.88785 0.91416 0.76915 0.79205 0.84753 0.84600 0.82708 0.80753 0.91233 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.43 13.97 55.49 0.78 -28.66 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 3 Si 0.89 21.98 27.74 -169.99 -4.71 17.26 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.24 -6.86 10.47 -15.06 -0.16 -7.02 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.76 -17.60 5.41 -59.91 -0.32 -17.93 16 10 C 0.17 3.04 6.10 -4.04 -0.02 3.02 16 11 C -0.12 -1.60 3.63 -89.81 -0.33 -1.92 16 12 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 13 C -0.14 -1.85 7.43 -25.92 -0.19 -2.04 16 14 C 0.12 1.30 4.32 -67.12 -0.29 1.01 16 15 H 0.10 1.25 7.46 -51.93 -0.39 0.86 16 16 N -0.71 -6.70 5.25 -54.14 -0.28 -6.98 16 17 C 0.59 6.75 7.68 -12.58 -0.10 6.66 16 18 O -0.53 -7.72 12.08 5.26 0.06 -7.66 16 19 C -0.28 -2.72 6.27 -102.95 -0.65 -3.37 16 20 C 0.11 0.67 11.50 -16.63 -0.19 0.48 16 21 N -0.46 -2.77 7.20 30.81 0.22 -2.55 16 22 H 0.45 1.07 8.96 -182.84 -1.64 -0.57 16 23 N -0.28 -2.73 12.64 34.57 0.44 -2.30 16 24 C 0.18 1.95 6.96 -80.56 -0.56 1.38 16 25 C -0.09 -0.99 5.74 -104.76 -0.60 -1.59 16 26 C -0.04 -0.43 9.92 -38.93 -0.39 -0.81 16 27 C -0.19 -1.54 10.10 -39.49 -0.40 -1.94 16 28 C 0.11 1.05 11.17 -17.50 -0.20 0.85 16 29 N -0.49 -6.26 10.35 -12.96 -0.13 -6.39 16 30 C 0.17 2.19 8.96 -17.18 -0.15 2.04 16 31 C -0.14 -1.41 7.39 -25.92 -0.19 -1.61 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.36 8.16 5.53 -40.82 -0.23 7.93 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 36 H 0.09 1.29 7.90 -51.93 -0.41 0.88 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 2.70 7.65 -40.82 -0.31 2.39 16 39 H 0.19 0.34 7.48 -52.49 -0.39 -0.06 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.18 2.44 5.70 -52.49 -0.30 2.15 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -37.29 378.27 -9.81 -47.10 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.05 Total: 7.28 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -4.51 Total: -4.89 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: 0.69 Total: -64.80 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.06 Total: -7.66 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.29 -9.81 -47.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277063252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.531 kcal (2) G-P(sol) polarization free energy of solvation -37.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds