Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.88297 * 54.29798 * 11 10 9 13 13 C 1.55155 * 111.00636 * 178.17734 * 11 10 9 14 14 C 1.54370 * 102.92232 * 153.54921 * 13 11 10 15 15 N 1.47024 * 107.28431 * 337.85920 * 14 13 11 16 16 C 1.34779 * 125.64243 * 178.93995 * 15 14 13 17 17 O 1.21608 * 119.99411 * 179.97438 * 16 15 14 18 18 C 1.47419 * 120.00478 * 359.96483 * 16 15 14 19 19 C 1.41367 * 126.40428 * 359.68604 * 18 16 15 20 20 N 1.30453 * 108.07256 * 179.81315 * 19 18 16 21 21 N 1.39937 * 108.91638 * 0.45207 * 20 19 18 22 22 C 1.39908 * 125.77719 * 179.69471 * 21 20 19 23 23 C 1.39327 * 120.85714 * 179.74504 * 22 21 20 24 24 C 1.38008 * 119.08069 * 179.72810 * 23 22 21 25 25 N 1.31942 * 120.83136 * 0.54881 * 24 23 22 26 26 C 1.31942 * 121.88696 * 359.71914 * 25 24 23 27 27 C 1.38009 * 120.82925 * 0.02562 * 26 25 24 28 28 C 1.34600 * 108.44685 * 359.70362 * 21 20 19 29 29 C 1.47418 * 108.70424 * 358.91287 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09003 * 110.71924 * 271.94020 * 13 11 10 35 35 H 1.09002 * 110.71738 * 35.21438 * 13 11 10 36 36 H 1.09004 * 109.89866 * 218.42730 * 14 13 11 37 37 H 1.08994 * 109.97701 * 97.34322 * 14 13 11 38 38 H 1.08000 * 125.96370 * 0.02562 * 19 18 16 39 39 H 1.07997 * 120.46111 * 359.97438 * 23 22 21 40 40 H 1.08003 * 119.58751 * 180.29228 * 24 23 22 41 41 H 1.07996 * 119.58731 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.45961 * 179.97438 * 27 26 25 43 43 H 1.08002 * 126.31429 * 180.02562 * 28 21 20 44 44 H 1.09006 * 110.36640 * 265.28748 * 29 15 14 45 45 H 1.08998 * 110.46083 * 143.01279 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3598 -4.7286 -0.8295 13 6 1.8027 -6.1832 -0.0483 14 6 0.7990 -7.1428 0.6260 15 7 -0.0960 -6.3249 1.4577 16 6 -1.1250 -6.7884 2.1945 17 8 -1.8012 -6.0168 2.8475 18 6 -1.4309 -8.2304 2.2088 19 6 -0.7421 -9.2412 1.5001 20 7 -1.3078 -10.3844 1.7737 21 7 -2.3767 -10.1637 2.6494 22 6 -3.2284 -11.1467 3.1647 23 6 -4.2616 -10.8113 4.0371 24 6 -5.0835 -11.8098 4.5190 25 7 -4.8933 -13.0685 4.1718 26 6 -3.9230 -13.4266 3.3527 27 6 -3.0614 -12.4873 2.8235 28 6 -2.4470 -8.8454 2.9118 29 6 0.3189 -4.9142 1.3527 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 1.9925 -6.4844 -1.0786 35 1 2.7325 -6.1373 0.5187 36 1 1.3329 -7.8595 1.2501 37 1 0.2210 -7.6704 -0.1326 38 1 0.1066 -9.0933 0.8488 39 1 -4.4197 -9.7836 4.3291 40 1 -5.8899 -11.5584 5.1920 41 1 -3.8014 -14.4678 3.0930 42 1 -2.2689 -12.7871 2.1538 43 1 -3.1658 -8.3585 3.5543 44 1 0.9884 -4.6537 2.1725 45 1 -0.5526 -4.2597 1.3529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317339720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = 86.377949 kcal Electronic energy + Delta-G solvation = -27939.673545 eV Core-core repulsion = 23958.799580 eV Total energy + Delta-G solvation = -3980.873964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.05458 -41.24486 -40.67250 -38.82517 -36.77182 -35.63067 -34.06454 -32.64890 -32.06072 -31.63859 -31.23195 -29.92872 -27.26868 -25.68077 -25.22041 -24.84388 -23.92402 -22.61599 -22.19880 -21.40765 -20.77825 -19.65347 -19.22188 -17.95064 -17.61023 -17.18020 -16.91262 -16.82390 -16.69865 -16.31433 -16.11330 -15.84323 -15.58320 -15.29634 -15.07989 -14.86317 -14.81239 -14.68807 -14.21766 -14.13644 -13.92750 -13.42136 -13.02430 -12.98226 -12.76698 -12.55818 -12.33102 -12.18335 -12.14261 -11.96035 -11.84925 -11.66170 -11.23100 -11.15174 -10.92165 -10.72400 -10.62407 -10.35102 -9.88100 -9.63386 -9.10867 -8.39686 -5.33605 -0.61214 -0.02317 0.60779 0.87752 1.01753 1.58701 1.69296 1.85245 1.85458 2.20277 2.69217 2.72306 3.02973 3.33889 3.39264 3.42406 3.45210 3.55944 3.67155 3.72940 3.78022 3.82782 3.97095 4.03934 4.09320 4.22732 4.29653 4.35674 4.39714 4.50005 4.58491 4.61621 4.73126 4.73691 4.79704 4.82589 4.94660 5.01355 5.10993 5.17556 5.23273 5.36690 5.38449 5.59262 5.69396 6.17119 6.42922 6.48538 6.84308 7.01667 7.09386 7.99826 8.10798 9.12070 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.001809 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.814851 B =15477.710885 C =16287.006571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.108 4.108 3 Si 1.129 2.871 4 H -0.295 1.295 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.071 0.929 9 N -0.760 5.760 10 C 0.168 3.832 11 C -0.098 4.098 12 H 0.077 0.923 13 C -0.112 4.112 14 C 0.087 3.913 15 N -0.611 5.611 16 C 0.600 3.400 17 O -0.594 6.594 18 C -0.286 4.286 19 C 0.095 3.905 20 N -0.302 5.302 21 N -0.318 5.318 22 C 0.176 3.824 23 C -0.194 4.194 24 C 0.127 3.873 25 N -0.512 5.512 26 C 0.124 3.876 27 C -0.175 4.175 28 C 0.134 3.866 29 C 0.122 3.878 30 H 0.242 0.758 31 H 0.358 0.642 32 H 0.034 0.966 33 H 0.024 0.976 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.237 0.763 39 H 0.163 0.837 40 H 0.195 0.805 41 H 0.192 0.808 42 H 0.154 0.846 43 H 0.210 0.790 44 H 0.059 0.941 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 -31.353 4.709 31.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.299 4.299 3 Si 0.954 3.046 4 H -0.222 1.222 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.089 0.911 9 N -0.404 5.404 10 C 0.042 3.958 11 C -0.118 4.118 12 H 0.096 0.904 13 C -0.150 4.150 14 C -0.034 4.034 15 N -0.342 5.342 16 C 0.391 3.609 17 O -0.476 6.476 18 C -0.300 4.300 19 C -0.093 4.093 20 N -0.119 5.119 21 N -0.090 5.090 22 C 0.076 3.924 23 C -0.216 4.216 24 C -0.029 4.029 25 N -0.222 5.222 26 C -0.032 4.032 27 C -0.197 4.197 28 C -0.013 4.013 29 C -0.001 4.001 30 H 0.052 0.948 31 H 0.190 0.810 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.253 0.747 39 H 0.180 0.820 40 H 0.212 0.788 41 H 0.209 0.791 42 H 0.172 0.828 43 H 0.227 0.773 44 H 0.078 0.922 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.242 -31.348 5.238 32.065 hybrid contribution 0.177 0.498 -0.114 0.540 sum -4.065 -30.850 5.124 31.536 Atomic orbital electron populations 1.71000 1.07309 1.27763 1.56397 1.27280 0.97093 1.04919 1.00624 0.82615 0.73338 0.71416 0.77247 1.22152 1.20390 1.20001 1.20423 0.92523 0.87109 1.46513 0.91143 1.42646 1.04790 1.02262 1.90742 1.20711 0.93310 0.83414 0.98377 1.22428 0.97554 0.96169 0.95659 0.90435 1.22713 0.97881 0.90835 1.03565 1.22745 0.91680 0.94546 0.94471 1.48304 1.30478 1.08899 1.46557 1.17188 0.78768 0.86773 0.78132 1.90786 1.51723 1.59368 1.45732 1.20119 1.04844 0.93478 1.11582 1.25412 0.99334 0.87559 0.97038 1.77262 1.00379 1.23910 1.10302 1.45702 1.23575 1.04745 1.34980 1.18195 0.90431 0.88258 0.95471 1.22235 0.95882 1.04009 0.99465 1.23191 0.97264 0.86533 0.95936 1.67797 1.20324 1.20562 1.13481 1.23203 0.88323 1.01186 0.90514 1.22096 1.03270 0.90757 1.03553 1.23343 0.97939 0.83183 0.96885 1.22058 0.98027 0.81915 0.98077 0.94788 0.80998 0.94779 0.95799 0.86809 0.89024 0.87966 0.88426 0.74720 0.81983 0.78840 0.79080 0.82826 0.77349 0.92226 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.89 13.70 21.65 0.30 -62.60 16 2 C -0.11 -6.41 5.50 84.86 0.47 -5.95 16 3 Si 1.13 52.57 29.92 68.60 2.05 54.62 16 4 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.33 -19.02 9.99 84.03 0.84 -18.18 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.76 -38.63 5.49 -343.47 -1.89 -40.52 16 10 C 0.17 6.35 5.71 86.38 0.49 6.84 16 11 C -0.10 -2.85 3.07 -9.40 -0.03 -2.88 16 12 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 13 C -0.11 -1.92 6.42 31.80 0.20 -1.72 16 14 C 0.09 1.35 4.99 86.74 0.43 1.78 16 15 N -0.61 -16.19 3.33 -815.59 -2.71 -18.90 16 16 C 0.60 17.89 7.85 86.66 0.68 18.57 16 17 O -0.59 -23.14 17.16 -4.06 -0.07 -23.21 16 18 C -0.29 -6.37 6.09 -20.14 -0.12 -6.49 16 19 C 0.10 1.61 10.44 85.67 0.89 2.50 16 20 N -0.30 -5.71 11.87 -56.22 -0.67 -6.38 16 21 N -0.32 -5.87 3.76 -185.66 -0.70 -6.56 16 22 C 0.18 2.74 6.73 38.38 0.26 3.00 16 23 C -0.19 -2.24 9.52 22.48 0.21 -2.03 16 24 C 0.13 1.35 11.17 84.62 0.95 2.30 16 25 N -0.51 -7.04 10.36 -196.05 -2.03 -9.07 16 26 C 0.12 1.39 11.18 84.62 0.95 2.34 16 27 C -0.18 -2.32 9.73 22.48 0.22 -2.11 16 28 C 0.13 2.61 10.64 84.22 0.90 3.51 16 29 C 0.12 4.04 6.23 86.85 0.54 4.58 16 30 H 0.24 15.64 6.77 -92.71 -0.63 15.01 16 31 H 0.36 19.28 6.46 -92.71 -0.60 18.68 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.02 0.91 8.03 -2.39 -0.02 0.89 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.45 8.04 -2.39 -0.02 1.43 16 36 H 0.10 1.05 7.02 -2.38 -0.02 1.03 16 37 H 0.10 1.08 6.80 -2.39 -0.02 1.06 16 38 H 0.24 2.25 4.47 -2.91 -0.01 2.24 16 39 H 0.16 1.22 6.85 -2.91 -0.02 1.20 16 40 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.15 1.88 7.78 -2.91 -0.02 1.86 16 43 H 0.21 3.20 7.09 -2.91 -0.02 3.18 16 44 H 0.06 2.10 7.96 -2.38 -0.02 2.08 16 45 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 Total: -1.00 -84.11 375.83 2.74 -81.36 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.58 Total: 25.19 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 7.88 Total: 6.06 kcal Atomic # 7 Polarization: -136.33 SS G_CDS: -7.70 Total: -144.03 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.07 Total: -23.21 kcal Atomic # 14 Polarization: 52.57 SS G_CDS: 2.05 Total: 54.62 kcal Total: -84.11 2.74 -81.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317339720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.743 kcal (2) G-P(sol) polarization free energy of solvation -84.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds