Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86789 * 120.00268 * 2 1 4 4 H 1.48499 * 109.47461 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47309 * 299.99551 * 3 2 1 6 6 H 1.48501 * 109.47425 * 59.99465 * 3 2 1 7 7 C 1.38813 * 119.99510 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.46510 * 120.00034 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47096 * 180.02562 * 10 9 7 12 12 H 1.08993 * 112.84950 * 316.19165 * 11 10 9 13 13 C 1.53784 * 113.61537 * 87.50447 * 11 10 9 14 14 C 1.53784 * 87.07991 * 139.97615 * 13 11 10 15 15 H 1.08997 * 113.68856 * 220.00397 * 14 13 11 16 16 N 1.46499 * 113.60995 * 89.11676 * 14 13 11 17 17 C 1.34779 * 120.00266 * 107.50316 * 16 14 13 18 18 O 1.21585 * 119.99435 * 359.97438 * 17 16 14 19 19 C 1.47591 * 120.00253 * 179.97438 * 17 16 14 20 20 C 1.39967 * 120.59527 * 319.22899 * 19 17 16 21 21 C 1.38351 * 118.34900 * 179.97438 * 20 19 17 22 22 C 1.38394 * 119.45372 * 359.97438 * 21 20 19 23 23 N 1.31845 * 121.18144 * 0.02562 * 22 21 20 24 24 C 1.32264 * 121.80204 * 359.97438 * 23 22 21 25 25 N 1.39357 * 119.79847 * 180.27599 * 24 23 22 26 26 C 1.35938 * 126.10210 * 332.04203 * 25 24 23 27 27 C 1.35239 * 107.59846 * 179.83962 * 26 25 24 28 28 C 1.40008 * 107.97253 * 0.42344 * 27 26 25 29 29 N 1.30788 * 108.37927 * 359.73798 * 28 27 26 30 30 C 1.53775 * 87.08305 * 334.56683 * 14 13 11 31 31 H 0.97005 * 120.00134 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00378 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.46869 * 59.99685 * 10 9 7 34 34 H 1.09004 * 109.46823 * 300.00550 * 10 9 7 35 35 H 1.08997 * 113.61061 * 25.42861 * 13 11 10 36 36 H 1.08997 * 113.61294 * 254.52430 * 13 11 10 37 37 H 0.96997 * 120.00055 * 287.49606 * 16 14 13 38 38 H 1.08002 * 120.82775 * 359.97438 * 20 19 17 39 39 H 1.08000 * 120.27332 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.41237 * 180.02562 * 22 21 20 41 41 H 1.07994 * 126.20181 * 359.97438 * 26 25 24 42 42 H 1.07998 * 126.01598 * 180.16010 * 27 26 25 43 43 H 1.08000 * 125.81477 * 179.76182 * 28 27 26 44 44 H 1.08995 * 113.61435 * 139.98234 * 30 14 13 45 45 H 1.09000 * 113.61620 * 270.88580 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8197 -0.0001 12 1 0.2373 -4.6705 0.6949 13 6 0.6170 -5.2478 -1.4081 14 6 0.7048 -6.6997 -0.9090 15 1 1.1232 -7.3900 -1.6414 16 7 -0.5388 -7.1905 -0.3102 17 6 -1.2956 -8.0897 -0.9701 18 8 -0.9462 -8.4931 -2.0625 19 6 -2.5482 -8.5846 -0.3666 20 6 -2.6115 -8.8833 0.9994 21 6 -3.8093 -9.3437 1.5164 22 6 -4.8997 -9.4937 0.6775 23 7 -4.8177 -9.2062 -0.6066 24 6 -3.6970 -8.7630 -1.1515 25 7 -3.6587 -8.4664 -2.5126 26 6 -4.4265 -9.0368 -3.4785 27 6 -4.0851 -8.4718 -4.6589 28 6 -3.0735 -7.5356 -4.4132 29 7 -2.8179 -7.5317 -3.1305 30 6 1.7300 -6.2002 0.1226 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3880 -0.0002 33 1 2.6845 -3.7146 0.8905 34 1 2.6845 -3.7146 -0.8894 35 1 1.3412 -5.0093 -2.1870 36 1 -0.3957 -4.9330 -1.6595 37 1 -0.8177 -6.8685 0.5612 38 1 -1.7467 -8.7576 1.6341 39 1 -3.8930 -9.5832 2.5662 40 1 -5.8346 -9.8527 1.0819 41 1 -5.1751 -9.8008 -3.3300 42 1 -4.5141 -8.7051 -5.6222 43 1 -2.5872 -6.9210 -5.1562 44 1 1.6157 -6.6543 1.1069 45 1 2.7584 -6.2221 -0.2379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283071182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 139.656014 kcal Electronic energy + Delta-G solvation = -28799.276140 eV Core-core repulsion = 24820.712486 eV Total energy + Delta-G solvation = -3978.563654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81969 -40.48805 -39.73276 -38.06422 -34.54610 -34.03570 -33.43495 -32.55288 -30.80324 -30.47355 -29.71886 -26.88569 -25.45014 -25.14658 -24.41232 -23.31751 -21.74084 -21.29812 -21.23321 -20.76786 -19.05147 -18.67158 -17.84948 -17.12498 -16.95912 -15.91588 -15.82595 -15.54118 -15.02456 -14.79092 -14.75193 -14.48497 -14.18052 -13.86217 -13.81948 -13.61840 -13.53862 -13.27314 -12.92541 -12.87946 -12.71312 -12.34049 -12.07937 -11.60646 -11.02019 -10.86515 -10.82631 -10.72710 -10.47266 -10.42149 -10.31633 -10.21140 -10.04051 -9.85177 -9.77595 -9.57555 -9.33363 -8.90755 -8.80675 -8.57551 -6.87049 -5.73128 -3.01209 0.13503 0.51900 1.85697 1.96799 2.62931 2.75485 2.97965 3.35812 3.45046 3.50483 3.52897 3.90961 4.12346 4.33685 4.38890 4.54712 4.60636 4.71946 4.80373 4.84509 4.87088 4.98293 5.15399 5.21200 5.24565 5.43767 5.49010 5.56184 5.61196 5.77003 5.79940 5.87232 5.90724 5.98094 6.05699 6.14929 6.31915 6.37126 6.42981 6.48360 6.68291 6.82104 6.86101 6.97762 7.11315 7.45351 7.60813 7.73317 8.19590 8.46006 9.56969 10.16662 10.51054 11.49920 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.002455 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.054289 B =11403.376066 C =11886.325027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.114 4.114 12 H 0.086 0.914 13 C -0.136 4.136 14 C 0.121 3.879 15 H 0.099 0.901 16 N -0.702 5.702 17 C 0.573 3.427 18 O -0.507 6.507 19 C -0.176 4.176 20 C -0.026 4.026 21 C -0.188 4.188 22 C 0.149 3.851 23 N -0.505 5.505 24 C 0.419 3.581 25 N -0.331 5.331 26 C 0.069 3.931 27 C -0.257 4.257 28 C 0.059 3.941 29 N -0.239 5.239 30 C -0.138 4.138 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.017 0.983 34 H 0.020 0.980 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.399 0.601 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.155 0.845 43 H 0.191 0.809 44 H 0.067 0.933 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.799 -25.262 0.312 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.133 4.133 12 H 0.104 0.896 13 C -0.175 4.175 14 C 0.016 3.984 15 H 0.117 0.883 16 N -0.353 5.353 17 C 0.357 3.643 18 O -0.381 6.381 19 C -0.184 4.184 20 C -0.052 4.052 21 C -0.209 4.209 22 C -0.009 4.009 23 N -0.218 5.218 24 C 0.190 3.810 25 N -0.110 5.110 26 C -0.071 4.071 27 C -0.285 4.285 28 C -0.131 4.131 29 N -0.056 5.056 30 C -0.177 4.177 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.233 0.767 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.189 0.811 41 H 0.194 0.806 42 H 0.172 0.828 43 H 0.208 0.792 44 H 0.086 0.914 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.421 -25.066 -0.045 26.778 hybrid contribution 0.058 0.936 0.330 0.994 sum -9.363 -24.130 0.286 25.885 Atomic orbital electron populations 1.69675 1.05101 1.25434 1.58049 1.24741 0.95524 0.97678 1.03235 0.86125 0.78772 0.84202 0.77162 1.20582 1.21889 1.21926 1.19289 0.91037 0.84272 1.42243 0.91205 1.42364 1.05860 1.00018 1.89358 1.20635 0.92997 0.85234 0.97607 1.22762 0.99029 0.94184 0.97295 0.89564 1.23379 1.02580 0.94058 0.97445 1.21895 0.83940 0.96091 0.96436 0.88327 1.45508 1.23711 1.43805 1.22263 1.17537 0.82503 0.79415 0.84813 1.90802 1.70778 1.57557 1.18935 1.20588 0.95048 1.07866 0.94930 1.21759 0.98797 0.92267 0.92392 1.22132 0.93552 1.02901 1.02289 1.22770 0.99030 0.92435 0.86664 1.67049 1.24374 1.15428 1.14946 1.17491 0.88631 0.92818 0.82056 1.45600 1.30330 1.31794 1.03247 1.22777 0.96812 0.99619 0.87888 1.21632 1.04433 1.03698 0.98770 1.24176 0.96656 0.98587 0.93722 1.77790 1.11130 1.08119 1.08538 1.23325 0.98910 0.96643 0.98785 0.93635 0.78337 0.96474 0.96229 0.89221 0.91157 0.76709 0.83226 0.83232 0.81112 0.80572 0.82764 0.79232 0.91383 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.93 5.60 -59.90 -0.34 -19.26 16 10 C 0.16 3.29 6.10 -4.04 -0.02 3.26 16 11 C -0.11 -1.80 3.63 -89.81 -0.33 -2.13 16 12 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.14 -2.13 7.43 -25.92 -0.19 -2.32 16 14 C 0.12 1.60 4.32 -67.12 -0.29 1.31 16 15 H 0.10 1.39 7.46 -51.93 -0.39 1.00 16 16 N -0.70 -8.61 5.20 -54.04 -0.28 -8.89 16 17 C 0.57 8.05 6.40 -12.44 -0.08 7.98 16 18 O -0.51 -8.81 13.83 5.29 0.07 -8.73 16 19 C -0.18 -2.11 5.77 -104.67 -0.60 -2.71 16 20 C -0.03 -0.20 9.50 -38.89 -0.37 -0.57 16 21 C -0.19 -1.10 10.09 -39.48 -0.40 -1.50 16 22 C 0.15 1.05 11.17 -17.49 -0.20 0.85 16 23 N -0.51 -5.44 10.02 -12.02 -0.12 -5.56 16 24 C 0.42 5.45 7.37 -154.36 -1.14 4.31 16 25 N -0.33 -4.71 3.44 -11.89 -0.04 -4.75 16 26 C 0.07 0.79 11.22 -16.80 -0.19 0.61 16 27 C -0.26 -2.75 10.80 -39.99 -0.43 -3.18 16 28 C 0.06 0.75 12.02 -17.33 -0.21 0.54 16 29 N -0.24 -3.76 8.80 30.65 0.27 -3.49 16 30 C -0.14 -1.68 7.39 -25.92 -0.19 -1.87 16 31 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.40 7.84 -51.93 -0.41 0.00 16 35 H 0.09 1.42 7.89 -51.93 -0.41 1.01 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.40 4.06 8.25 -40.82 -0.34 3.72 16 38 H 0.15 0.78 7.97 -52.49 -0.42 0.36 16 39 H 0.15 0.38 8.06 -52.49 -0.42 -0.05 16 40 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -37.54 383.73 -9.88 -47.43 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.04 Total: 10.72 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -4.89 Total: -2.92 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: 0.22 Total: -70.03 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.73 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.54 -9.88 -47.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283071182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.082 kcal (2) G-P(sol) polarization free energy of solvation -37.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds