Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99901 * 2 1 4 4 H 1.48494 * 109.46910 * 269.99797 * 3 2 1 5 5 H 1.48500 * 109.47035 * 30.00013 * 3 2 1 6 6 H 1.48504 * 109.46683 * 149.99625 * 3 2 1 7 7 C 1.38811 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00434 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00587 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47687 * 180.02562 * 10 9 7 12 12 C 1.53782 * 113.61754 * 175.00148 * 11 10 9 13 13 C 1.53785 * 87.07904 * 139.98443 * 12 11 10 14 14 N 1.46491 * 113.61650 * 89.12088 * 13 12 11 15 15 C 1.34780 * 120.00476 * 156.52699 * 14 13 12 16 16 O 1.21514 * 119.99542 * 359.97438 * 15 14 13 17 17 C 1.48155 * 120.00556 * 179.97438 * 15 14 13 18 18 C 1.39948 * 120.89023 * 359.97438 * 17 15 14 19 19 C 1.38043 * 119.13685 * 180.02562 * 18 17 15 20 20 N 1.31858 * 120.97841 * 359.97438 * 19 18 17 21 21 C 1.32224 * 121.97185 * 359.97438 * 20 19 18 22 22 N 1.39851 * 119.61773 * 179.97438 * 21 20 19 23 23 C 1.37163 * 126.49033 * 4.71432 * 22 21 20 24 24 C 1.34621 * 106.82845 * 179.84010 * 23 22 21 25 25 N 1.34157 * 108.21665 * 0.42689 * 24 23 22 26 26 C 1.30479 * 109.36923 * 359.72581 * 25 24 23 27 27 C 1.38904 * 120.75405 * 0.02562 * 21 20 19 28 28 C 1.53774 * 87.17409 * 334.52381 * 13 12 11 29 29 H 0.97000 * 119.99909 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99349 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46568 * 59.99920 * 10 9 7 32 32 H 1.09007 * 109.47169 * 300.00475 * 10 9 7 33 33 H 1.09007 * 112.84778 * 43.80168 * 11 10 9 34 34 H 1.08994 * 113.61234 * 25.43511 * 12 11 10 35 35 H 1.08998 * 113.61220 * 254.52750 * 12 11 10 36 36 H 1.09002 * 113.60618 * 219.93344 * 13 12 11 37 37 H 0.96999 * 120.00296 * 336.52390 * 14 13 12 38 38 H 1.08007 * 120.43182 * 359.97438 * 18 17 15 39 39 H 1.07994 * 119.50790 * 179.97438 * 19 18 17 40 40 H 1.08000 * 126.59003 * 359.96782 * 23 22 21 41 41 H 1.08000 * 125.89101 * 180.13337 * 24 23 22 42 42 H 1.07999 * 125.72351 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.53089 * 179.97438 * 27 21 20 44 44 H 1.09002 * 113.61363 * 140.02640 * 28 13 12 45 45 H 1.08998 * 113.62009 * 270.92822 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 6 1.7306 -6.2000 -0.1229 13 6 0.7045 -6.7000 0.9077 14 7 -0.5385 -7.1907 0.3077 15 6 -1.3114 -8.0668 0.9798 16 8 -0.9768 -8.4499 2.0834 17 6 -2.5689 -8.5626 0.3733 18 6 -2.9723 -8.1334 -0.8962 19 6 -4.1509 -8.6184 -1.4265 20 7 -4.8951 -9.4755 -0.7556 21 6 -4.5529 -9.9092 0.4458 22 7 -5.3796 -10.8182 1.1138 23 6 -6.5128 -11.4088 0.6155 24 6 -6.9927 -12.2107 1.5844 25 7 -6.1849 -12.1098 2.6507 26 6 -5.2151 -11.2792 2.3819 27 6 -3.3825 -9.4713 1.0523 28 6 0.6156 -5.2492 1.4097 29 1 -0.4850 0.8401 -0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.6847 -3.7144 0.8905 32 1 2.6849 -3.7145 -0.8895 33 1 0.2381 -4.6701 -0.6957 34 1 2.7587 -6.2221 0.2384 35 1 1.6171 -6.6537 -1.1075 36 1 1.1225 -7.3907 1.6401 37 1 -0.8055 -6.8852 -0.5734 38 1 -2.3698 -7.4312 -1.4533 39 1 -4.4682 -8.2909 -2.4055 40 1 -6.9374 -11.2607 -0.3665 41 1 -7.8782 -12.8254 1.5169 42 1 -4.4161 -11.0038 3.0543 43 1 -3.1068 -9.8276 2.0338 44 1 -0.3976 -4.9358 1.6617 45 1 1.3393 -5.0117 2.1893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282074024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = 112.263843 kcal Electronic energy + Delta-G solvation = -27600.691241 eV Core-core repulsion = 23620.939773 eV Total energy + Delta-G solvation = -3979.751468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.79577 -41.10422 -39.99072 -38.41803 -34.95943 -34.59630 -33.66035 -32.94441 -30.96582 -30.57716 -29.73025 -27.12603 -25.64579 -25.45655 -24.71083 -23.43465 -22.41317 -21.60262 -21.34739 -20.91813 -19.43463 -19.23614 -17.70413 -17.13286 -16.82401 -16.45697 -16.25019 -15.98657 -15.37294 -15.33074 -14.89987 -14.55431 -14.40808 -14.32159 -14.29314 -14.09396 -13.94233 -13.74381 -13.40624 -12.87610 -12.66778 -12.47701 -12.24382 -11.78859 -11.29330 -11.10254 -10.87924 -10.81804 -10.58892 -10.57476 -10.53744 -10.44843 -10.22605 -10.16793 -9.92385 -9.68462 -9.35140 -9.25601 -8.94098 -8.89547 -6.95115 -5.80371 -3.08757 -0.06577 0.17718 1.64655 1.88667 2.45435 2.61692 2.70289 3.22482 3.40613 3.45936 3.47627 3.65508 3.92907 4.00644 4.17559 4.24129 4.32646 4.50948 4.52590 4.69485 4.70038 4.85999 4.93817 4.97940 5.01165 5.07593 5.21291 5.30600 5.53523 5.55522 5.61506 5.72375 5.73516 5.82354 5.87094 5.99490 6.09124 6.17325 6.23635 6.32138 6.47865 6.61025 6.70684 6.84443 7.08638 7.10881 7.53585 7.66431 7.74495 8.38834 9.49981 10.08408 10.42556 11.42519 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.001788 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.843342 B =15658.824525 C =16189.500364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.114 4.114 12 C -0.137 4.137 13 C 0.114 3.886 14 N -0.696 5.696 15 C 0.560 3.440 16 O -0.523 6.523 17 C -0.054 4.054 18 C -0.151 4.151 19 C 0.136 3.864 20 N -0.484 5.484 21 C 0.344 3.656 22 N -0.412 5.412 23 C -0.026 4.026 24 C -0.030 4.030 25 N -0.477 5.477 26 C 0.196 3.804 27 C -0.124 4.124 28 C -0.138 4.138 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.403 0.597 38 H 0.151 0.849 39 H 0.177 0.823 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.214 0.786 43 H 0.157 0.843 44 H 0.069 0.931 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 -23.958 -3.151 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.132 4.132 12 C -0.175 4.175 13 C 0.009 3.991 14 N -0.347 5.347 15 C 0.345 3.655 16 O -0.399 6.399 17 C -0.066 4.066 18 C -0.172 4.172 19 C -0.021 4.021 20 N -0.197 5.197 21 C 0.116 3.884 22 N -0.094 5.094 23 C -0.155 4.155 24 C -0.174 4.174 25 N -0.194 5.194 26 C -0.085 4.085 27 C -0.147 4.147 28 C -0.176 4.176 29 H 0.065 0.935 30 H 0.216 0.784 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.239 0.761 38 H 0.169 0.831 39 H 0.194 0.806 40 H 0.200 0.800 41 H 0.194 0.806 42 H 0.230 0.770 43 H 0.175 0.825 44 H 0.088 0.912 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.255 -24.804 -1.998 26.549 hybrid contribution 0.772 2.000 -0.965 2.351 sum -8.483 -22.804 -2.963 24.510 Atomic orbital electron populations 1.69656 1.05117 1.25641 1.57863 1.24742 0.95533 0.97713 1.03055 0.86190 0.78673 0.83828 0.77509 1.21730 1.21768 1.20757 1.19242 0.91046 0.84251 1.42586 0.91212 1.42336 1.05804 0.99984 1.89450 1.20635 0.92984 0.85186 0.97764 1.22827 0.99130 0.94299 0.96986 1.23316 0.98928 0.96530 0.98740 1.22049 0.83844 0.96345 0.96865 1.45565 1.23296 1.44630 1.21168 1.17963 0.83011 0.79277 0.85230 1.90809 1.72088 1.57841 1.19195 1.20240 0.95346 0.96430 0.94556 1.22458 0.98564 1.00969 0.95207 1.22628 0.89706 0.90670 0.99128 1.66883 1.33777 1.12637 1.06371 1.18023 0.88884 0.91352 0.90150 1.43142 1.20516 1.32548 1.13234 1.22947 0.89967 1.00344 1.02287 1.22443 1.01919 1.03143 0.89908 1.70364 1.04206 1.17070 1.27713 1.25472 1.01534 0.97243 0.84293 1.21626 0.92770 0.98033 1.02264 1.23469 1.02695 0.93635 0.97850 0.93538 0.78366 0.96149 0.96361 0.89412 0.88399 0.91130 0.87955 0.76140 0.83120 0.80571 0.79980 0.80556 0.76968 0.82546 0.91190 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.90 5.60 -59.92 -0.34 -18.24 16 10 C 0.16 3.03 6.10 -4.05 -0.02 3.00 16 11 C -0.11 -1.57 3.65 -89.67 -0.33 -1.90 16 12 C -0.14 -1.41 7.38 -25.92 -0.19 -1.60 16 13 C 0.11 1.23 4.29 -67.12 -0.29 0.94 16 14 N -0.70 -6.48 5.22 -53.87 -0.28 -6.76 16 15 C 0.56 5.98 7.80 -12.19 -0.10 5.88 16 16 O -0.52 -7.34 16.06 5.35 0.09 -7.25 16 17 C -0.05 -0.46 5.91 -104.68 -0.62 -1.08 16 18 C -0.15 -0.92 9.61 -39.01 -0.37 -1.29 16 19 C 0.14 0.84 11.17 -17.61 -0.20 0.64 16 20 N -0.48 -4.18 9.87 -12.34 -0.12 -4.30 16 21 C 0.34 3.15 7.50 -154.42 -1.16 1.99 16 22 N -0.41 -3.85 2.98 -63.85 -0.19 -4.04 16 23 C -0.03 -0.23 11.17 -16.45 -0.18 -0.41 16 24 C -0.03 -0.27 11.85 -17.82 -0.21 -0.48 16 25 N -0.48 -5.18 11.24 -14.46 -0.16 -5.34 16 26 C 0.20 1.80 11.89 -89.58 -1.07 0.74 16 27 C -0.12 -1.08 9.07 -38.83 -0.35 -1.44 16 28 C -0.14 -1.84 7.45 -25.78 -0.19 -2.04 16 29 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.38 9.84 7.67 -40.82 -0.31 9.53 16 31 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.17 7.50 -51.93 -0.39 0.78 16 37 H 0.40 2.78 6.84 -40.82 -0.28 2.50 16 38 H 0.15 0.52 6.53 -52.48 -0.34 0.18 16 39 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.21 1.31 7.07 -52.49 -0.37 0.94 16 43 H 0.16 1.25 6.46 -52.49 -0.34 0.91 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 1.29 7.90 -51.93 -0.41 0.88 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -35.52 384.03 -10.82 -46.34 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.78 Total: 8.13 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -5.52 Total: -4.31 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -0.37 Total: -65.81 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.09 Total: -7.25 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.52 -10.82 -46.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282074024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.603 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds