Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99978 * 2 1 4 4 H 1.48495 * 109.47227 * 269.99994 * 3 2 1 5 5 H 1.48501 * 109.47014 * 29.99740 * 3 2 1 6 6 H 1.48499 * 109.47595 * 149.99713 * 3 2 1 7 7 C 1.38816 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99437 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00035 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99667 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47057 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.91584 * 302.54781 * 11 10 9 13 13 C 1.55154 * 111.00486 * 178.64648 * 11 10 9 14 14 C 1.54322 * 102.94204 * 206.41955 * 13 11 10 15 15 N 1.47019 * 107.27223 * 22.19795 * 14 13 11 16 16 C 1.34777 * 125.65061 * 181.07843 * 15 14 13 17 17 O 1.21605 * 119.99947 * 179.97438 * 16 15 14 18 18 C 1.47424 * 119.99912 * 359.97151 * 16 15 14 19 19 C 1.41362 * 126.40557 * 359.69262 * 18 16 15 20 20 N 1.30448 * 108.07594 * 179.81715 * 19 18 16 21 21 N 1.39940 * 108.91471 * 0.44143 * 20 19 18 22 22 C 1.39915 * 125.77776 * 179.75344 * 21 20 19 23 23 C 1.39325 * 120.85249 * 179.68458 * 22 21 20 24 24 C 1.38016 * 119.07476 * 179.72965 * 23 22 21 25 25 N 1.31932 * 120.83037 * 0.54513 * 24 23 22 26 26 C 1.31936 * 121.88853 * 359.72490 * 25 24 23 27 27 C 1.38003 * 120.83332 * 359.97438 * 26 25 24 28 28 C 1.34602 * 108.44670 * 359.71600 * 21 20 19 29 29 C 1.47426 * 108.70209 * 1.05519 * 15 14 13 30 30 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00176 * 0.02562 * 9 7 2 32 32 H 1.08993 * 109.47281 * 60.00134 * 10 9 7 33 33 H 1.09005 * 109.46814 * 300.00002 * 10 9 7 34 34 H 1.08999 * 110.71557 * 88.06051 * 13 11 10 35 35 H 1.08995 * 110.87338 * 324.85869 * 13 11 10 36 36 H 1.09001 * 109.88768 * 262.77536 * 14 13 11 37 37 H 1.09003 * 109.87844 * 141.61039 * 14 13 11 38 38 H 1.08000 * 125.96243 * 359.96356 * 19 18 16 39 39 H 1.07998 * 120.46537 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.58237 * 180.29359 * 24 23 22 41 41 H 1.08000 * 119.58498 * 180.02562 * 26 25 24 42 42 H 1.07992 * 120.46031 * 179.97438 * 27 26 25 43 43 H 1.08002 * 126.31507 * 180.02562 * 28 21 20 44 44 H 1.08998 * 110.36718 * 94.71247 * 29 15 14 45 45 H 1.09005 * 110.36600 * 217.03808 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 1 5.8989 -1.5815 -0.8583 13 6 6.4278 -3.5132 0.0342 14 6 7.7538 -3.0878 0.6995 15 7 7.4848 -1.8611 1.4638 16 6 8.3932 -1.1623 2.1730 17 8 8.0569 -0.1571 2.7689 18 6 9.7947 -1.6167 2.2262 19 6 10.3299 -2.7622 1.5940 20 7 11.6025 -2.8219 1.8744 21 7 11.9372 -1.7396 2.6959 22 6 13.2094 -1.4654 3.2097 23 6 13.4294 -0.3504 4.0157 24 6 14.6979 -0.1180 4.5074 25 7 15.6959 -0.9295 4.2141 26 6 15.5287 -1.9921 3.4501 27 6 14.2899 -2.2974 2.9243 28 6 10.8283 -1.0065 2.9075 29 6 6.0568 -1.5217 1.3257 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 -0.0004 32 1 3.8486 -3.0426 -0.8897 33 1 3.8492 -3.0422 0.8903 34 1 6.6045 -3.8834 -0.9756 35 1 5.9186 -4.2660 0.6359 36 1 8.5056 -2.8910 -0.0648 37 1 8.1008 -3.8739 1.3701 38 1 9.7814 -3.4641 0.9833 39 1 12.6178 0.3205 4.2556 40 1 14.8766 0.7412 5.1369 41 1 16.3719 -2.6315 3.2342 42 1 14.1599 -3.1684 2.2993 43 1 10.7601 -0.1066 3.5007 44 1 5.4879 -1.9268 2.1626 45 1 5.9278 -0.4409 1.2660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317339721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = 89.947215 kcal Electronic energy + Delta-G solvation = -28020.834472 eV Core-core repulsion = 24040.115282 eV Total energy + Delta-G solvation = -3980.719189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.02966 -41.21958 -40.64408 -38.78179 -36.61232 -35.59799 -34.02116 -32.65296 -32.46795 -31.62890 -31.22033 -30.11161 -27.56998 -25.64194 -25.18790 -24.70623 -23.55933 -22.58406 -22.16386 -21.44696 -20.74103 -19.78442 -19.33961 -17.92610 -17.41959 -17.16934 -16.88705 -16.81039 -16.57349 -16.52551 -16.13603 -15.75877 -15.47856 -15.25453 -14.91369 -14.80721 -14.79202 -14.60920 -14.17108 -14.10622 -13.89464 -13.69150 -13.33216 -12.97272 -12.92740 -12.79455 -12.30976 -12.19492 -12.14554 -11.94675 -11.86339 -11.73541 -11.56489 -11.13072 -10.97648 -10.71299 -10.60207 -10.34227 -9.84748 -9.59557 -9.28531 -8.03273 -5.35487 -0.59373 -0.01453 0.63380 0.89967 1.04314 1.36815 1.39041 1.45568 1.89991 2.23866 2.46808 2.70184 3.05434 3.28176 3.36204 3.41757 3.46061 3.61283 3.69663 3.71869 3.78385 3.87867 3.98408 4.04725 4.11222 4.29032 4.33200 4.37754 4.44866 4.53787 4.60779 4.66445 4.74017 4.80185 4.84042 4.87671 5.04170 5.08373 5.15179 5.22503 5.29483 5.39601 5.44401 5.71073 5.76765 6.19800 6.21200 6.46951 6.85317 7.05527 7.08219 7.85598 8.01849 9.18188 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.001988 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.107751 B =14084.141787 C =15056.500169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.260 1.260 7 C -0.230 4.230 8 H 0.062 0.938 9 N -0.762 5.762 10 C 0.165 3.835 11 C -0.101 4.101 12 H 0.087 0.913 13 C -0.113 4.113 14 C 0.086 3.914 15 N -0.611 5.611 16 C 0.601 3.399 17 O -0.594 6.594 18 C -0.286 4.286 19 C 0.095 3.905 20 N -0.303 5.303 21 N -0.319 5.319 22 C 0.177 3.823 23 C -0.193 4.193 24 C 0.127 3.873 25 N -0.512 5.512 26 C 0.124 3.876 27 C -0.175 4.175 28 C 0.133 3.867 29 C 0.115 3.885 30 H 0.257 0.743 31 H 0.363 0.637 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.237 0.763 39 H 0.163 0.837 40 H 0.194 0.806 41 H 0.192 0.808 42 H 0.154 0.846 43 H 0.210 0.790 44 H 0.063 0.937 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.390 -8.323 4.943 36.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.185 1.185 7 C -0.361 4.361 8 H 0.080 0.920 9 N -0.407 5.407 10 C 0.039 3.961 11 C -0.121 4.121 12 H 0.106 0.894 13 C -0.151 4.151 14 C -0.035 4.035 15 N -0.343 5.343 16 C 0.392 3.608 17 O -0.476 6.476 18 C -0.300 4.300 19 C -0.093 4.093 20 N -0.120 5.120 21 N -0.091 5.091 22 C 0.077 3.923 23 C -0.216 4.216 24 C -0.030 4.030 25 N -0.222 5.222 26 C -0.033 4.033 27 C -0.197 4.197 28 C -0.014 4.014 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.196 0.804 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.253 0.747 39 H 0.181 0.819 40 H 0.211 0.789 41 H 0.209 0.791 42 H 0.172 0.828 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 37.076 -8.363 5.482 38.401 hybrid contribution -2.175 1.646 -0.129 2.731 sum 34.901 -6.717 5.353 35.942 Atomic orbital electron populations 1.69864 1.06948 1.26537 1.59941 1.25431 0.96037 1.00924 1.02959 0.85511 0.78483 0.80297 0.78116 1.20186 1.22374 1.18473 1.19071 0.82762 0.93524 1.40775 0.91961 1.42803 1.02558 1.04394 1.90966 1.20780 0.88976 0.87248 0.99130 1.22485 0.94584 0.98738 0.96265 0.89420 1.22701 0.93292 0.95488 1.03631 1.22740 0.99348 0.85685 0.95741 1.48308 1.08811 1.27707 1.49424 1.17145 0.84018 0.81877 0.77767 1.90781 1.81429 1.27695 1.47669 1.20139 0.93948 1.02878 1.12995 1.25426 0.90749 0.96341 0.96822 1.77269 1.16415 1.06341 1.11961 1.45707 1.06293 1.19922 1.37166 1.18188 0.81988 0.96494 0.95642 1.22233 1.01565 0.97575 1.00195 1.23189 0.86490 0.97894 0.95393 1.67788 1.35191 1.05067 1.14168 1.23195 0.96278 0.93209 0.90590 1.22087 0.92372 1.01701 1.03526 1.23350 0.84497 0.97071 0.96523 1.22174 0.80500 0.99720 0.98355 0.93395 0.80409 0.94073 0.95221 0.86721 0.89158 0.88377 0.88209 0.74685 0.81936 0.78873 0.79146 0.82846 0.77371 0.91907 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.45 13.97 21.65 0.30 -63.15 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 3 Si 0.95 46.84 27.73 68.60 1.90 48.74 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.26 -11.99 6.52 99.48 0.65 -11.35 16 7 C -0.23 -13.10 10.47 84.03 0.88 -12.22 16 8 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 9 N -0.76 -34.99 5.26 -343.44 -1.81 -36.80 16 10 C 0.16 5.65 5.71 86.38 0.49 6.14 16 11 C -0.10 -2.55 3.10 -9.40 -0.03 -2.58 16 12 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.11 -1.66 6.42 31.78 0.20 -1.46 16 14 C 0.09 1.15 4.98 86.73 0.43 1.58 16 15 N -0.61 -14.59 3.33 -815.66 -2.71 -17.30 16 16 C 0.60 16.49 7.85 86.66 0.68 17.17 16 17 O -0.59 -21.54 17.15 -4.05 -0.07 -21.61 16 18 C -0.29 -5.86 6.09 -20.14 -0.12 -5.98 16 19 C 0.10 1.47 10.45 85.67 0.89 2.37 16 20 N -0.30 -5.40 11.87 -56.22 -0.67 -6.07 16 21 N -0.32 -5.53 3.76 -185.66 -0.70 -6.23 16 22 C 0.18 2.59 6.73 38.37 0.26 2.85 16 23 C -0.19 -2.07 9.52 22.48 0.21 -1.85 16 24 C 0.13 1.26 11.17 84.63 0.95 2.20 16 25 N -0.51 -6.74 10.36 -196.06 -2.03 -8.77 16 26 C 0.12 1.32 11.17 84.62 0.95 2.26 16 27 C -0.18 -2.20 9.73 22.48 0.22 -1.98 16 28 C 0.13 2.40 10.64 84.22 0.90 3.30 16 29 C 0.12 3.40 6.08 86.86 0.53 3.93 16 30 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 31 H 0.36 16.39 5.40 -92.71 -0.50 15.89 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.03 1.04 8.10 -2.38 -0.02 1.02 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.25 8.04 -2.39 -0.02 1.23 16 36 H 0.10 0.87 6.85 -2.39 -0.02 0.85 16 37 H 0.10 0.86 6.98 -2.39 -0.02 0.85 16 38 H 0.24 1.91 4.47 -2.91 -0.01 1.90 16 39 H 0.16 1.06 6.85 -2.91 -0.02 1.04 16 40 H 0.19 0.72 8.06 -2.91 -0.02 0.69 16 41 H 0.19 0.87 8.06 -2.91 -0.02 0.84 16 42 H 0.15 1.77 7.78 -2.91 -0.02 1.75 16 43 H 0.21 2.89 7.09 -2.91 -0.02 2.87 16 44 H 0.06 2.00 8.00 -2.39 -0.02 1.98 16 45 H 0.05 1.73 8.04 -2.38 -0.02 1.71 16 Total: -1.00 -83.10 374.28 2.60 -80.49 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.48 Total: 18.19 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 7.91 Total: 12.50 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -7.61 Total: -138.31 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.07 Total: -21.61 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.90 Total: 48.74 kcal Total: -83.10 2.60 -80.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317339721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.440 kcal (2) G-P(sol) polarization free energy of solvation -83.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds