Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86789 * 120.00268 * 2 1 4 4 H 1.48499 * 109.47461 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47309 * 299.99551 * 3 2 1 6 6 H 1.48501 * 109.47425 * 59.99465 * 3 2 1 7 7 C 1.38813 * 119.99510 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.46510 * 120.00034 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47096 * 180.02562 * 10 9 7 12 12 H 1.08993 * 112.84950 * 316.19165 * 11 10 9 13 13 C 1.53784 * 113.61537 * 87.50447 * 11 10 9 14 14 C 1.53784 * 87.07991 * 139.97615 * 13 11 10 15 15 H 1.08997 * 113.68856 * 220.00397 * 14 13 11 16 16 N 1.46499 * 113.60995 * 89.11676 * 14 13 11 17 17 C 1.34779 * 120.00266 * 107.50316 * 16 14 13 18 18 O 1.21585 * 119.99435 * 359.97438 * 17 16 14 19 19 C 1.47591 * 120.00253 * 179.97438 * 17 16 14 20 20 C 1.39967 * 120.59527 * 319.22899 * 19 17 16 21 21 C 1.38351 * 118.34900 * 179.97438 * 20 19 17 22 22 C 1.38394 * 119.45372 * 359.97438 * 21 20 19 23 23 N 1.31845 * 121.18144 * 0.02562 * 22 21 20 24 24 C 1.32264 * 121.80204 * 359.97438 * 23 22 21 25 25 N 1.39357 * 119.79847 * 180.27599 * 24 23 22 26 26 C 1.35938 * 126.10210 * 332.04203 * 25 24 23 27 27 C 1.35239 * 107.59846 * 179.83962 * 26 25 24 28 28 C 1.40008 * 107.97253 * 0.42344 * 27 26 25 29 29 N 1.30788 * 108.37927 * 359.73798 * 28 27 26 30 30 C 1.53775 * 87.08305 * 334.56683 * 14 13 11 31 31 H 0.97005 * 120.00134 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00378 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.46869 * 59.99685 * 10 9 7 34 34 H 1.09004 * 109.46823 * 300.00550 * 10 9 7 35 35 H 1.08997 * 113.61061 * 25.42861 * 13 11 10 36 36 H 1.08997 * 113.61294 * 254.52430 * 13 11 10 37 37 H 0.96997 * 120.00055 * 287.49606 * 16 14 13 38 38 H 1.08002 * 120.82775 * 359.97438 * 20 19 17 39 39 H 1.08000 * 120.27332 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.41237 * 180.02562 * 22 21 20 41 41 H 1.07994 * 126.20181 * 359.97438 * 26 25 24 42 42 H 1.07998 * 126.01598 * 180.16010 * 27 26 25 43 43 H 1.08000 * 125.81477 * 179.76182 * 28 27 26 44 44 H 1.08995 * 113.61435 * 139.98234 * 30 14 13 45 45 H 1.09000 * 113.61620 * 270.88580 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8197 -0.0001 12 1 0.2373 -4.6705 0.6949 13 6 0.6170 -5.2478 -1.4081 14 6 0.7048 -6.6997 -0.9090 15 1 1.1232 -7.3900 -1.6414 16 7 -0.5388 -7.1905 -0.3102 17 6 -1.2956 -8.0897 -0.9701 18 8 -0.9462 -8.4931 -2.0625 19 6 -2.5482 -8.5846 -0.3666 20 6 -2.6115 -8.8833 0.9994 21 6 -3.8093 -9.3437 1.5164 22 6 -4.8997 -9.4937 0.6775 23 7 -4.8177 -9.2062 -0.6066 24 6 -3.6970 -8.7630 -1.1515 25 7 -3.6587 -8.4664 -2.5126 26 6 -4.4265 -9.0368 -3.4785 27 6 -4.0851 -8.4718 -4.6589 28 6 -3.0735 -7.5356 -4.4132 29 7 -2.8179 -7.5317 -3.1305 30 6 1.7300 -6.2002 0.1226 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3880 -0.0002 33 1 2.6845 -3.7146 0.8905 34 1 2.6845 -3.7146 -0.8894 35 1 1.3412 -5.0093 -2.1870 36 1 -0.3957 -4.9330 -1.6595 37 1 -0.8177 -6.8685 0.5612 38 1 -1.7467 -8.7576 1.6341 39 1 -3.8930 -9.5832 2.5662 40 1 -5.8346 -9.8527 1.0819 41 1 -5.1751 -9.8008 -3.3300 42 1 -4.5141 -8.7051 -5.6222 43 1 -2.5872 -6.9210 -5.1562 44 1 1.6157 -6.6543 1.1069 45 1 2.7584 -6.2221 -0.2379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283071182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = 114.044271 kcal Electronic energy + Delta-G solvation = -28800.386749 eV Core-core repulsion = 24820.712486 eV Total energy + Delta-G solvation = -3979.674263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.65360 -41.40148 -40.68637 -39.21003 -36.34599 -34.92136 -34.45325 -33.59845 -32.64798 -31.34935 -30.52374 -28.53880 -26.63139 -26.10891 -25.16659 -25.01652 -23.09160 -22.46194 -22.04997 -21.64039 -20.32545 -19.49088 -19.07290 -18.72312 -17.82496 -16.97607 -16.68971 -16.51818 -16.35773 -16.01909 -15.92579 -15.56614 -15.41755 -15.21374 -15.03465 -14.69706 -14.48840 -14.34277 -14.20297 -13.73481 -13.70724 -13.54623 -13.38531 -13.12784 -12.92324 -12.72057 -12.13280 -11.94481 -11.77125 -11.76311 -11.46874 -11.35437 -11.23515 -11.15771 -11.06218 -10.87664 -10.70395 -10.24576 -9.95204 -9.37365 -8.98920 -7.95851 -5.24411 -0.59707 -0.10724 1.04972 1.18821 1.45871 1.47091 1.57240 1.66419 1.85945 2.07246 2.55282 2.62391 3.24705 3.37173 3.38231 3.57602 3.60175 3.62769 3.83465 3.90566 3.93738 3.97344 4.02597 4.16529 4.31772 4.39712 4.54749 4.55789 4.69550 4.75753 4.84168 4.84547 4.89275 4.91832 4.97340 4.99022 5.00516 5.15293 5.27025 5.34750 5.38308 5.48699 5.58965 5.67611 6.05727 6.26785 6.37416 6.48894 6.77989 7.20547 7.32411 8.10456 8.32652 9.28092 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.002455 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.054289 B =11403.376066 C =11886.325027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.746 5.746 10 C 0.161 3.839 11 C -0.111 4.111 12 H 0.083 0.917 13 C -0.141 4.141 14 C 0.133 3.867 15 H 0.092 0.908 16 N -0.694 5.694 17 C 0.571 3.429 18 O -0.548 6.548 19 C -0.204 4.204 20 C -0.023 4.023 21 C -0.167 4.167 22 C 0.148 3.852 23 N -0.522 5.522 24 C 0.383 3.617 25 N -0.343 5.343 26 C 0.058 3.942 27 C -0.255 4.255 28 C 0.042 3.958 29 N -0.289 5.289 30 C -0.112 4.112 31 H 0.250 0.750 32 H 0.372 0.628 33 H 0.025 0.975 34 H 0.019 0.981 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.410 0.590 38 H 0.177 0.823 39 H 0.195 0.805 40 H 0.211 0.789 41 H 0.200 0.800 42 H 0.186 0.814 43 H 0.206 0.794 44 H 0.096 0.904 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 -26.873 2.502 28.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.389 5.389 10 C 0.034 3.966 11 C -0.129 4.129 12 H 0.101 0.899 13 C -0.180 4.180 14 C 0.027 3.973 15 H 0.110 0.890 16 N -0.345 5.345 17 C 0.358 3.642 18 O -0.425 6.425 19 C -0.212 4.212 20 C -0.050 4.050 21 C -0.187 4.187 22 C -0.010 4.010 23 N -0.235 5.235 24 C 0.156 3.844 25 N -0.122 5.122 26 C -0.081 4.081 27 C -0.283 4.283 28 C -0.147 4.147 29 N -0.107 5.107 30 C -0.150 4.150 31 H 0.059 0.941 32 H 0.203 0.797 33 H 0.043 0.957 34 H 0.037 0.963 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.246 0.754 38 H 0.195 0.805 39 H 0.212 0.788 40 H 0.228 0.772 41 H 0.217 0.783 42 H 0.203 0.797 43 H 0.223 0.777 44 H 0.115 0.885 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.331 -26.702 2.175 28.369 hybrid contribution -0.025 1.351 -0.281 1.380 sum -9.356 -25.352 1.894 27.089 Atomic orbital electron populations 1.69837 1.06694 1.25935 1.59774 1.25599 0.96421 1.01225 1.03868 0.85055 0.78266 0.79686 0.76665 1.18907 1.22181 1.21861 1.19708 0.91530 0.85479 1.40823 0.90604 1.42614 1.05569 1.01385 1.89288 1.20829 0.93714 0.84453 0.97559 1.22677 0.98492 0.94582 0.97182 0.89886 1.23377 1.00743 0.96400 0.97455 1.21698 0.84745 0.94110 0.96735 0.89041 1.45423 1.23259 1.43282 1.22543 1.17942 0.83020 0.78989 0.84292 1.90764 1.71865 1.59122 1.20774 1.20596 0.93856 1.09977 0.96801 1.22166 1.00733 0.91285 0.90769 1.22644 0.91912 1.00042 1.04102 1.23617 1.01048 0.90832 0.85549 1.67105 1.23639 1.15984 1.16822 1.17834 0.89872 0.94730 0.82005 1.45800 1.30387 1.31778 1.04266 1.23317 0.97005 0.99986 0.87832 1.21998 1.03619 1.02732 0.99932 1.24639 0.97286 0.99286 0.93471 1.77674 1.13071 1.10035 1.09929 1.23221 0.98807 0.93096 0.99901 0.94089 0.79697 0.95727 0.96270 0.89851 0.93941 0.75369 0.80527 0.78763 0.77240 0.78271 0.79709 0.77736 0.88507 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -39.06 5.60 -343.43 -1.92 -40.99 16 10 C 0.16 6.42 6.10 86.38 0.53 6.95 16 11 C -0.11 -3.45 3.63 -10.27 -0.04 -3.49 16 12 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.14 -4.57 7.43 31.12 0.23 -4.34 16 14 C 0.13 3.48 4.32 45.52 0.20 3.67 16 15 H 0.09 2.60 7.46 -2.39 -0.02 2.58 16 16 N -0.69 -16.89 5.20 -443.15 -2.31 -19.20 16 17 C 0.57 16.50 6.40 86.71 0.56 17.05 16 18 O -0.55 -20.09 13.83 -3.98 -0.06 -20.15 16 19 C -0.20 -4.86 5.77 -19.90 -0.11 -4.98 16 20 C -0.02 -0.31 9.50 22.72 0.22 -0.09 16 21 C -0.17 -1.30 10.09 22.33 0.23 -1.07 16 22 C 0.15 1.62 11.17 84.73 0.95 2.57 16 23 N -0.52 -10.75 10.02 -191.96 -1.92 -12.68 16 24 C 0.38 10.13 7.37 133.26 0.98 11.12 16 25 N -0.34 -10.24 3.44 -191.53 -0.66 -10.89 16 26 C 0.06 1.38 11.22 83.36 0.94 2.32 16 27 C -0.25 -5.56 10.80 22.01 0.24 -5.33 16 28 C 0.04 1.16 12.02 85.28 1.02 2.18 16 29 N -0.29 -9.77 8.80 -56.96 -0.50 -10.27 16 30 C -0.11 -2.49 7.39 31.12 0.23 -2.26 16 31 H 0.25 15.20 8.31 -92.70 -0.77 14.42 16 32 H 0.37 20.86 7.67 -92.71 -0.71 20.15 16 33 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.02 0.78 7.84 -2.38 -0.02 0.76 16 35 H 0.08 2.76 7.89 -2.39 -0.02 2.75 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.41 7.89 8.25 -92.71 -0.77 7.13 16 38 H 0.18 1.22 7.97 -2.91 -0.02 1.20 16 39 H 0.20 -0.21 8.06 -2.91 -0.02 -0.24 16 40 H 0.21 0.49 8.06 -2.91 -0.02 0.46 16 41 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.21 4.43 8.06 -2.91 -0.02 4.40 16 44 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.11 2.20 8.10 -2.39 -0.02 2.18 16 Total: -1.00 -86.13 383.73 1.96 -84.17 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.44 Total: 34.70 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 7.46 Total: 6.99 kcal Atomic # 7 Polarization: -147.77 SS G_CDS: -7.03 Total: -154.80 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.06 Total: -20.15 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -86.13 1.96 -84.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283071182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.213 kcal (2) G-P(sol) polarization free energy of solvation -86.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds