Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 120.00344 * 2 1 4 4 H 1.48498 * 109.47494 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47320 * 300.00507 * 3 2 1 6 6 H 1.48504 * 109.46937 * 60.00035 * 3 2 1 7 7 C 1.38813 * 119.99424 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99596 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99779 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47410 * 324.99933 * 10 9 7 12 12 C 1.53002 * 109.46882 * 204.99653 * 10 9 7 13 13 N 1.46501 * 109.47014 * 55.00678 * 12 10 9 14 14 C 1.34775 * 120.00377 * 179.97438 * 13 12 10 15 15 O 1.21615 * 119.99558 * 0.02562 * 14 13 12 16 16 C 1.47415 * 120.00194 * 179.97438 * 14 13 12 17 17 C 1.41361 * 126.40940 * 0.03034 * 16 14 13 18 18 N 1.30454 * 108.07730 * 179.97438 * 17 16 14 19 19 N 1.39928 * 108.91411 * 0.02562 * 18 17 16 20 20 C 1.39924 * 125.77685 * 180.02562 * 19 18 17 21 21 C 1.39326 * 120.85937 * 179.69254 * 20 19 18 22 22 C 1.38006 * 119.07828 * 179.72944 * 21 20 19 23 23 N 1.31934 * 120.83217 * 0.56225 * 22 21 20 24 24 C 1.31937 * 121.88971 * 359.71043 * 23 22 21 25 25 C 1.38008 * 120.82675 * 0.02562 * 24 23 22 26 26 C 1.34604 * 108.45253 * 359.97438 * 19 18 17 27 27 C 1.52999 * 109.47072 * 85.00341 * 10 9 7 28 28 C 1.53007 * 117.49879 * 8.74116 * 27 10 9 29 29 C 1.52999 * 117.49766 * 300.08399 * 27 10 9 30 30 H 0.97002 * 119.99845 * 359.97438 * 1 2 3 31 31 H 0.96992 * 119.99840 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47366 * 295.00346 * 12 10 9 33 33 H 1.09004 * 109.47133 * 174.99887 * 12 10 9 34 34 H 0.97004 * 119.99820 * 359.97438 * 13 12 10 35 35 H 1.07998 * 125.96424 * 0.24133 * 17 16 14 36 36 H 1.08000 * 120.45425 * 0.02562 * 21 20 19 37 37 H 1.07997 * 119.58104 * 180.25251 * 22 21 20 38 38 H 1.07991 * 119.58640 * 180.02562 * 24 23 22 39 39 H 1.08007 * 120.45675 * 180.02562 * 25 24 23 40 40 H 1.07997 * 126.31550 * 180.02562 * 26 19 18 41 41 H 1.08998 * 115.55536 * 154.41425 * 27 10 9 42 42 H 1.09001 * 117.49750 * 0.02562 * 28 27 10 43 43 H 1.09001 * 117.49558 * 145.02212 * 28 27 10 44 44 H 1.09004 * 117.50274 * 214.97823 * 29 27 10 45 45 H 1.09002 * 117.49820 * 0.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5504 -0.5917 12 6 1.1802 -4.7519 -0.6110 13 7 0.7326 -4.3347 -1.9422 14 6 -0.0570 -5.1465 -2.6729 15 8 -0.3983 -6.2252 -2.2269 16 6 -0.5078 -4.7264 -4.0120 17 6 -0.1951 -3.5090 -4.6590 18 7 -0.7786 -3.5092 -5.8258 19 7 -1.4833 -4.7082 -5.9803 20 6 -2.2357 -5.0761 -7.1012 21 6 -2.8937 -6.3033 -7.1487 22 6 -3.6303 -6.6264 -8.2702 23 7 -3.7062 -5.7952 -9.2919 24 6 -3.0931 -4.6269 -9.2871 25 6 -2.3410 -4.2274 -8.2011 26 6 -1.3139 -5.4482 -4.8688 27 6 2.4229 -4.0363 1.4349 28 6 1.8152 -3.1997 2.5627 29 6 3.3010 -3.0613 2.2217 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 0.3131 -4.9200 0.0277 33 1 1.7550 -5.6744 -0.6937 34 1 1.0046 -3.4741 -2.2976 35 1 0.4230 -2.7188 -4.2592 36 1 -2.8321 -6.9900 -6.3174 37 1 -4.1470 -7.5737 -8.3139 38 1 -3.1808 -3.9752 -10.1437 39 1 -1.8420 -3.2696 -8.2033 40 1 -1.7317 -6.4264 -4.6819 41 1 2.5642 -5.1014 1.6184 42 1 1.1551 -2.3793 2.2812 43 1 1.5571 -3.7145 3.4882 44 1 4.0198 -3.4849 2.9232 45 1 3.6184 -2.1493 1.7161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317025001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = 126.090220 kcal Electronic energy + Delta-G solvation = -28228.942334 eV Core-core repulsion = 24249.790423 eV Total energy + Delta-G solvation = -3979.151911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00558 -40.29186 -39.03513 -37.56758 -34.74601 -34.45881 -33.26797 -31.92402 -31.09910 -30.69997 -30.15441 -28.10991 -25.00377 -24.22562 -23.70175 -22.96725 -21.90101 -21.47668 -21.19728 -20.01848 -19.28683 -18.69193 -17.39439 -16.79911 -16.45533 -16.21930 -15.87376 -15.62580 -15.36918 -15.09568 -14.72118 -14.51289 -14.47825 -14.18276 -14.04597 -13.86506 -13.49557 -13.06628 -13.03899 -12.86354 -12.25034 -12.07797 -11.34393 -11.32981 -11.19952 -11.16511 -10.92176 -10.87731 -10.53946 -10.11883 -10.07164 -9.79554 -9.70803 -9.68842 -9.59530 -9.47492 -9.19066 -9.02005 -8.85849 -8.54324 -7.10387 -5.87181 -3.17469 0.24928 0.62407 1.66053 1.83443 2.07060 3.35973 3.36714 3.42896 3.45071 3.49377 3.59072 3.98995 4.00383 4.23500 4.46841 4.50858 4.51405 4.61681 4.71249 4.91354 5.04942 5.08664 5.25329 5.32248 5.34960 5.42957 5.53715 5.58280 5.62242 5.72804 5.83133 5.96316 6.03363 6.05686 6.06113 6.19219 6.37010 6.43724 6.59780 6.63281 6.72498 6.87395 6.98649 7.20517 7.25866 7.49364 7.63151 7.91348 8.29773 8.53246 9.42456 9.96018 10.32276 11.34061 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.002449 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.798968 B =11429.632795 C =13056.456314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.191 3.809 11 H 0.058 0.942 12 C 0.121 3.879 13 N -0.705 5.705 14 C 0.590 3.410 15 O -0.560 6.560 16 C -0.264 4.264 17 C 0.105 3.895 18 N -0.288 5.288 19 N -0.323 5.323 20 C 0.208 3.792 21 C -0.197 4.197 22 C 0.128 3.872 23 N -0.495 5.495 24 C 0.124 3.876 25 C -0.173 4.173 26 C 0.122 3.878 27 C -0.177 4.177 28 C -0.163 4.163 29 C -0.176 4.176 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.409 0.591 35 H 0.205 0.795 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.193 0.807 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 -12.008 -12.995 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.080 3.920 11 H 0.076 0.924 12 C -0.003 4.003 13 N -0.355 5.355 14 C 0.376 3.624 15 O -0.440 6.440 16 C -0.278 4.278 17 C -0.084 4.084 18 N -0.104 5.104 19 N -0.097 5.097 20 C 0.107 3.893 21 C -0.220 4.220 22 C -0.029 4.029 23 N -0.204 5.204 24 C -0.032 4.032 25 C -0.195 4.195 26 C -0.023 4.023 27 C -0.199 4.199 28 C -0.200 4.200 29 C -0.213 4.213 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.246 0.754 35 H 0.221 0.779 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.169 0.831 40 H 0.209 0.791 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.772 -12.201 -14.529 19.343 hybrid contribution 0.988 1.263 1.674 2.319 sum -2.784 -10.937 -12.854 17.106 Atomic orbital electron populations 1.69669 1.04995 1.25637 1.57140 1.24708 0.95401 0.97527 1.02777 0.86216 0.78863 0.84470 0.77199 1.20598 1.21933 1.21957 1.19198 0.90922 0.83755 1.43159 0.91003 1.42488 1.05861 0.99476 1.88108 1.20004 0.94111 0.86066 0.91777 0.92429 1.21595 0.98825 0.97441 0.82463 1.45734 1.50300 1.21586 1.17884 1.17085 0.78232 0.83966 0.83083 1.90750 1.58147 1.22730 1.72348 1.20487 1.10624 0.97759 0.98880 1.24504 0.96342 0.97083 0.90498 1.77305 1.12381 1.00437 1.20310 1.45601 1.37685 1.14300 1.12079 1.17832 0.91610 0.94203 0.85643 1.21954 1.01544 0.96149 1.02369 1.22674 0.94132 0.98638 0.87477 1.67717 1.20427 1.04060 1.28238 1.22767 0.90991 0.92614 0.96875 1.21996 1.02516 1.01846 0.93092 1.23009 0.96190 0.97833 0.85268 1.23065 1.05967 0.95360 0.95528 1.22915 0.96709 1.03525 0.96861 1.22857 0.93486 1.01901 1.03052 0.93497 0.77899 0.91534 0.91706 0.75396 0.77893 0.83722 0.81597 0.81664 0.83057 0.79056 0.89605 0.86336 0.91306 0.91034 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.59 13.06 55.49 0.72 -24.86 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 20.90 29.55 -169.99 -5.02 15.87 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -5.74 8.16 -15.06 -0.12 -5.86 16 8 H 0.07 1.72 6.90 -52.49 -0.36 1.35 16 9 N -0.72 -15.23 3.08 -53.43 -0.16 -15.39 16 10 C 0.19 3.34 2.86 -67.93 -0.19 3.15 16 11 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 12 C 0.12 1.95 5.21 -4.04 -0.02 1.92 16 13 N -0.70 -11.03 5.38 -61.38 -0.33 -11.36 16 14 C 0.59 9.46 7.81 -12.53 -0.10 9.37 16 15 O -0.56 -10.38 16.90 5.26 0.09 -10.29 16 16 C -0.26 -3.66 6.13 -105.05 -0.64 -4.31 16 17 C 0.11 1.40 11.50 -16.95 -0.19 1.20 16 18 N -0.29 -3.92 11.87 30.88 0.37 -3.55 16 19 N -0.32 -3.94 3.76 -10.03 -0.04 -3.98 16 20 C 0.21 2.16 6.73 -83.35 -0.56 1.60 16 21 C -0.20 -1.59 9.52 -39.26 -0.37 -1.96 16 22 C 0.13 0.96 11.17 -17.59 -0.20 0.77 16 23 N -0.49 -4.53 10.36 -13.33 -0.14 -4.67 16 24 C 0.12 1.02 11.18 -17.59 -0.20 0.82 16 25 C -0.17 -1.63 9.73 -39.26 -0.38 -2.01 16 26 C 0.12 1.48 10.64 -16.42 -0.17 1.30 16 27 C -0.18 -2.98 5.71 -90.62 -0.52 -3.49 16 28 C -0.16 -2.97 9.74 -26.69 -0.26 -3.23 16 29 C -0.18 -3.05 9.87 -26.69 -0.26 -3.31 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 9.10 7.80 -40.82 -0.32 8.79 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.41 6.32 7.09 -40.82 -0.29 6.03 16 35 H 0.20 2.35 7.50 -52.49 -0.39 1.96 16 36 H 0.15 0.85 6.85 -52.49 -0.36 0.49 16 37 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.15 1.40 7.78 -52.48 -0.41 1.00 16 40 H 0.19 1.78 7.09 -52.49 -0.37 1.41 16 41 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 42 H 0.12 2.59 6.68 -51.93 -0.35 2.24 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.10 1.99 6.22 -51.93 -0.32 1.67 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -30.63 383.83 -8.71 -39.34 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -5.69 Total: 17.43 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -4.30 Total: -4.33 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 0.42 Total: -63.81 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.63 -8.71 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317025001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.427 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds