Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.88297 * 54.29798 * 11 10 9 13 13 C 1.55155 * 111.00636 * 178.17734 * 11 10 9 14 14 C 1.54370 * 102.92232 * 153.54921 * 13 11 10 15 15 N 1.47024 * 107.28431 * 337.85920 * 14 13 11 16 16 C 1.34779 * 125.64243 * 178.93995 * 15 14 13 17 17 O 1.21608 * 119.99411 * 179.97438 * 16 15 14 18 18 C 1.47419 * 120.00478 * 359.96483 * 16 15 14 19 19 C 1.41367 * 126.40428 * 359.68604 * 18 16 15 20 20 N 1.30453 * 108.07256 * 179.81315 * 19 18 16 21 21 N 1.39937 * 108.91638 * 0.45207 * 20 19 18 22 22 C 1.39908 * 125.77719 * 179.69471 * 21 20 19 23 23 C 1.39327 * 120.85714 * 179.74504 * 22 21 20 24 24 C 1.38008 * 119.08069 * 179.72810 * 23 22 21 25 25 N 1.31942 * 120.83136 * 0.54881 * 24 23 22 26 26 C 1.31942 * 121.88696 * 359.71914 * 25 24 23 27 27 C 1.38009 * 120.82925 * 0.02562 * 26 25 24 28 28 C 1.34600 * 108.44685 * 359.70362 * 21 20 19 29 29 C 1.47418 * 108.70424 * 358.91287 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09003 * 110.71924 * 271.94020 * 13 11 10 35 35 H 1.09002 * 110.71738 * 35.21438 * 13 11 10 36 36 H 1.09004 * 109.89866 * 218.42730 * 14 13 11 37 37 H 1.08994 * 109.97701 * 97.34322 * 14 13 11 38 38 H 1.08000 * 125.96370 * 0.02562 * 19 18 16 39 39 H 1.07997 * 120.46111 * 359.97438 * 23 22 21 40 40 H 1.08003 * 119.58751 * 180.29228 * 24 23 22 41 41 H 1.07996 * 119.58731 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.45961 * 179.97438 * 27 26 25 43 43 H 1.08002 * 126.31429 * 180.02562 * 28 21 20 44 44 H 1.09006 * 110.36640 * 265.28748 * 29 15 14 45 45 H 1.08998 * 110.46083 * 143.01279 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3598 -4.7286 -0.8295 13 6 1.8027 -6.1832 -0.0483 14 6 0.7990 -7.1428 0.6260 15 7 -0.0960 -6.3249 1.4577 16 6 -1.1250 -6.7884 2.1945 17 8 -1.8012 -6.0168 2.8475 18 6 -1.4309 -8.2304 2.2088 19 6 -0.7421 -9.2412 1.5001 20 7 -1.3078 -10.3844 1.7737 21 7 -2.3767 -10.1637 2.6494 22 6 -3.2284 -11.1467 3.1647 23 6 -4.2616 -10.8113 4.0371 24 6 -5.0835 -11.8098 4.5190 25 7 -4.8933 -13.0685 4.1718 26 6 -3.9230 -13.4266 3.3527 27 6 -3.0614 -12.4873 2.8235 28 6 -2.4470 -8.8454 2.9118 29 6 0.3189 -4.9142 1.3527 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 1.9925 -6.4844 -1.0786 35 1 2.7325 -6.1373 0.5187 36 1 1.3329 -7.8595 1.2501 37 1 0.2210 -7.6704 -0.1326 38 1 0.1066 -9.0933 0.8488 39 1 -4.4197 -9.7836 4.3291 40 1 -5.8899 -11.5584 5.1920 41 1 -3.8014 -14.4678 3.0930 42 1 -2.2689 -12.7871 2.1538 43 1 -3.1658 -8.3585 3.5543 44 1 0.9884 -4.6537 2.1725 45 1 -0.5526 -4.2597 1.3529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317339720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = 112.044549 kcal Electronic energy + Delta-G solvation = -27938.560557 eV Core-core repulsion = 23958.799580 eV Total energy + Delta-G solvation = -3979.760977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31426 -40.55461 -39.73255 -37.60155 -35.13988 -34.79340 -32.50880 -32.11068 -30.97452 -30.66788 -30.28712 -28.68110 -25.91764 -24.54191 -24.44309 -23.74742 -22.46220 -21.84801 -21.42936 -20.16470 -19.88643 -18.77306 -17.31474 -17.06481 -16.56444 -16.49793 -16.16926 -16.05672 -15.82402 -15.29082 -14.73417 -14.64424 -14.41311 -14.34743 -14.19959 -13.84502 -13.65392 -13.47861 -13.20409 -12.98545 -12.65669 -12.42980 -12.18064 -11.86684 -11.57596 -11.48949 -11.05876 -10.87063 -10.70057 -10.57598 -10.42809 -10.23879 -9.98281 -9.95808 -9.88023 -9.86547 -9.16157 -9.04769 -8.88418 -8.63448 -7.00772 -6.09065 -3.09489 0.02987 0.45043 1.40194 1.56683 1.75085 2.88708 3.17487 3.24450 3.52630 3.56478 3.70665 3.74076 3.83418 4.02639 4.23315 4.29580 4.39812 4.47941 4.52395 4.64670 4.73632 4.80877 4.85002 4.85639 5.01098 5.10959 5.14434 5.21097 5.32507 5.38470 5.48130 5.62776 5.77723 5.80352 5.86463 5.88151 5.89597 5.92386 6.15609 6.22829 6.34173 6.34417 6.59480 6.71891 6.90658 7.32875 7.47282 7.80783 8.12590 8.76896 9.23275 10.09687 10.23867 11.39317 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.001809 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.814851 B =15477.710885 C =16287.006571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.045 4.045 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.334 4.334 8 H 0.065 0.935 9 N -0.744 5.744 10 C 0.171 3.829 11 C -0.107 4.107 12 H 0.084 0.916 13 C -0.125 4.125 14 C 0.092 3.908 15 N -0.611 5.611 16 C 0.605 3.395 17 O -0.541 6.541 18 C -0.265 4.265 19 C 0.084 3.916 20 N -0.288 5.288 21 N -0.320 5.320 22 C 0.203 3.797 23 C -0.195 4.195 24 C 0.130 3.870 25 N -0.492 5.492 26 C 0.125 3.875 27 C -0.172 4.172 28 C 0.129 3.871 29 C 0.118 3.882 30 H 0.255 0.745 31 H 0.367 0.633 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.210 0.790 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.151 0.849 43 H 0.195 0.805 44 H 0.073 0.927 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 -28.891 5.135 29.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.243 4.243 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.103 0.897 13 C -0.164 4.164 14 C -0.031 4.031 15 N -0.345 5.345 16 C 0.394 3.606 17 O -0.419 6.419 18 C -0.279 4.279 19 C -0.105 4.105 20 N -0.105 5.105 21 N -0.093 5.093 22 C 0.103 3.897 23 C -0.218 4.218 24 C -0.027 4.027 25 N -0.202 5.202 26 C -0.032 4.032 27 C -0.194 4.194 28 C -0.017 4.017 29 C -0.003 4.003 30 H 0.066 0.934 31 H 0.201 0.799 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.226 0.774 39 H 0.164 0.836 40 H 0.186 0.814 41 H 0.184 0.816 42 H 0.169 0.831 43 H 0.212 0.788 44 H 0.091 0.909 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.628 -28.783 5.688 29.874 hybrid contribution 0.617 -0.138 -0.295 0.698 sum -5.010 -28.921 5.392 29.843 Atomic orbital electron populations 1.70882 1.06038 1.28463 1.53365 1.25793 0.97060 1.01037 1.00367 0.83236 0.74203 0.75604 0.75820 1.21034 1.22267 1.22278 1.20009 0.92008 0.85796 1.48706 0.91742 1.42368 1.04908 1.00917 1.90797 1.20520 0.92601 0.84274 0.98347 1.22616 0.98203 0.94951 0.96930 0.89724 1.22682 0.98001 0.94311 1.01386 1.22391 0.92026 0.94728 0.93916 1.48270 1.30177 1.09606 1.46404 1.16723 0.79267 0.85741 0.78916 1.90824 1.49851 1.57840 1.43420 1.20364 1.03091 0.95058 1.09379 1.25056 0.99181 0.88730 0.97543 1.77285 0.99922 1.23494 1.09750 1.45600 1.23648 1.04696 1.35348 1.17835 0.89658 0.88017 0.94221 1.21987 0.96603 1.02956 1.00236 1.22722 0.96913 0.87059 0.96043 1.67738 1.19754 1.19745 1.12930 1.22793 0.89060 1.00122 0.91233 1.21976 1.02987 0.90944 1.03453 1.23062 0.98239 0.82916 0.97473 1.22334 0.99796 0.80584 0.97627 0.93364 0.79947 0.95680 0.95905 0.89704 0.90042 0.91057 0.91045 0.77433 0.83619 0.81422 0.81578 0.83107 0.78790 0.90868 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.44 13.70 55.49 0.76 -28.68 16 2 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 3 Si 1.08 26.03 29.92 -169.99 -5.09 20.95 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.33 -9.44 9.99 -15.06 -0.15 -9.59 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.74 -18.51 5.49 -59.91 -0.33 -18.84 16 10 C 0.17 3.25 5.71 -4.05 -0.02 3.23 16 11 C -0.11 -1.59 3.07 -88.48 -0.27 -1.86 16 12 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.13 -1.28 6.42 -24.87 -0.16 -1.44 16 14 C 0.09 0.87 4.99 -3.04 -0.02 0.85 16 15 N -0.61 -8.25 3.33 -171.76 -0.57 -8.82 16 16 C 0.60 8.90 7.85 -12.52 -0.10 8.80 16 17 O -0.54 -10.01 17.16 5.27 0.09 -9.91 16 18 C -0.27 -3.07 6.09 -105.05 -0.64 -3.71 16 19 C 0.08 0.81 10.44 -16.95 -0.18 0.63 16 20 N -0.29 -3.00 11.87 30.88 0.37 -2.63 16 21 N -0.32 -3.16 3.76 -10.03 -0.04 -3.19 16 22 C 0.20 1.71 6.73 -83.36 -0.56 1.15 16 23 C -0.20 -1.27 9.52 -39.26 -0.37 -1.64 16 24 C 0.13 0.80 11.17 -17.59 -0.20 0.60 16 25 N -0.49 -3.79 10.36 -13.32 -0.14 -3.93 16 26 C 0.12 0.80 11.18 -17.59 -0.20 0.60 16 27 C -0.17 -1.26 9.73 -39.26 -0.38 -1.64 16 28 C 0.13 1.31 10.64 -16.42 -0.17 1.13 16 29 C 0.12 1.88 6.23 -2.54 -0.02 1.87 16 30 H 0.26 7.87 6.77 -40.82 -0.28 7.59 16 31 H 0.37 9.42 6.46 -40.82 -0.26 9.16 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.44 8.03 -51.93 -0.42 0.03 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 36 H 0.07 0.53 7.02 -51.93 -0.36 0.16 16 37 H 0.07 0.55 6.80 -51.93 -0.35 0.19 16 38 H 0.21 1.41 4.47 -52.49 -0.23 1.17 16 39 H 0.15 0.66 6.85 -52.49 -0.36 0.30 16 40 H 0.17 0.56 8.06 -52.48 -0.42 0.13 16 41 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.15 1.02 7.78 -52.49 -0.41 0.61 16 43 H 0.20 1.53 7.09 -52.49 -0.37 1.16 16 44 H 0.07 1.23 7.96 -51.93 -0.41 0.82 16 45 H 0.08 1.53 8.04 -51.93 -0.42 1.12 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -37.14 375.83 -8.43 -45.57 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.62 Total: 6.26 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -3.53 Total: -2.43 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: 0.05 Total: -66.09 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.09 Total: 20.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.14 -8.43 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317339720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.615 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds