Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99859 * 2 1 4 4 H 1.48501 * 109.47273 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47219 * 300.00042 * 3 2 1 6 6 H 1.48497 * 109.47008 * 60.00128 * 3 2 1 7 7 C 1.38810 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00244 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99769 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47184 * 35.00185 * 10 9 7 12 12 C 1.53002 * 109.46778 * 154.99662 * 10 9 7 13 13 N 1.46495 * 109.47418 * 304.99793 * 12 10 9 14 14 C 1.34782 * 120.00062 * 179.97438 * 13 12 10 15 15 O 1.21606 * 120.00124 * 0.02562 * 14 13 12 16 16 C 1.47419 * 119.99745 * 180.02562 * 14 13 12 17 17 C 1.41361 * 126.41026 * 359.97438 * 16 14 13 18 18 N 1.30454 * 108.07755 * 180.02562 * 17 16 14 19 19 N 1.39940 * 108.91421 * 0.02562 * 18 17 16 20 20 C 1.39914 * 125.77105 * 180.02562 * 19 18 17 21 21 C 1.39328 * 120.85196 * 179.74042 * 20 19 18 22 22 C 1.38000 * 119.08046 * 179.74752 * 21 20 19 23 23 N 1.31940 * 120.83229 * 0.53657 * 22 21 20 24 24 C 1.31935 * 121.88292 * 359.73803 * 23 22 21 25 25 C 1.38000 * 120.83444 * 359.97431 * 24 23 22 26 26 C 1.34600 * 108.44665 * 359.97438 * 19 18 17 27 27 C 1.52991 * 109.47054 * 274.99584 * 10 9 7 28 28 C 1.53003 * 117.49817 * 128.74907 * 27 10 9 29 29 C 1.53006 * 117.50041 * 60.08865 * 27 10 9 30 30 H 0.96993 * 119.99949 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00523 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47210 * 184.99625 * 12 10 9 33 33 H 1.09005 * 109.47219 * 65.00476 * 12 10 9 34 34 H 0.97003 * 120.00246 * 0.02562 * 13 12 10 35 35 H 1.08001 * 125.96522 * 0.02562 * 17 16 14 36 36 H 1.08007 * 120.45900 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.58498 * 180.24822 * 22 21 20 38 38 H 1.08002 * 119.58134 * 180.02562 * 24 23 22 39 39 H 1.07997 * 120.46257 * 180.02562 * 25 24 23 40 40 H 1.08000 * 126.31054 * 180.02562 * 26 19 18 41 41 H 1.09007 * 115.55153 * 274.41632 * 27 10 9 42 42 H 1.09003 * 117.49922 * 359.97438 * 28 27 10 43 43 H 1.09000 * 117.49769 * 145.02073 * 28 27 10 44 44 H 1.08997 * 117.49799 * 214.97936 * 29 27 10 45 45 H 1.08992 * 117.49559 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6568 -0.0016 11 1 2.9684 -3.5508 0.5886 12 6 1.1806 -4.7524 0.6070 13 7 0.7330 -4.3363 1.9384 14 6 -0.0574 -5.1485 2.6680 15 8 -0.3987 -6.2268 2.2212 16 6 -0.5082 -4.7295 4.0075 17 6 -0.1949 -3.5130 4.6559 18 7 -0.7787 -3.5141 5.8225 19 7 -1.4833 -4.7133 5.9761 20 6 -2.2366 -5.0816 7.0962 21 6 -2.9040 -6.3040 7.1379 22 6 -3.6323 -6.6324 8.2631 23 7 -3.7094 -5.8015 9.2851 24 6 -3.0965 -4.6332 9.2811 25 6 -2.3435 -4.2331 8.1961 26 6 -1.3144 -5.4520 4.8637 27 6 2.4231 -4.0349 -1.4384 28 6 3.8836 -4.3884 -1.7267 29 6 3.3046 -3.0611 -2.2232 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0016 32 1 1.7554 -5.6749 0.6887 33 1 0.3135 -4.9201 -0.0320 34 1 1.0049 -3.4760 2.2946 35 1 0.4204 -2.7210 4.2554 36 1 -2.8490 -6.9866 6.3027 37 1 -4.1495 -7.5796 8.3058 38 1 -3.1845 -3.9820 10.1382 39 1 -1.8439 -3.2756 8.1994 40 1 -1.7328 -6.4297 4.6756 41 1 1.6556 -4.5766 -1.9914 42 1 4.5845 -4.3510 -0.8928 43 1 4.0769 -5.1622 -2.4696 44 1 3.1172 -2.9624 -3.2924 45 1 3.6241 -2.1509 -1.7159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317025000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = 122.932963 kcal Electronic energy + Delta-G solvation = -28106.422883 eV Core-core repulsion = 24127.134063 eV Total energy + Delta-G solvation = -3979.288820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00505 -40.29141 -39.02955 -37.50233 -34.76684 -34.61683 -33.39821 -31.92360 -31.15070 -30.69960 -30.18305 -28.01520 -24.99806 -24.22478 -23.70211 -22.80741 -21.80502 -21.67057 -21.21089 -20.10828 -19.58785 -18.82073 -17.43063 -16.76949 -16.45003 -16.21470 -15.87204 -15.62499 -15.26475 -15.17308 -14.76933 -14.51410 -14.38073 -14.18641 -14.08710 -13.87342 -13.52671 -13.21974 -12.99887 -12.90565 -12.24959 -12.12358 -11.42997 -11.28363 -11.23950 -11.16332 -10.91080 -10.88831 -10.74090 -10.12550 -10.07266 -9.96956 -9.79481 -9.70749 -9.59503 -9.52555 -9.32857 -9.02382 -8.86106 -8.54722 -7.08561 -5.85313 -3.15061 0.24969 0.62530 1.66039 1.83533 2.07081 3.36553 3.36808 3.42957 3.45500 3.49037 3.58774 3.98987 4.00363 4.23571 4.38644 4.50930 4.51545 4.56482 4.71342 4.91317 5.04921 5.08704 5.20261 5.25406 5.32375 5.42326 5.49003 5.56373 5.59007 5.62368 5.73130 5.87937 5.98775 6.04757 6.06046 6.14877 6.19155 6.37903 6.52304 6.57589 6.59892 6.74682 6.87064 6.95446 7.20516 7.49434 7.62326 7.90946 8.31331 8.52869 9.43889 9.97780 10.33976 11.36293 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.002456 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.632264 B =11397.815208 C =13131.841896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.056 0.944 12 C 0.121 3.879 13 N -0.705 5.705 14 C 0.590 3.410 15 O -0.559 6.559 16 C -0.264 4.264 17 C 0.105 3.895 18 N -0.288 5.288 19 N -0.324 5.324 20 C 0.208 3.792 21 C -0.197 4.197 22 C 0.128 3.872 23 N -0.495 5.495 24 C 0.124 3.876 25 C -0.173 4.173 26 C 0.123 3.877 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.410 0.590 35 H 0.205 0.795 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.193 0.807 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 -12.362 13.094 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.004 4.004 13 N -0.355 5.355 14 C 0.377 3.623 15 O -0.439 6.439 16 C -0.278 4.278 17 C -0.084 4.084 18 N -0.104 5.104 19 N -0.097 5.097 20 C 0.107 3.893 21 C -0.220 4.220 22 C -0.029 4.029 23 N -0.204 5.204 24 C -0.033 4.033 25 C -0.194 4.194 26 C -0.023 4.023 27 C -0.181 4.181 28 C -0.234 4.234 29 C -0.194 4.194 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.246 0.754 35 H 0.221 0.779 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.169 0.831 40 H 0.209 0.791 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.269 -12.550 14.632 19.552 hybrid contribution 0.914 1.315 -1.729 2.357 sum -2.355 -11.235 12.903 17.270 Atomic orbital electron populations 1.69667 1.05027 1.25598 1.57223 1.24717 0.95419 0.97546 1.02852 0.86213 0.78829 0.84461 0.77222 1.20588 1.21952 1.21903 1.19191 0.90842 0.83794 1.42983 0.91075 1.42469 1.05836 0.99397 1.88084 1.20066 0.94355 0.86127 0.91285 0.92625 1.21609 0.98640 0.97573 0.82530 1.45727 1.50286 1.21635 1.17882 1.17084 0.78220 0.83950 0.83090 1.90748 1.58151 1.22737 1.72310 1.20485 1.10627 0.97795 0.98856 1.24508 0.96332 0.97096 0.90494 1.77309 1.12384 1.00387 1.20346 1.45600 1.37672 1.14328 1.12066 1.17829 0.91552 0.94235 0.85671 1.21953 1.01491 0.96270 1.02301 1.22675 0.94189 0.98615 0.87449 1.67721 1.20339 1.04070 1.28308 1.22766 0.90987 0.92628 0.96870 1.21991 1.02538 1.01792 0.93122 1.23008 0.96190 0.97848 0.85238 1.23027 0.92159 1.03075 0.99804 1.22967 0.97287 0.99812 1.03358 1.22786 1.03404 0.94058 0.99116 0.93518 0.78021 0.91499 0.91652 0.75379 0.77882 0.83720 0.81598 0.81664 0.83057 0.79050 0.89113 0.89531 0.90093 0.90233 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.07 13.06 55.49 0.72 -25.35 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.05 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -5.80 8.63 -15.06 -0.13 -5.93 16 8 H 0.07 1.71 6.90 -52.49 -0.36 1.35 16 9 N -0.72 -15.64 4.54 -53.43 -0.24 -15.88 16 10 C 0.19 3.38 2.70 -67.93 -0.18 3.20 16 11 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 12 C 0.12 1.95 5.21 -4.04 -0.02 1.93 16 13 N -0.70 -11.10 5.38 -61.38 -0.33 -11.43 16 14 C 0.59 9.49 7.81 -12.52 -0.10 9.39 16 15 O -0.56 -10.37 16.90 5.27 0.09 -10.28 16 16 C -0.26 -3.67 6.13 -105.05 -0.64 -4.31 16 17 C 0.11 1.40 11.50 -16.95 -0.19 1.20 16 18 N -0.29 -3.92 11.87 30.88 0.37 -3.56 16 19 N -0.32 -3.94 3.76 -10.03 -0.04 -3.98 16 20 C 0.21 2.16 6.73 -83.36 -0.56 1.60 16 21 C -0.20 -1.59 9.52 -39.26 -0.37 -1.96 16 22 C 0.13 0.96 11.17 -17.59 -0.20 0.77 16 23 N -0.49 -4.53 10.36 -13.33 -0.14 -4.67 16 24 C 0.12 1.02 11.17 -17.59 -0.20 0.82 16 25 C -0.17 -1.63 9.73 -39.26 -0.38 -2.01 16 26 C 0.12 1.48 10.64 -16.42 -0.17 1.30 16 27 C -0.16 -2.66 5.36 -90.62 -0.49 -3.14 16 28 C -0.20 -2.87 10.18 -26.69 -0.27 -3.14 16 29 C -0.16 -2.69 9.78 -26.69 -0.26 -2.95 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 9.30 7.80 -40.82 -0.32 8.98 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.41 6.37 7.09 -40.82 -0.29 6.09 16 35 H 0.20 2.36 7.50 -52.49 -0.39 1.97 16 36 H 0.15 0.85 6.85 -52.48 -0.36 0.49 16 37 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.15 1.40 7.78 -52.49 -0.41 1.00 16 40 H 0.19 1.78 7.09 -52.49 -0.37 1.41 16 41 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 42 H 0.09 1.21 8.05 -51.93 -0.42 0.80 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.10 2.02 6.23 -51.93 -0.32 1.70 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -31.43 386.75 -8.78 -40.21 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -5.75 Total: 16.63 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -4.27 Total: -3.56 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: 0.34 Total: -64.86 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.43 -8.78 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317025000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.144 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds