Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99901 * 2 1 4 4 H 1.48494 * 109.46910 * 269.99797 * 3 2 1 5 5 H 1.48500 * 109.47035 * 30.00013 * 3 2 1 6 6 H 1.48504 * 109.46683 * 149.99625 * 3 2 1 7 7 C 1.38811 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00434 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00587 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47687 * 180.02562 * 10 9 7 12 12 C 1.53782 * 113.61754 * 175.00148 * 11 10 9 13 13 C 1.53785 * 87.07904 * 139.98443 * 12 11 10 14 14 N 1.46491 * 113.61650 * 89.12088 * 13 12 11 15 15 C 1.34780 * 120.00476 * 156.52699 * 14 13 12 16 16 O 1.21514 * 119.99542 * 359.97438 * 15 14 13 17 17 C 1.48155 * 120.00556 * 179.97438 * 15 14 13 18 18 C 1.39948 * 120.89023 * 359.97438 * 17 15 14 19 19 C 1.38043 * 119.13685 * 180.02562 * 18 17 15 20 20 N 1.31858 * 120.97841 * 359.97438 * 19 18 17 21 21 C 1.32224 * 121.97185 * 359.97438 * 20 19 18 22 22 N 1.39851 * 119.61773 * 179.97438 * 21 20 19 23 23 C 1.37163 * 126.49033 * 4.71432 * 22 21 20 24 24 C 1.34621 * 106.82845 * 179.84010 * 23 22 21 25 25 N 1.34157 * 108.21665 * 0.42689 * 24 23 22 26 26 C 1.30479 * 109.36923 * 359.72581 * 25 24 23 27 27 C 1.38904 * 120.75405 * 0.02562 * 21 20 19 28 28 C 1.53774 * 87.17409 * 334.52381 * 13 12 11 29 29 H 0.97000 * 119.99909 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99349 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46568 * 59.99920 * 10 9 7 32 32 H 1.09007 * 109.47169 * 300.00475 * 10 9 7 33 33 H 1.09007 * 112.84778 * 43.80168 * 11 10 9 34 34 H 1.08994 * 113.61234 * 25.43511 * 12 11 10 35 35 H 1.08998 * 113.61220 * 254.52750 * 12 11 10 36 36 H 1.09002 * 113.60618 * 219.93344 * 13 12 11 37 37 H 0.96999 * 120.00296 * 336.52390 * 14 13 12 38 38 H 1.08007 * 120.43182 * 359.97438 * 18 17 15 39 39 H 1.07994 * 119.50790 * 179.97438 * 19 18 17 40 40 H 1.08000 * 126.59003 * 359.96782 * 23 22 21 41 41 H 1.08000 * 125.89101 * 180.13337 * 24 23 22 42 42 H 1.07999 * 125.72351 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.53089 * 179.97438 * 27 21 20 44 44 H 1.09002 * 113.61363 * 140.02640 * 28 13 12 45 45 H 1.08998 * 113.62009 * 270.92822 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 6 1.7306 -6.2000 -0.1229 13 6 0.7045 -6.7000 0.9077 14 7 -0.5385 -7.1907 0.3077 15 6 -1.3114 -8.0668 0.9798 16 8 -0.9768 -8.4499 2.0834 17 6 -2.5689 -8.5626 0.3733 18 6 -2.9723 -8.1334 -0.8962 19 6 -4.1509 -8.6184 -1.4265 20 7 -4.8951 -9.4755 -0.7556 21 6 -4.5529 -9.9092 0.4458 22 7 -5.3796 -10.8182 1.1138 23 6 -6.5128 -11.4088 0.6155 24 6 -6.9927 -12.2107 1.5844 25 7 -6.1849 -12.1098 2.6507 26 6 -5.2151 -11.2792 2.3819 27 6 -3.3825 -9.4713 1.0523 28 6 0.6156 -5.2492 1.4097 29 1 -0.4850 0.8401 -0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.6847 -3.7144 0.8905 32 1 2.6849 -3.7145 -0.8895 33 1 0.2381 -4.6701 -0.6957 34 1 2.7587 -6.2221 0.2384 35 1 1.6171 -6.6537 -1.1075 36 1 1.1225 -7.3907 1.6401 37 1 -0.8055 -6.8852 -0.5734 38 1 -2.3698 -7.4312 -1.4533 39 1 -4.4682 -8.2909 -2.4055 40 1 -6.9374 -11.2607 -0.3665 41 1 -7.8782 -12.8254 1.5169 42 1 -4.4161 -11.0038 3.0543 43 1 -3.1068 -9.8276 2.0338 44 1 -0.3976 -4.9358 1.6617 45 1 1.3393 -5.0117 2.1893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282074024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 90.331271 kcal Electronic energy + Delta-G solvation = -27601.642309 eV Core-core repulsion = 23620.939773 eV Total energy + Delta-G solvation = -3980.702535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.44520 -41.83387 -40.79371 -39.39139 -36.36430 -35.55051 -34.61763 -33.80866 -32.72125 -31.26815 -30.35349 -28.60641 -26.62602 -26.36414 -25.36957 -24.98539 -23.26395 -22.83034 -22.04748 -21.62706 -20.39377 -20.05697 -19.06441 -18.36353 -17.51999 -17.14460 -16.91552 -16.85026 -16.60240 -16.21404 -16.09259 -15.64082 -15.54353 -15.11333 -15.00049 -14.97659 -14.91295 -14.80940 -14.43889 -14.40951 -13.70726 -13.39680 -13.21493 -13.09998 -12.90428 -12.70527 -12.18337 -11.94805 -11.92516 -11.79556 -11.50848 -11.35701 -11.28644 -11.23022 -11.15864 -10.90798 -10.83935 -10.15457 -9.96614 -9.57404 -8.96148 -7.94759 -5.22258 -0.68318 -0.41503 1.02392 1.27001 1.47765 1.48888 1.57291 1.69241 1.85411 2.01532 2.56550 2.61135 3.10756 3.27144 3.38597 3.42059 3.56840 3.59065 3.60618 3.73343 3.75967 3.93705 3.95661 4.12386 4.29201 4.35147 4.43680 4.49940 4.56540 4.60911 4.75214 4.78635 4.86654 4.87875 4.93311 5.00932 5.01176 5.15987 5.22217 5.26885 5.34298 5.49976 5.61769 5.64822 5.97746 6.28497 6.33713 6.53336 6.87119 6.97366 7.34823 8.13572 8.35147 9.28654 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.001788 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.843342 B =15658.824525 C =16189.500364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.158 3.842 11 C -0.112 4.112 12 C -0.115 4.115 13 C 0.125 3.875 14 N -0.685 5.685 15 C 0.561 3.439 16 O -0.563 6.563 17 C -0.067 4.067 18 C -0.134 4.134 19 C 0.138 3.862 20 N -0.497 5.497 21 C 0.328 3.672 22 N -0.416 5.416 23 C -0.031 4.031 24 C -0.041 4.041 25 N -0.510 5.510 26 C 0.189 3.811 27 C -0.131 4.131 28 C -0.144 4.144 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.018 0.982 32 H 0.023 0.977 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.417 0.583 38 H 0.182 0.818 39 H 0.213 0.787 40 H 0.199 0.801 41 H 0.198 0.802 42 H 0.232 0.768 43 H 0.155 0.845 44 H 0.052 0.948 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 -24.307 -5.039 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.130 4.130 12 C -0.153 4.153 13 C 0.020 3.980 14 N -0.337 5.337 15 C 0.348 3.652 16 O -0.442 6.442 17 C -0.079 4.079 18 C -0.155 4.155 19 C -0.020 4.020 20 N -0.209 5.209 21 C 0.101 3.899 22 N -0.099 5.099 23 C -0.161 4.161 24 C -0.185 4.185 25 N -0.227 5.227 26 C -0.093 4.093 27 C -0.154 4.154 28 C -0.183 4.183 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.255 0.745 38 H 0.199 0.801 39 H 0.230 0.770 40 H 0.216 0.784 41 H 0.215 0.785 42 H 0.248 0.752 43 H 0.173 0.827 44 H 0.071 0.929 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.500 -25.180 -3.915 26.863 hybrid contribution 0.580 2.104 -0.410 2.221 sum -7.919 -23.076 -4.325 24.777 Atomic orbital electron populations 1.69804 1.06524 1.25963 1.59694 1.25537 0.96399 1.01021 1.03910 0.85174 0.77693 0.79644 0.77469 1.21280 1.22381 1.19574 1.19658 0.91516 0.85596 1.40910 0.90766 1.42567 1.05602 1.01234 1.89285 1.20847 0.93879 0.84603 0.97503 1.22768 0.98617 0.94267 0.97369 1.23228 0.98854 0.93258 0.99949 1.21839 0.84587 0.94531 0.97021 1.45456 1.22640 1.44006 1.21570 1.18255 0.83427 0.78844 0.84702 1.90791 1.73123 1.59313 1.20992 1.20124 0.94690 0.97285 0.95766 1.22800 0.98497 1.00221 0.93955 1.23290 0.89176 0.89444 1.00044 1.66934 1.34520 1.13270 1.06218 1.18080 0.89137 0.91993 0.90672 1.43240 1.20714 1.32607 1.13302 1.23267 0.89818 1.00093 1.02884 1.22867 1.02486 1.03594 0.89586 1.70353 1.05262 1.18217 1.28891 1.25878 1.01719 0.96935 0.84728 1.21651 0.92940 0.98359 1.02433 1.23480 1.01426 0.95854 0.97548 0.94095 0.79491 0.96361 0.95945 0.89113 0.87505 0.88442 0.88319 0.74473 0.80054 0.77024 0.78445 0.78546 0.75158 0.82740 0.92922 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 2 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -36.28 5.60 -343.48 -1.92 -38.21 16 10 C 0.16 5.73 6.10 86.38 0.53 6.25 16 11 C -0.11 -2.89 3.65 -10.18 -0.04 -2.93 16 12 C -0.11 -2.00 7.38 31.12 0.23 -1.77 16 13 C 0.13 2.48 4.29 45.52 0.20 2.68 16 14 N -0.69 -11.26 5.22 -442.63 -2.31 -13.57 16 15 C 0.56 11.34 7.80 86.88 0.68 12.01 16 16 O -0.56 -15.77 16.06 -3.76 -0.06 -15.83 16 17 C -0.07 -1.05 5.91 -19.90 -0.12 -1.17 16 18 C -0.13 -1.23 9.61 22.64 0.22 -1.01 16 19 C 0.14 1.28 11.17 84.64 0.95 2.23 16 20 N -0.50 -7.70 9.87 -192.95 -1.90 -9.61 16 21 C 0.33 5.79 7.50 132.77 1.00 6.79 16 22 N -0.42 -7.74 2.98 -355.91 -1.06 -8.80 16 23 C -0.03 -0.53 11.17 83.03 0.93 0.39 16 24 C -0.04 -0.74 11.85 83.51 0.99 0.25 16 25 N -0.51 -11.27 11.24 -199.67 -2.24 -13.52 16 26 C 0.19 3.55 11.89 179.98 2.14 5.69 16 27 C -0.13 -2.24 9.07 22.76 0.21 -2.04 16 28 C -0.14 -3.76 7.45 31.21 0.23 -3.53 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.37 19.34 7.67 -92.70 -0.71 18.63 16 31 H 0.02 0.68 7.85 -2.39 -0.02 0.66 16 32 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.11 1.75 8.10 -2.39 -0.02 1.73 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 2.12 7.50 -2.39 -0.02 2.11 16 37 H 0.42 4.36 6.84 -92.71 -0.63 3.73 16 38 H 0.18 0.45 6.53 -2.91 -0.02 0.43 16 39 H 0.21 0.34 8.06 -2.91 -0.02 0.32 16 40 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.23 3.00 7.07 -2.91 -0.02 2.98 16 43 H 0.15 2.57 6.46 -2.91 -0.02 2.55 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 2.35 7.90 -2.39 -0.02 2.33 16 Total: -1.00 -77.76 384.03 1.94 -75.82 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.30 Total: 26.86 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 9.44 Total: 7.41 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -9.16 Total: -141.74 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.06 Total: -15.83 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -77.76 1.94 -75.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282074024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.150 kcal (2) G-P(sol) polarization free energy of solvation -77.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds