Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47328 * 300.00099 * 3 2 1 6 6 H 1.48506 * 109.47244 * 60.00025 * 3 2 1 7 7 C 1.38792 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99707 * 179.97438 * 7 2 1 9 9 S 1.76207 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.80990 * 100.00056 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47068 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99616 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99654 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.46635 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.85575 * 316.19096 * 15 14 13 17 17 C 1.53959 * 113.74592 * 87.40578 * 15 14 13 18 18 C 1.53780 * 87.02352 * 139.93973 * 17 15 14 19 19 H 1.09002 * 113.61394 * 89.22770 * 18 17 15 20 20 N 1.46894 * 113.61462 * 220.04992 * 18 17 15 21 21 C 1.46905 * 110.99921 * 254.13605 * 20 18 17 22 22 C 1.50696 * 109.47402 * 179.97438 * 21 20 18 23 23 O 1.21290 * 119.99619 * 0.02562 * 22 21 20 24 24 N 1.34775 * 120.00177 * 179.97438 * 22 21 20 25 25 C 1.47066 * 136.05557 * 180.02562 * 24 22 21 26 26 C 1.53504 * 88.04678 * 152.88612 * 25 24 22 27 27 C 1.47063 * 136.05633 * 0.05167 * 24 22 21 28 28 C 1.53784 * 87.17330 * 334.63943 * 18 17 15 29 29 H 0.96995 * 119.99792 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47934 * 60.00078 * 10 9 7 31 31 H 1.09005 * 109.47295 * 299.99913 * 10 9 7 32 32 H 0.96999 * 120.00001 * 0.02562 * 13 11 10 33 33 H 1.08992 * 109.47114 * 60.00362 * 14 13 11 34 34 H 1.08997 * 109.46931 * 300.00423 * 14 13 11 35 35 H 1.09003 * 113.61054 * 25.41557 * 17 15 14 36 36 H 1.08999 * 113.66261 * 254.47059 * 17 15 14 37 37 H 1.00897 * 111.00191 * 18.08880 * 20 18 17 38 38 H 1.08999 * 109.47250 * 59.99264 * 21 20 18 39 39 H 1.09002 * 109.46914 * 299.99767 * 21 20 18 40 40 H 1.09002 * 113.46793 * 267.69584 * 25 24 22 41 41 H 1.08999 * 113.46805 * 38.07951 * 25 24 22 42 42 H 1.09000 * 114.20388 * 139.68671 * 26 25 24 43 43 H 1.08999 * 114.20382 * 272.51056 * 26 25 24 44 44 H 1.08994 * 113.46736 * 321.86643 * 27 24 22 45 45 H 1.09003 * 113.46602 * 92.24602 * 27 24 22 46 46 H 1.08997 * 113.61538 * 139.93652 * 28 18 17 47 47 H 1.09002 * 113.61363 * 270.84185 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0019 10 6 2.5159 -3.8913 -0.0013 11 6 1.9874 -5.3027 -0.0018 12 8 0.7912 -5.5023 -0.0028 13 7 2.8443 -6.3431 -0.0020 14 6 2.3305 -7.7151 -0.0029 15 6 3.5026 -8.6984 -0.0023 16 1 4.2934 -8.4150 -0.6969 17 6 4.0173 -9.0486 1.4058 18 6 4.1668 -10.4946 0.9042 19 1 5.1389 -10.7035 0.4574 20 7 3.7641 -11.5046 1.8919 21 6 4.9376 -12.1733 2.4697 22 6 4.4861 -13.1996 3.4764 23 8 3.3030 -13.3588 3.6912 24 7 5.3967 -13.9413 4.1374 25 6 5.3609 -15.0028 5.1548 26 6 6.6994 -15.5084 4.5987 27 6 6.8635 -14.0451 4.1592 28 6 3.0724 -10.1697 -0.1261 29 1 -0.4849 0.8400 0.0004 30 1 3.1239 -3.7318 0.8891 31 1 3.1252 -3.7309 -0.8908 32 1 3.8010 -6.1834 -0.0015 33 1 1.7223 -7.8747 -0.8932 34 1 1.7215 -7.8756 0.8867 35 1 3.2657 -8.9328 2.1867 36 1 4.9657 -8.5729 1.6557 37 1 3.1892 -11.0958 2.6133 38 1 5.5704 -11.4352 2.9625 39 1 5.5023 -12.6648 1.6775 40 1 5.4289 -14.6277 6.1760 41 1 4.5404 -15.7072 5.0184 42 1 7.4080 -15.8290 5.3624 43 1 6.6025 -16.2143 3.7739 44 1 7.3210 -13.9360 3.1759 45 1 7.3322 -13.4141 4.9143 46 1 3.2589 -10.5978 -1.1110 47 1 2.0619 -10.3611 0.2353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316613513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = -10.380894 kcal Electronic energy + Delta-G solvation = -25565.355757 eV Core-core repulsion = 21683.437214 eV Total energy + Delta-G solvation = -3881.918542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80508 -39.96448 -38.82146 -38.17971 -35.04296 -33.59897 -32.41819 -30.79159 -29.81071 -27.68551 -26.65811 -25.98343 -25.73368 -25.36987 -22.60492 -21.84429 -20.59226 -19.92043 -19.31722 -17.83591 -17.56705 -16.94543 -16.63220 -16.33402 -16.19708 -15.65096 -15.51877 -15.13881 -14.79718 -14.78597 -14.39462 -13.96122 -13.68019 -13.50739 -13.28366 -13.19499 -13.08969 -12.91709 -12.73535 -12.57801 -12.30669 -12.23888 -12.13565 -11.69300 -11.38834 -11.26992 -11.06556 -11.00821 -10.89220 -10.71902 -10.66278 -10.17111 -9.79145 -9.34605 -9.27247 -9.06784 -8.83930 -8.77236 -8.21147 -6.48399 -6.20704 -3.91040 2.14452 2.25700 3.06519 3.14632 3.21985 3.28892 3.33671 3.59360 3.70043 3.77991 3.99225 4.21268 4.23837 4.27984 4.31399 4.47375 4.51610 4.58797 4.74298 4.77041 4.82697 4.83966 4.94930 5.01806 5.09763 5.11939 5.14487 5.19574 5.23056 5.42394 5.48471 5.49030 5.56936 5.63859 5.69504 5.86315 5.87733 5.93712 6.08511 6.15676 6.56055 6.68597 6.90142 7.19013 7.60735 7.72265 7.76067 8.36391 8.66394 9.24665 10.86840 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025547 B = 0.001390 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.777179 B =20145.864871 C =20555.123415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.133 3.867 15 C -0.121 4.121 16 H 0.097 0.903 17 C -0.164 4.164 18 C 0.067 3.933 19 H 0.098 0.902 20 N -0.664 5.664 21 C 0.049 3.951 22 C 0.539 3.461 23 O -0.522 6.522 24 N -0.655 5.655 25 C 0.103 3.897 26 C -0.156 4.156 27 C 0.098 3.902 28 C -0.115 4.115 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.355 0.645 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.104 -31.320 6.765 37.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.316 3.684 12 O -0.392 6.392 13 N -0.393 5.393 14 C 0.009 3.991 15 C -0.140 4.140 16 H 0.115 0.885 17 C -0.204 4.204 18 C -0.043 4.043 19 H 0.116 0.884 20 N -0.296 5.296 21 C -0.083 4.083 22 C 0.329 3.671 23 O -0.396 6.396 24 N -0.393 5.393 25 C -0.020 4.020 26 C -0.194 4.194 27 C -0.025 4.025 28 C -0.154 4.154 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.176 0.824 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.976 -31.997 6.292 36.764 hybrid contribution 2.912 2.136 0.639 3.667 sum 19.887 -29.861 6.931 36.541 Atomic orbital electron populations 1.70031 1.05951 1.27329 1.46965 1.24991 0.95018 0.99018 0.94560 0.86118 0.79562 0.81912 0.77899 1.19645 1.20564 1.20571 1.22913 0.94932 0.91684 1.58802 0.90907 1.85416 1.05003 0.96324 1.96698 1.23529 1.06503 0.95524 1.04826 1.20310 0.86566 0.86320 0.75241 1.90704 1.15396 1.85634 1.47514 1.46004 1.09807 1.05579 1.77864 1.21249 0.95261 0.80248 1.02378 1.22666 0.98363 0.95304 0.97690 0.88525 1.23855 1.01874 0.97253 0.97384 1.23062 0.98893 0.88378 0.94014 0.88369 1.60137 1.17603 1.32630 1.19192 1.21739 0.94121 0.95678 0.96784 1.20277 0.84990 0.80676 0.81202 1.90752 1.16261 1.67062 1.65565 1.49723 1.07909 1.39865 1.41803 1.22927 0.98038 0.88391 0.92631 1.23421 0.97556 0.96252 1.02130 1.23053 0.81138 0.96019 1.02315 1.23037 0.99886 0.93369 0.99131 0.92240 0.89332 0.89282 0.76970 0.91458 0.91552 0.89427 0.91317 0.82430 0.92259 0.88153 0.89771 0.90356 0.89010 0.88637 0.90265 0.89530 0.90862 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 C 0.53 10.09 7.85 -10.98 -0.09 10.00 16 12 O -0.52 -12.11 15.86 5.56 0.09 -12.02 16 13 N -0.74 -9.91 5.56 -60.30 -0.33 -10.24 16 14 C 0.13 1.56 5.52 -4.04 -0.02 1.54 16 15 C -0.12 -0.96 3.75 -89.71 -0.34 -1.29 16 16 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 17 C -0.16 -1.19 7.27 -25.83 -0.19 -1.38 16 18 C 0.07 0.45 4.16 -66.90 -0.28 0.18 16 19 H 0.10 0.54 7.88 -51.93 -0.41 0.13 16 20 N -0.66 -5.54 6.24 -107.13 -0.67 -6.21 16 21 C 0.05 0.33 5.85 -4.98 -0.03 0.30 16 22 C 0.54 5.02 8.12 -10.99 -0.09 4.93 16 23 O -0.52 -7.23 16.98 5.55 0.09 -7.14 16 24 N -0.65 -4.19 3.69 -185.01 -0.68 -4.87 16 25 C 0.10 0.47 8.60 -8.50 -0.07 0.39 16 26 C -0.16 -0.27 8.50 -26.13 -0.22 -0.50 16 27 C 0.10 0.24 8.42 -8.42 -0.07 0.17 16 28 C -0.12 -0.89 7.44 -25.91 -0.19 -1.08 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 31 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 32 H 0.40 4.10 8.47 -40.82 -0.35 3.76 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 35 H 0.09 0.73 7.59 -51.93 -0.39 0.34 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.35 3.30 7.91 -39.29 -0.31 2.99 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.10 0.52 8.13 -51.93 -0.42 0.10 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 43 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 45 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 407.52 15.07 6.14 6.14 Total: -1.00 -38.45 407.52 -10.78 -49.24 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.75 Total: 0.88 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.17 Total: -2.73 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.95 Total: -46.97 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.18 Total: -19.16 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.45 -10.78 -49.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316613513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.855 kcal (2) G-P(sol) polarization free energy of solvation -38.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds