Wall clock time and date at job start Sat Apr 11 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47328 * 300.00099 * 3 2 1 6 6 H 1.48506 * 109.47244 * 60.00025 * 3 2 1 7 7 C 1.38792 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99707 * 179.97438 * 7 2 1 9 9 S 1.76207 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.80990 * 100.00056 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47068 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99616 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99654 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.46635 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.85575 * 316.19096 * 15 14 13 17 17 C 1.53959 * 113.74592 * 87.40578 * 15 14 13 18 18 C 1.53780 * 87.02352 * 139.93973 * 17 15 14 19 19 H 1.09002 * 113.61394 * 89.22770 * 18 17 15 20 20 N 1.46894 * 113.61462 * 220.04992 * 18 17 15 21 21 C 1.46905 * 110.99921 * 254.13605 * 20 18 17 22 22 C 1.50696 * 109.47402 * 179.97438 * 21 20 18 23 23 O 1.21290 * 119.99619 * 0.02562 * 22 21 20 24 24 N 1.34775 * 120.00177 * 179.97438 * 22 21 20 25 25 C 1.47066 * 136.05557 * 180.02562 * 24 22 21 26 26 C 1.53504 * 88.04678 * 152.88612 * 25 24 22 27 27 C 1.47063 * 136.05633 * 0.05167 * 24 22 21 28 28 C 1.53784 * 87.17330 * 334.63943 * 18 17 15 29 29 H 0.96995 * 119.99792 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47934 * 60.00078 * 10 9 7 31 31 H 1.09005 * 109.47295 * 299.99913 * 10 9 7 32 32 H 0.96999 * 120.00001 * 0.02562 * 13 11 10 33 33 H 1.08992 * 109.47114 * 60.00362 * 14 13 11 34 34 H 1.08997 * 109.46931 * 300.00423 * 14 13 11 35 35 H 1.09003 * 113.61054 * 25.41557 * 17 15 14 36 36 H 1.08999 * 113.66261 * 254.47059 * 17 15 14 37 37 H 1.00897 * 111.00191 * 18.08880 * 20 18 17 38 38 H 1.08999 * 109.47250 * 59.99264 * 21 20 18 39 39 H 1.09002 * 109.46914 * 299.99767 * 21 20 18 40 40 H 1.09002 * 113.46793 * 267.69584 * 25 24 22 41 41 H 1.08999 * 113.46805 * 38.07951 * 25 24 22 42 42 H 1.09000 * 114.20388 * 139.68671 * 26 25 24 43 43 H 1.08999 * 114.20382 * 272.51056 * 26 25 24 44 44 H 1.08994 * 113.46736 * 321.86643 * 27 24 22 45 45 H 1.09003 * 113.46602 * 92.24602 * 27 24 22 46 46 H 1.08997 * 113.61538 * 139.93652 * 28 18 17 47 47 H 1.09002 * 113.61363 * 270.84185 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0019 10 6 2.5159 -3.8913 -0.0013 11 6 1.9874 -5.3027 -0.0018 12 8 0.7912 -5.5023 -0.0028 13 7 2.8443 -6.3431 -0.0020 14 6 2.3305 -7.7151 -0.0029 15 6 3.5026 -8.6984 -0.0023 16 1 4.2934 -8.4150 -0.6969 17 6 4.0173 -9.0486 1.4058 18 6 4.1668 -10.4946 0.9042 19 1 5.1389 -10.7035 0.4574 20 7 3.7641 -11.5046 1.8919 21 6 4.9376 -12.1733 2.4697 22 6 4.4861 -13.1996 3.4764 23 8 3.3030 -13.3588 3.6912 24 7 5.3967 -13.9413 4.1374 25 6 5.3609 -15.0028 5.1548 26 6 6.6994 -15.5084 4.5987 27 6 6.8635 -14.0451 4.1592 28 6 3.0724 -10.1697 -0.1261 29 1 -0.4849 0.8400 0.0004 30 1 3.1239 -3.7318 0.8891 31 1 3.1252 -3.7309 -0.8908 32 1 3.8010 -6.1834 -0.0015 33 1 1.7223 -7.8747 -0.8932 34 1 1.7215 -7.8756 0.8867 35 1 3.2657 -8.9328 2.1867 36 1 4.9657 -8.5729 1.6557 37 1 3.1892 -11.0958 2.6133 38 1 5.5704 -11.4352 2.9625 39 1 5.5023 -12.6648 1.6775 40 1 5.4289 -14.6277 6.1760 41 1 4.5404 -15.7072 5.0184 42 1 7.4080 -15.8290 5.3624 43 1 6.6025 -16.2143 3.7739 44 1 7.3210 -13.9360 3.1759 45 1 7.3322 -13.4141 4.9143 46 1 3.2589 -10.5978 -1.1110 47 1 2.0619 -10.3611 0.2353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316613513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:07 Heat of formation + Delta-G solvation = -40.219339 kcal Electronic energy + Delta-G solvation = -25566.649649 eV Core-core repulsion = 21683.437214 eV Total energy + Delta-G solvation = -3883.212435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29365 -40.86461 -39.97551 -38.80680 -36.02695 -34.61059 -34.55477 -31.53104 -31.04249 -28.54298 -27.66588 -27.08678 -26.57368 -26.24555 -23.03203 -22.49793 -21.87259 -20.71650 -19.86147 -19.70824 -18.15850 -17.75822 -17.39885 -17.33607 -17.12305 -16.88384 -16.70640 -16.22177 -16.11883 -15.72571 -15.51857 -15.11376 -14.68884 -14.54135 -14.35146 -14.17316 -13.67840 -13.56260 -13.45232 -13.43568 -13.35545 -13.16181 -12.95068 -12.91353 -12.72080 -12.58657 -12.38142 -11.92433 -11.73846 -11.65826 -11.52920 -11.32980 -11.16039 -10.92300 -10.78832 -10.27016 -10.09266 -9.75373 -9.34478 -8.67397 -8.34854 -6.13335 1.27286 1.41590 1.47586 1.55858 1.58585 1.61900 1.79490 2.26251 2.31412 2.99500 3.12726 3.32104 3.43089 3.54600 3.60668 3.63804 3.90904 3.95359 4.04487 4.11885 4.25445 4.29273 4.29902 4.36189 4.39071 4.47019 4.50524 4.50603 4.62544 4.66887 4.71542 4.81033 4.87047 4.88782 4.92054 5.01073 5.11882 5.21063 5.31334 5.37101 5.41897 5.51382 6.06194 6.19955 6.25171 6.53494 6.71768 7.06464 7.11651 7.26632 8.74801 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025547 B = 0.001390 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.777179 B =20145.864871 C =20555.123415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.128 4.128 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.709 5.709 14 C 0.132 3.868 15 C -0.108 4.108 16 H 0.121 0.879 17 C -0.161 4.161 18 C 0.078 3.922 19 H 0.124 0.876 20 N -0.683 5.683 21 C 0.056 3.944 22 C 0.527 3.473 23 O -0.585 6.585 24 N -0.662 5.662 25 C 0.087 3.913 26 C -0.138 4.138 27 C 0.098 3.902 28 C -0.120 4.120 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.417 0.583 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.345 0.655 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.928 -31.665 6.593 40.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.315 3.685 12 O -0.449 6.449 13 N -0.363 5.363 14 C 0.008 3.992 15 C -0.127 4.127 16 H 0.139 0.861 17 C -0.200 4.200 18 C -0.032 4.032 19 H 0.142 0.858 20 N -0.314 5.314 21 C -0.075 4.075 22 C 0.318 3.682 23 O -0.465 6.465 24 N -0.398 5.398 25 C -0.036 4.036 26 C -0.175 4.175 27 C -0.023 4.023 28 C -0.159 4.159 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.254 0.746 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.164 0.836 38 H 0.099 0.901 39 H 0.138 0.862 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.135 0.865 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.122 0.878 46 H 0.101 0.899 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.922 -32.398 6.125 39.595 hybrid contribution 1.466 2.047 0.738 2.624 sum 23.388 -30.351 6.863 38.927 Atomic orbital electron populations 1.70199 1.08050 1.28552 1.48105 1.26146 0.95953 1.03377 0.93707 0.84885 0.78642 0.76226 0.78055 1.17888 1.19938 1.19972 1.23244 0.95373 0.91907 1.58771 0.89794 1.85635 1.10816 0.99431 1.97054 1.23367 1.03441 0.94262 1.06859 1.20139 0.86271 0.86871 0.75182 1.90693 1.17653 1.86196 1.50359 1.45738 1.10245 1.05034 1.75243 1.21372 0.96921 0.79872 1.01046 1.22634 0.97193 0.93961 0.98955 0.86103 1.23804 1.02071 0.97793 0.96298 1.23064 0.99327 0.87669 0.93144 0.85835 1.60112 1.18653 1.33189 1.19449 1.21785 0.93614 0.95361 0.96791 1.20863 0.84597 0.81096 0.81689 1.90712 1.18862 1.69152 1.67769 1.49966 1.09712 1.38968 1.41141 1.23195 0.99215 0.88079 0.93095 1.23370 0.95806 0.95979 1.02393 1.23336 0.78542 0.96495 1.03945 1.23048 0.99434 0.93341 1.00077 0.92008 0.87182 0.87033 0.74567 0.92685 0.93235 0.91136 0.89587 0.83564 0.90125 0.86157 0.88792 0.92345 0.86471 0.88764 0.88543 0.87750 0.89865 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.62 13.22 21.65 0.29 -56.33 16 2 C 0.01 0.73 5.49 84.85 0.47 1.20 16 3 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.32 9.50 67.95 0.65 -30.68 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 9 S -0.16 -8.83 20.57 -56.49 -1.16 -9.99 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.67 16 11 C 0.53 19.97 7.85 87.66 0.69 20.66 16 12 O -0.57 -27.48 15.86 -3.02 -0.05 -27.53 16 13 N -0.71 -17.79 5.56 -463.07 -2.57 -20.37 16 14 C 0.13 3.00 5.52 86.38 0.48 3.48 16 15 C -0.11 -1.46 3.75 -10.21 -0.04 -1.50 16 16 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 17 C -0.16 -1.96 7.27 31.18 0.23 -1.73 16 18 C 0.08 0.87 4.16 45.44 0.19 1.06 16 19 H 0.12 0.82 7.88 -2.39 -0.02 0.80 16 20 N -0.68 -10.86 6.24 -492.85 -3.07 -13.93 16 21 C 0.06 0.64 5.85 85.55 0.50 1.14 16 22 C 0.53 9.78 8.12 87.66 0.71 10.49 16 23 O -0.59 -17.26 16.98 -3.06 -0.05 -17.31 16 24 N -0.66 -7.82 3.69 -857.64 -3.16 -10.98 16 25 C 0.09 0.74 8.60 83.18 0.72 1.46 16 26 C -0.14 -0.16 8.50 30.99 0.26 0.11 16 27 C 0.10 0.19 8.42 83.24 0.70 0.89 16 28 C -0.12 -1.69 7.44 31.12 0.23 -1.46 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 31 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 32 H 0.42 7.20 8.47 -92.71 -0.79 6.41 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.32 7.86 -2.39 -0.02 1.31 16 35 H 0.07 1.14 7.59 -2.39 -0.02 1.12 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.34 6.63 7.91 -89.70 -0.71 5.92 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.12 0.87 8.13 -2.39 -0.02 0.85 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -89.35 407.52 -2.06 -91.41 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.51 Total: 18.85 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 6.22 Total: 0.45 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -8.53 Total: -101.61 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.10 Total: -44.84 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -89.35 -2.06 -91.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316613513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.191 kcal (2) G-P(sol) polarization free energy of solvation -89.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds