Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99468 * 2 1 4 4 H 1.48501 * 109.47093 * 269.99801 * 3 2 1 5 5 H 1.48492 * 109.47412 * 30.00239 * 3 2 1 6 6 H 1.48511 * 109.46813 * 150.00111 * 3 2 1 7 7 C 1.38803 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00533 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99801 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99904 * 173.80441 * 9 7 2 11 11 C 1.53004 * 112.85196 * 294.78610 * 10 9 7 12 12 N 1.46494 * 109.47037 * 292.02808 * 11 10 9 13 13 C 1.34782 * 120.00107 * 175.90924 * 12 11 10 14 14 O 1.21517 * 119.99523 * 0.02562 * 13 12 11 15 15 C 1.48151 * 120.00089 * 179.97438 * 13 12 11 16 16 C 1.39943 * 120.89706 * 0.02562 * 15 13 12 17 17 C 1.38057 * 119.14080 * 180.02562 * 16 15 13 18 18 N 1.31840 * 120.97989 * 0.02562 * 17 16 15 19 19 C 1.32239 * 121.97366 * 359.97438 * 18 17 16 20 20 N 1.39830 * 119.62200 * 179.97438 * 19 18 17 21 21 C 1.35846 * 126.10628 * 359.71153 * 20 19 18 22 22 C 1.35277 * 107.61299 * 179.83948 * 21 20 19 23 23 C 1.39958 * 107.96944 * 0.42696 * 22 21 20 24 24 N 1.30815 * 108.36675 * 359.73462 * 23 22 21 25 25 C 1.38909 * 120.74830 * 359.71777 * 19 18 17 26 26 C 1.53782 * 113.69220 * 66.05658 * 10 9 7 27 27 C 1.53782 * 87.08184 * 89.12664 * 26 10 9 28 28 C 1.53782 * 87.08081 * 25.43284 * 27 26 10 29 29 H 0.96999 * 120.00221 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00475 * 353.81188 * 9 7 2 31 31 H 1.08994 * 109.47031 * 172.02773 * 11 10 9 32 32 H 1.08997 * 109.46954 * 52.02452 * 11 10 9 33 33 H 0.96997 * 120.00184 * 355.90938 * 12 11 10 34 34 H 1.08004 * 120.43078 * 359.97438 * 16 15 13 35 35 H 1.08002 * 119.50735 * 180.02562 * 17 16 15 36 36 H 1.08000 * 126.18798 * 0.02562 * 21 20 19 37 37 H 1.08002 * 126.01789 * 180.12512 * 22 21 20 38 38 H 1.08001 * 125.81053 * 179.73250 * 23 22 21 39 39 H 1.08002 * 120.53037 * 180.28845 * 25 19 18 40 40 H 1.08993 * 113.61574 * 203.67424 * 26 10 9 41 41 H 1.09003 * 113.61314 * 334.57938 * 26 10 9 42 42 H 1.08997 * 113.61164 * 270.88668 * 27 26 10 43 43 H 1.08996 * 113.61645 * 139.98368 * 27 26 10 44 44 H 1.09000 * 113.61619 * 220.01967 * 28 27 26 45 45 H 1.08997 * 113.61344 * 89.12018 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4632 0.1375 11 6 3.8980 -3.1295 1.4980 12 7 4.5248 -2.3173 2.5437 13 6 4.3931 -2.6672 3.8386 14 8 3.7548 -3.6567 4.1386 15 6 5.0274 -1.8460 4.8961 16 6 5.7670 -0.7031 4.5717 17 6 6.3430 0.0352 5.5861 18 7 6.2057 -0.3220 6.8477 19 6 5.5161 -1.3937 7.2009 20 7 5.4025 -1.7275 8.5541 21 6 5.9497 -1.0474 9.5950 22 6 5.6031 -1.6922 10.7326 23 6 4.8299 -2.8042 10.3802 24 7 4.7092 -2.8264 9.0778 25 6 4.8990 -2.1886 6.2434 26 6 3.9259 -3.4190 -1.0527 27 6 5.1365 -2.7247 -1.6987 28 6 5.5907 -2.3649 -0.2742 29 1 -0.4850 0.8400 0.0004 30 1 3.8647 -0.3669 -0.0913 31 1 4.3474 -4.1225 1.4910 32 1 2.8297 -3.2155 1.6962 33 1 5.0346 -1.5276 2.3042 34 1 5.8863 -0.4030 3.5411 35 1 6.9147 0.9185 5.3425 36 1 6.5499 -0.1521 9.5268 37 1 5.8791 -1.4028 11.7359 38 1 4.4052 -3.5217 11.0666 39 1 4.3329 -3.0605 6.5361 40 1 4.1038 -4.4653 -0.8045 41 1 2.9931 -3.2642 -1.5951 42 1 4.8710 -1.8583 -2.3043 43 1 5.8107 -3.4105 -2.2118 44 1 6.0020 -1.3591 -0.1880 45 1 6.2237 -3.1230 0.1868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280505142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 133.832637 kcal Electronic energy + Delta-G solvation = -28768.569648 eV Core-core repulsion = 24789.753473 eV Total energy + Delta-G solvation = -3978.816175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81776 -40.55195 -39.45452 -38.46588 -34.41858 -33.78695 -33.36328 -32.84053 -30.72575 -30.59093 -29.65552 -27.80213 -25.46267 -24.96700 -24.25603 -23.52231 -22.19477 -21.58023 -21.04124 -20.25748 -18.95017 -18.24849 -17.72989 -17.38193 -16.55711 -15.94580 -15.84360 -15.50555 -15.36144 -15.05021 -14.78992 -14.46433 -14.32267 -14.28585 -13.87292 -13.76695 -13.53949 -13.12073 -13.05188 -12.77536 -12.45485 -12.30239 -11.97920 -11.55108 -11.27363 -11.10410 -11.01549 -10.75397 -10.54163 -10.40589 -10.33688 -10.23160 -10.15105 -9.81954 -9.73649 -9.59542 -9.47482 -8.99277 -8.74697 -8.58019 -7.41924 -5.86166 -3.24767 0.25973 0.58609 1.73604 1.82312 2.49385 2.90948 3.17247 3.24646 3.28409 3.36711 3.63751 3.98306 4.20210 4.41689 4.47989 4.61682 4.63480 4.75907 4.83467 4.89722 4.99485 5.08849 5.16910 5.21955 5.33373 5.34035 5.41391 5.51542 5.60549 5.63481 5.76119 5.86260 5.93493 6.03164 6.05316 6.12631 6.13865 6.23811 6.41007 6.55283 6.69661 6.74745 6.76918 6.86618 7.07024 7.55362 7.65267 7.89794 8.29787 8.32643 9.08503 9.79886 9.97508 11.31565 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.002778 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.248741 B =10077.039212 C =10765.361724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.724 5.724 10 C 0.178 3.822 11 C 0.118 3.882 12 N -0.695 5.695 13 C 0.552 3.448 14 O -0.529 6.529 15 C -0.054 4.054 16 C -0.154 4.154 17 C 0.132 3.868 18 N -0.496 5.496 19 C 0.364 3.636 20 N -0.326 5.326 21 C 0.079 3.921 22 C -0.267 4.267 23 C 0.063 3.937 24 N -0.279 5.279 25 C -0.108 4.108 26 C -0.147 4.147 27 C -0.130 4.130 28 C -0.148 4.148 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.398 0.602 34 H 0.148 0.852 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.156 0.844 38 H 0.194 0.806 39 H 0.161 0.839 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.586 -1.817 13.325 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.366 5.366 10 C 0.085 3.915 11 C -0.007 4.007 12 N -0.345 5.345 13 C 0.336 3.664 14 O -0.406 6.406 15 C -0.065 4.065 16 C -0.176 4.176 17 C -0.025 4.025 18 N -0.210 5.210 19 C 0.137 3.863 20 N -0.104 5.104 21 C -0.063 4.063 22 C -0.295 4.295 23 C -0.126 4.126 24 N -0.098 5.098 25 C -0.131 4.131 26 C -0.187 4.187 27 C -0.167 4.167 28 C -0.186 4.186 29 H 0.071 0.929 30 H 0.196 0.804 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.233 0.767 34 H 0.166 0.834 35 H 0.192 0.808 36 H 0.200 0.800 37 H 0.174 0.826 38 H 0.211 0.789 39 H 0.179 0.821 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.739 -2.665 13.081 21.411 hybrid contribution 0.646 1.781 0.007 1.895 sum 17.385 -0.883 13.088 21.779 Atomic orbital electron populations 1.69692 1.05121 1.25900 1.56743 1.24681 0.95162 0.97107 1.01716 0.86612 0.79160 0.85305 0.77707 1.21109 1.21795 1.20378 1.18921 0.80112 0.94736 1.43547 0.88993 1.42398 1.03966 1.01726 1.88528 1.20760 0.90945 0.88706 0.91056 1.21974 0.99261 0.92571 0.86924 1.45666 1.53463 1.30084 1.05253 1.17959 0.80964 0.84803 0.82636 1.90792 1.40726 1.26836 1.82251 1.20406 0.96857 0.95408 0.93869 1.22413 0.98063 0.95057 1.02030 1.22468 0.96222 0.98580 0.85279 1.66700 1.17303 1.14725 1.22268 1.17513 0.95344 0.91889 0.81570 1.45780 1.40280 1.21125 1.03178 1.22923 0.98247 0.98732 0.86369 1.21671 1.08769 0.99759 0.99318 1.24202 0.97585 0.98329 0.92500 1.77578 1.16862 1.04209 1.11134 1.21700 0.99438 1.01252 0.90711 1.23274 0.99373 0.97641 0.98390 1.22651 0.97767 1.00608 0.95684 1.23217 0.96318 1.01307 0.97787 0.92944 0.80369 0.92136 0.90107 0.76746 0.83431 0.80841 0.80020 0.82593 0.78935 0.82098 0.90917 0.90151 0.90111 0.92391 0.91863 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.97 55.49 0.78 -27.49 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 20.77 27.68 -169.99 -4.70 16.07 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -5.91 6.62 56.52 0.37 -5.54 16 7 C -0.24 -6.33 9.53 -15.06 -0.14 -6.47 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.72 -15.00 4.98 -46.48 -0.23 -15.23 16 10 C 0.18 2.96 0.82 -131.00 -0.11 2.85 16 11 C 0.12 2.02 5.08 -4.04 -0.02 1.99 16 12 N -0.70 -10.76 5.40 -61.16 -0.33 -11.09 16 13 C 0.55 9.23 7.80 -12.19 -0.10 9.14 16 14 O -0.53 -10.72 16.44 5.35 0.09 -10.63 16 15 C -0.05 -0.76 5.91 -104.68 -0.62 -1.38 16 16 C -0.15 -1.67 9.61 -39.01 -0.37 -2.05 16 17 C 0.13 1.30 11.17 -17.61 -0.20 1.10 16 18 N -0.50 -5.94 9.83 -12.34 -0.12 -6.07 16 19 C 0.36 4.97 7.55 -154.43 -1.17 3.80 16 20 N -0.33 -4.27 3.81 -12.12 -0.05 -4.32 16 21 C 0.08 0.81 11.10 -16.83 -0.19 0.62 16 22 C -0.27 -2.29 10.80 -39.99 -0.43 -2.73 16 23 C 0.06 0.60 12.02 -17.34 -0.21 0.40 16 24 N -0.28 -3.71 11.83 30.64 0.36 -3.35 16 25 C -0.11 -1.58 9.27 -38.82 -0.36 -1.94 16 26 C -0.15 -2.31 7.28 -25.92 -0.19 -2.49 16 27 C -0.13 -1.77 7.99 -25.92 -0.21 -1.97 16 28 C -0.15 -1.93 6.98 -25.92 -0.18 -2.11 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.36 7.34 5.80 -40.82 -0.24 7.10 16 31 H 0.06 0.95 8.01 -51.93 -0.42 0.53 16 32 H 0.08 1.69 7.80 -51.93 -0.41 1.28 16 33 H 0.40 5.28 6.37 -40.82 -0.26 5.02 16 34 H 0.15 1.26 6.53 -52.48 -0.34 0.91 16 35 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.18 1.45 8.05 -52.49 -0.42 1.02 16 37 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.19 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.16 2.57 7.37 -52.49 -0.39 2.18 16 40 H 0.07 1.01 8.01 -51.93 -0.42 0.59 16 41 H 0.08 1.47 7.87 -51.93 -0.41 1.06 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 45 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -34.28 381.99 -8.87 -43.15 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -5.84 Total: 14.26 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -4.58 Total: -1.06 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: 0.41 Total: -67.54 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.70 Total: 16.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.28 -8.87 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280505142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.984 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds