Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99660 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00452 * 180.02562 * 7 2 1 10 10 C 1.80990 * 100.00278 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47384 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99695 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99952 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99670 * 179.97438 * 13 11 10 15 15 H 1.09001 * 112.85354 * 25.33121 * 14 13 11 16 16 C 1.53787 * 113.61468 * 156.52570 * 14 13 11 17 17 C 1.53782 * 87.08047 * 89.11458 * 16 14 13 18 18 H 1.09000 * 113.61307 * 270.88627 * 17 16 14 19 19 N 1.46903 * 113.61400 * 140.06291 * 17 16 14 20 20 C 1.46902 * 110.99636 * 154.99981 * 19 17 16 21 21 C 1.52999 * 109.46856 * 180.02562 * 20 19 17 22 22 N 1.46496 * 109.47559 * 179.97438 * 21 20 19 23 23 C 1.46763 * 124.35196 * 269.72937 * 22 21 20 24 24 C 1.54658 * 105.38316 * 162.84669 * 23 22 21 25 25 C 1.54626 * 101.68510 * 25.76858 * 24 23 22 26 26 C 1.34419 * 124.34737 * 90.02110 * 22 21 20 27 27 O 1.21281 * 124.94717 * 0.38822 * 26 22 21 28 28 C 1.53781 * 113.61183 * 254.13170 * 14 13 11 29 29 H 0.96997 * 119.99773 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47475 * 300.00386 * 10 9 7 31 31 H 1.08999 * 109.47457 * 59.99863 * 10 9 7 32 32 H 0.96994 * 120.00661 * 359.97438 * 13 11 10 33 33 H 1.08995 * 113.61382 * 203.66404 * 16 14 13 34 34 H 1.08998 * 113.61020 * 334.48029 * 16 14 13 35 35 H 1.00906 * 110.99475 * 31.05090 * 19 17 16 36 36 H 1.09000 * 109.47094 * 299.99702 * 20 19 17 37 37 H 1.08992 * 109.47070 * 60.00553 * 20 19 17 38 38 H 1.09000 * 109.47146 * 300.00294 * 21 20 19 39 39 H 1.09003 * 109.47409 * 59.99600 * 21 20 19 40 40 H 1.09003 * 110.24205 * 281.98285 * 23 22 21 41 41 H 1.09005 * 110.24534 * 43.97833 * 23 22 21 42 42 H 1.08999 * 111.19391 * 267.59063 * 24 23 22 43 43 H 1.09001 * 110.85295 * 143.79182 * 24 23 22 44 44 H 1.09000 * 110.48489 * 216.30966 * 25 24 23 45 45 H 1.09000 * 110.48855 * 93.66482 * 25 24 23 46 46 H 1.08997 * 113.61695 * 25.43685 * 28 14 13 47 47 H 1.09001 * 113.60962 * 156.33782 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2020 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5732 -3.2325 0.0010 12 8 6.3441 -2.2962 0.0015 13 7 6.0457 -4.4946 0.0005 14 6 7.4908 -4.7356 0.0011 15 1 8.0575 -3.9101 0.4316 16 6 7.8855 -6.1122 0.5617 17 6 7.7426 -6.6496 -0.8720 18 1 6.7363 -6.9935 -1.1111 19 7 8.7805 -7.6210 -1.2425 20 6 8.3082 -8.5153 -2.3079 21 6 9.4136 -9.5108 -2.6655 22 7 8.9426 -10.4032 -3.7275 23 6 8.2581 -11.6801 -3.4933 24 6 7.5782 -12.0336 -4.8366 25 6 8.4760 -11.2849 -5.8486 26 6 9.0867 -10.1603 -5.0417 27 8 9.6271 -9.1817 -5.5122 28 6 8.0356 -5.2162 -1.3543 29 1 -0.4850 0.8400 -0.0004 30 1 3.6434 -3.4318 0.8895 31 1 3.6441 -3.4313 -0.8903 32 1 5.4292 -5.2434 -0.0002 33 1 8.9058 -6.1520 0.9433 34 1 7.1565 -6.5250 1.2590 35 1 9.0869 -8.1472 -0.4380 36 1 7.4284 -9.0585 -1.9629 37 1 8.0499 -7.9270 -3.1883 38 1 10.2937 -8.9680 -3.0103 39 1 9.6717 -10.0991 -1.7849 40 1 8.9794 -12.4497 -3.2183 41 1 7.5081 -11.5680 -2.7103 42 1 6.5551 -11.6590 -4.8711 43 1 7.6038 -13.1089 -5.0134 44 1 7.8773 -10.8855 -6.6672 45 1 9.2537 -11.9461 -6.2308 46 1 7.4271 -4.9069 -2.2040 47 1 9.0969 -5.0116 -1.4956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317070781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = -47.557510 kcal Electronic energy + Delta-G solvation = -26084.817000 eV Core-core repulsion = 22201.286359 eV Total energy + Delta-G solvation = -3883.530641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82533 -40.19945 -38.35458 -36.89969 -35.68273 -33.41790 -32.44330 -32.22138 -29.32806 -28.10951 -28.02465 -25.95664 -25.62417 -23.93154 -22.76184 -22.40921 -20.93922 -19.91489 -19.32736 -17.88420 -17.32910 -17.16861 -16.60906 -16.18977 -16.00074 -15.89592 -15.33789 -15.04376 -14.96309 -14.76736 -14.26966 -14.25931 -13.81199 -13.79150 -13.58761 -13.28829 -13.09928 -12.87718 -12.79303 -12.61511 -12.39020 -12.19620 -12.03376 -11.81924 -11.64221 -11.51168 -11.26356 -11.00706 -10.78310 -10.69980 -10.56606 -10.20393 -9.85728 -9.53528 -9.24989 -9.03041 -8.98464 -8.81360 -8.50335 -6.91998 -6.29216 -4.00963 2.14971 2.44550 2.74744 2.94203 3.29060 3.33983 3.51249 3.64026 3.81999 3.84929 3.90204 4.18722 4.23748 4.32807 4.33378 4.44233 4.54587 4.61690 4.72337 4.77474 4.80250 4.85602 4.94431 4.97797 5.09933 5.14018 5.23205 5.24081 5.29068 5.36925 5.38855 5.47024 5.52539 5.64340 5.74602 5.81240 5.92806 5.96066 6.00215 6.04926 6.51775 6.62532 6.72016 6.93008 7.59541 7.73708 7.93818 8.40983 8.48489 9.17033 10.79971 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.001678 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.566885 B =16680.210142 C =17411.060473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.721 5.721 14 C 0.124 3.876 15 H 0.105 0.895 16 C -0.148 4.148 17 C 0.060 3.940 18 H 0.073 0.927 19 N -0.673 5.673 20 C 0.044 3.956 21 C 0.128 3.872 22 N -0.621 5.621 23 C 0.101 3.899 24 C -0.133 4.133 25 C -0.156 4.156 26 C 0.514 3.486 27 O -0.525 6.525 28 C -0.137 4.137 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.398 0.602 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.340 0.660 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.069 0.931 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.996 -30.162 -4.326 35.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.374 5.374 14 C 0.017 3.983 15 H 0.123 0.877 16 C -0.186 4.186 17 C -0.050 4.050 18 H 0.090 0.910 19 N -0.304 5.304 20 C -0.087 4.087 21 C 0.005 3.995 22 N -0.356 5.356 23 C -0.022 4.022 24 C -0.171 4.171 25 C -0.196 4.196 26 C 0.302 3.698 27 O -0.401 6.401 28 C -0.176 4.176 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.232 0.768 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.088 0.912 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.739 -27.488 -4.952 34.202 hybrid contribution -1.872 -1.421 0.568 2.418 sum 17.866 -28.909 -4.385 34.266 Atomic orbital electron populations 1.69939 1.05912 1.27772 1.48068 1.24714 0.94461 0.98983 0.93160 0.86732 0.81921 0.83247 0.79940 1.19200 1.19923 1.15897 1.22318 0.88294 0.97533 1.58806 0.89409 1.84805 1.09240 0.99951 1.97419 1.23281 0.93954 1.04489 1.05777 1.20292 0.90559 0.82274 0.74956 1.90703 1.58734 1.42126 1.47462 1.45683 1.06453 1.08008 1.77248 1.21623 0.82112 0.97459 0.97063 0.87674 1.23594 1.03020 0.96097 0.95929 1.23174 0.93471 0.92609 0.95718 0.90953 1.60495 1.38301 1.19028 1.12605 1.22360 0.96003 0.94173 0.96148 1.21299 0.97496 0.91013 0.89656 1.48254 1.59335 1.21535 1.06510 1.22147 0.96362 0.85117 0.98602 1.22636 0.99494 1.01685 0.93243 1.22349 1.00874 0.97276 0.99145 1.20986 0.78782 0.87081 0.82963 1.90769 1.43886 1.30937 1.74507 1.23585 1.02463 0.93956 0.97633 0.91941 0.88507 0.88485 0.76821 0.88087 0.90844 0.84114 0.95077 0.90466 0.88955 0.90472 0.90890 0.90378 0.89799 0.89036 0.87900 0.87765 0.91216 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.92 27.74 -169.99 -4.71 17.21 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 10 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 11 C 0.53 9.47 7.85 -10.99 -0.09 9.38 16 12 O -0.52 -11.22 15.48 5.55 0.09 -11.13 16 13 N -0.72 -9.08 5.26 -53.01 -0.28 -9.36 16 14 C 0.12 1.39 4.30 -67.11 -0.29 1.10 16 15 H 0.11 1.38 7.50 -51.93 -0.39 0.99 16 16 C -0.15 -1.12 7.39 -25.91 -0.19 -1.31 16 17 C 0.06 0.48 4.03 -66.75 -0.27 0.22 16 18 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 19 N -0.67 -4.81 6.57 -105.71 -0.69 -5.51 16 20 C 0.04 0.32 5.85 -3.82 -0.02 0.29 16 21 C 0.13 0.82 6.19 -4.04 -0.03 0.80 16 22 N -0.62 -4.03 2.93 -172.30 -0.51 -4.54 16 23 C 0.10 0.31 7.36 -3.03 -0.02 0.29 16 24 C -0.13 -0.31 7.19 -25.00 -0.18 -0.49 16 25 C -0.16 -0.73 6.86 -26.74 -0.18 -0.92 16 26 C 0.51 4.60 8.02 -10.86 -0.09 4.51 16 27 O -0.53 -7.26 17.59 5.56 0.10 -7.16 16 28 C -0.14 -1.45 7.70 -25.77 -0.20 -1.65 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 32 H 0.40 3.88 8.70 -40.82 -0.36 3.53 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.34 1.78 8.55 -39.29 -0.34 1.45 16 36 H 0.03 0.20 8.13 -51.93 -0.42 -0.22 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.79 7.92 -51.93 -0.41 0.38 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 41 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -37.20 402.47 -10.10 -47.30 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.82 Total: 0.58 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.12 Total: -2.04 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.70 Total: -45.25 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.18 Total: -18.29 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.20 -10.10 -47.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317070781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.256 kcal (2) G-P(sol) polarization free energy of solvation -37.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds