Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47382 * 269.99915 * 3 2 1 5 5 H 1.48504 * 109.47271 * 30.00168 * 3 2 1 6 6 H 1.48500 * 109.46863 * 149.99779 * 3 2 1 7 7 C 1.38810 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00142 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00179 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00255 * 173.81232 * 9 7 2 11 11 C 1.53002 * 112.85258 * 294.79191 * 10 9 7 12 12 N 1.46503 * 109.46687 * 292.02618 * 11 10 9 13 13 C 1.34775 * 119.99455 * 176.15047 * 12 11 10 14 14 O 1.21604 * 120.00563 * 359.71514 * 13 12 11 15 15 C 1.47425 * 119.99620 * 179.71932 * 13 12 11 16 16 C 1.41361 * 126.40840 * 0.02562 * 15 13 12 17 17 N 1.30450 * 108.07723 * 179.97438 * 16 15 13 18 18 N 1.39944 * 108.91453 * 359.97438 * 17 16 15 19 19 C 1.39914 * 125.77604 * 180.02562 * 18 17 16 20 20 C 1.39328 * 120.85634 * 179.69406 * 19 18 17 21 21 C 1.38005 * 119.07600 * 179.75150 * 20 19 18 22 22 N 1.31932 * 120.83707 * 0.53772 * 21 20 19 23 23 C 1.31939 * 121.88271 * 359.73366 * 22 21 20 24 24 C 1.38006 * 120.83438 * 359.97438 * 23 22 21 25 25 C 1.34603 * 108.44778 * 359.75019 * 18 17 16 26 26 C 1.53784 * 113.61190 * 65.98651 * 10 9 7 27 27 C 1.53952 * 87.01964 * 89.22829 * 26 10 9 28 28 C 1.53778 * 87.11313 * 25.36224 * 27 26 10 29 29 H 0.96998 * 120.00473 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00241 * 353.82354 * 9 7 2 31 31 H 1.08994 * 109.46904 * 172.02295 * 11 10 9 32 32 H 1.09002 * 109.46778 * 52.02029 * 11 10 9 33 33 H 0.97001 * 120.00229 * 355.86206 * 12 11 10 34 34 H 1.07994 * 125.96408 * 359.95935 * 16 15 13 35 35 H 1.07998 * 120.45856 * 0.02562 * 20 19 18 36 36 H 1.08005 * 119.57870 * 180.25194 * 21 20 19 37 37 H 1.08003 * 119.57792 * 180.02562 * 23 22 21 38 38 H 1.08000 * 120.45641 * 180.02562 * 24 23 22 39 39 H 1.08002 * 126.31368 * 180.26575 * 25 18 17 40 40 H 1.08994 * 113.61477 * 203.75134 * 26 10 9 41 41 H 1.08999 * 113.61163 * 334.65361 * 26 10 9 42 42 H 1.09001 * 113.53642 * 270.81247 * 27 26 10 43 43 H 1.09003 * 113.66583 * 139.93409 * 27 26 10 44 44 H 1.08996 * 113.61800 * 220.08908 * 28 27 26 45 45 H 1.09005 * 113.61559 * 89.17939 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4635 0.1351 11 6 3.8979 -3.1313 1.4949 12 7 4.5246 -2.3200 2.5415 13 6 4.3969 -2.6741 3.8356 14 8 3.7571 -3.6640 4.1349 15 6 5.0328 -1.8613 4.8884 16 6 5.8020 -0.6911 4.6952 17 7 6.1888 -0.2632 5.8652 18 7 5.6931 -1.1251 6.8501 19 6 5.8965 -0.9954 8.2283 20 6 5.3476 -1.9134 9.1211 21 6 5.5758 -1.7532 10.4727 22 7 6.2936 -0.7416 10.9221 23 6 6.8253 0.1512 10.1090 24 6 6.6484 0.0583 8.7435 25 6 4.9825 -2.0965 6.2475 26 6 3.9231 -3.4173 -1.0563 27 6 5.1364 -2.7230 -1.7013 28 6 5.5906 -2.3647 -0.2765 29 1 -0.4851 0.8400 -0.0004 30 1 3.8646 -0.3669 -0.0915 31 1 4.3472 -4.1243 1.4868 32 1 2.8294 -3.2174 1.6929 33 1 5.0350 -1.5305 2.3028 34 1 6.0300 -0.2317 3.7448 35 1 4.7555 -2.7414 8.7601 36 1 5.1576 -2.4624 11.1717 37 1 7.4069 0.9645 10.5173 38 1 7.0867 0.7923 8.0836 39 1 4.4698 -2.9114 6.7370 40 1 4.0994 -4.4643 -0.8096 41 1 2.9902 -3.2602 -1.5976 42 1 4.8709 -1.8558 -2.3060 43 1 5.8105 -3.4083 -2.2152 44 1 6.0019 -1.3591 -0.1893 45 1 6.2235 -3.1234 0.1838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280521388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = 124.564953 kcal Electronic energy + Delta-G solvation = -28545.839315 eV Core-core repulsion = 24566.621264 eV Total energy + Delta-G solvation = -3979.218052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07688 -40.34301 -39.44383 -38.31730 -34.79568 -33.96050 -33.31255 -31.96960 -30.77192 -30.70583 -30.36395 -27.53583 -25.39865 -24.79128 -24.28367 -23.61102 -22.48674 -21.61888 -21.22949 -20.02219 -19.01530 -18.26785 -17.67856 -16.99724 -16.52533 -16.27525 -15.93446 -15.60134 -15.44735 -15.07241 -14.63297 -14.59606 -14.31772 -14.27743 -14.22227 -13.99781 -13.50360 -13.19194 -12.93366 -12.71788 -12.35353 -12.29590 -11.91759 -11.49711 -11.39477 -11.29344 -11.21256 -10.96315 -10.48955 -10.29986 -10.18879 -10.10513 -9.76374 -9.74901 -9.66851 -9.66041 -9.53722 -8.94336 -8.87730 -8.51981 -7.36715 -5.82351 -3.20206 0.19989 0.58243 1.61826 1.75970 1.97274 3.29724 3.32197 3.32480 3.40348 3.45882 3.60329 3.93593 3.96127 4.19166 4.43123 4.46469 4.52220 4.63986 4.84626 4.95839 4.98081 5.02774 5.05664 5.13447 5.21555 5.27422 5.28320 5.39492 5.50206 5.54933 5.65778 5.93176 5.99459 6.01364 6.07998 6.08796 6.18295 6.20597 6.50443 6.53345 6.62547 6.79620 6.83145 6.94843 7.10683 7.45439 7.87361 7.94425 8.36165 8.54492 9.13074 9.84633 10.02583 11.35527 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.002613 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.086152 B =10712.602748 C =11557.241625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.092 0.908 9 N -0.724 5.724 10 C 0.178 3.822 11 C 0.121 3.879 12 N -0.701 5.701 13 C 0.589 3.411 14 O -0.552 6.552 15 C -0.263 4.263 16 C 0.099 3.901 17 N -0.288 5.288 18 N -0.322 5.322 19 C 0.207 3.793 20 C -0.196 4.196 21 C 0.129 3.871 22 N -0.494 5.494 23 C 0.124 3.876 24 C -0.173 4.173 25 C 0.124 3.876 26 C -0.147 4.147 27 C -0.130 4.130 28 C -0.148 4.148 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.396 0.604 34 H 0.199 0.801 35 H 0.146 0.854 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.194 0.806 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.682 -3.403 14.202 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.110 0.890 9 N -0.366 5.366 10 C 0.086 3.914 11 C -0.004 4.004 12 N -0.349 5.349 13 C 0.375 3.625 14 O -0.431 6.431 15 C -0.276 4.276 16 C -0.090 4.090 17 N -0.105 5.105 18 N -0.096 5.096 19 C 0.106 3.894 20 C -0.219 4.219 21 C -0.028 4.028 22 N -0.203 5.203 23 C -0.033 4.033 24 C -0.195 4.195 25 C -0.021 4.021 26 C -0.187 4.187 27 C -0.168 4.168 28 C -0.185 4.185 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.229 0.771 34 H 0.216 0.784 35 H 0.164 0.836 36 H 0.185 0.815 37 H 0.183 0.817 38 H 0.169 0.831 39 H 0.211 0.789 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.742 -3.164 15.982 23.362 hybrid contribution 0.019 1.058 -1.655 1.964 sum 16.761 -2.106 14.328 22.151 Atomic orbital electron populations 1.69689 1.05124 1.25837 1.56995 1.24668 0.95148 0.97078 1.01821 0.86614 0.79239 0.85305 0.77660 1.21177 1.21875 1.20304 1.18923 0.80162 0.94693 1.43251 0.89013 1.42396 1.03931 1.01753 1.88540 1.20758 0.90862 0.88613 0.91172 1.21881 0.99109 0.92503 0.86941 1.45522 1.53995 1.30072 1.05309 1.17060 0.79742 0.83806 0.81936 1.90765 1.42222 1.27617 1.82545 1.20545 1.11584 1.01984 0.93536 1.24359 0.94110 0.93527 0.97049 1.77256 1.22337 1.14878 0.96032 1.45569 1.39085 1.20575 1.04342 1.17831 0.96422 0.95997 0.79136 1.21974 1.04286 1.01190 0.94450 1.22693 0.93086 0.94589 0.92462 1.67724 1.09319 1.03263 1.40041 1.22769 0.95216 0.96553 0.88723 1.21975 1.01070 0.98895 0.97566 1.23047 0.93398 0.92953 0.92694 1.23305 0.99270 0.97650 0.98499 1.22685 0.97765 1.00577 0.95741 1.23202 0.96394 1.01294 0.97660 0.93010 0.80388 0.92449 0.90375 0.77050 0.78402 0.83639 0.81517 0.81664 0.83137 0.78914 0.90971 0.90213 0.90174 0.92464 0.91883 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.07 27.68 -169.99 -4.70 16.36 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.04 6.61 56.52 0.37 -5.66 16 7 C -0.24 -6.29 9.52 -15.06 -0.14 -6.44 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.72 -15.19 4.98 -46.48 -0.23 -15.42 16 10 C 0.18 3.01 0.82 -131.00 -0.11 2.90 16 11 C 0.12 2.09 5.08 -4.04 -0.02 2.07 16 12 N -0.70 -10.94 5.43 -61.38 -0.33 -11.27 16 13 C 0.59 9.67 7.81 -12.52 -0.10 9.57 16 14 O -0.55 -10.82 16.90 5.27 0.09 -10.73 16 15 C -0.26 -3.58 6.13 -105.05 -0.64 -4.23 16 16 C 0.10 1.20 11.50 -16.95 -0.19 1.00 16 17 N -0.29 -3.65 11.87 30.88 0.37 -3.29 16 18 N -0.32 -3.80 3.76 -10.03 -0.04 -3.84 16 19 C 0.21 2.09 6.73 -83.36 -0.56 1.53 16 20 C -0.20 -1.56 9.52 -39.26 -0.37 -1.93 16 21 C 0.13 0.96 11.17 -17.59 -0.20 0.76 16 22 N -0.49 -4.42 10.36 -13.32 -0.14 -4.55 16 23 C 0.12 0.97 11.17 -17.59 -0.20 0.78 16 24 C -0.17 -1.56 9.73 -39.26 -0.38 -1.94 16 25 C 0.12 1.49 10.64 -16.42 -0.17 1.32 16 26 C -0.15 -2.34 7.29 -25.83 -0.19 -2.53 16 27 C -0.13 -1.81 8.00 -25.83 -0.21 -2.02 16 28 C -0.15 -1.97 6.98 -25.92 -0.18 -2.15 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.36 7.47 5.80 -40.82 -0.24 7.24 16 31 H 0.06 0.91 8.01 -51.93 -0.42 0.49 16 32 H 0.08 1.64 7.80 -51.93 -0.41 1.24 16 33 H 0.40 5.40 7.18 -40.82 -0.29 5.10 16 34 H 0.20 1.82 7.50 -52.49 -0.39 1.43 16 35 H 0.15 0.86 6.85 -52.49 -0.36 0.50 16 36 H 0.17 0.74 8.06 -52.48 -0.42 0.31 16 37 H 0.17 0.82 8.06 -52.48 -0.42 0.39 16 38 H 0.15 1.30 7.78 -52.49 -0.41 0.89 16 39 H 0.19 1.84 7.09 -52.49 -0.37 1.47 16 40 H 0.07 1.01 8.01 -51.93 -0.42 0.59 16 41 H 0.08 1.48 7.86 -51.93 -0.41 1.07 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 45 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -34.51 382.22 -8.04 -42.55 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -5.83 Total: 13.25 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.76 Total: -1.15 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: 0.40 Total: -66.04 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.70 Total: 16.36 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.51 -8.04 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280521388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.117 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds