Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86803 * 119.99589 * 2 1 4 4 H 1.48493 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46835 * 299.99659 * 3 2 1 6 6 H 1.48498 * 109.47488 * 59.99698 * 3 2 1 7 7 C 1.38794 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99699 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00097 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47313 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99855 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99987 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46729 * 179.97438 * 14 13 11 16 16 H 1.09003 * 110.76949 * 308.20050 * 15 14 13 17 17 C 1.55138 * 110.70939 * 71.40399 * 15 14 13 18 18 C 1.54906 * 101.65573 * 154.03414 * 17 15 14 19 19 N 1.47840 * 104.79510 * 322.92945 * 18 17 15 20 20 C 1.46897 * 110.99988 * 146.36231 * 19 18 17 21 21 C 1.50702 * 109.46815 * 69.15983 * 20 19 18 22 22 O 1.21284 * 120.00147 * 359.97438 * 21 20 19 23 23 N 1.34781 * 120.00074 * 179.97438 * 21 20 19 24 24 C 1.47067 * 136.05373 * 359.62837 * 23 21 20 25 25 C 1.53240 * 88.08145 * 207.19964 * 24 23 21 26 26 C 1.47064 * 136.05745 * 179.97438 * 23 21 20 27 27 C 1.47446 * 108.56768 * 24.09731 * 19 18 17 28 28 H 0.97000 * 120.00224 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.47155 * 59.99781 * 10 9 7 30 30 H 1.09004 * 109.47196 * 300.00154 * 10 9 7 31 31 H 0.97001 * 120.00098 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.46659 * 60.00222 * 14 13 11 33 33 H 1.08995 * 109.47514 * 299.99821 * 14 13 11 34 34 H 1.09006 * 110.98929 * 35.93882 * 17 15 14 35 35 H 1.09000 * 111.02473 * 272.14364 * 17 15 14 36 36 H 1.08998 * 110.36925 * 204.09914 * 18 17 15 37 37 H 1.08993 * 110.46447 * 81.81035 * 18 17 15 38 38 H 1.09000 * 109.47549 * 189.15647 * 20 19 18 39 39 H 1.08995 * 109.47180 * 309.16230 * 20 19 18 40 40 H 1.09000 * 113.47189 * 321.93964 * 24 23 21 41 41 H 1.09007 * 113.46983 * 92.37529 * 24 23 21 42 42 H 1.08996 * 114.32571 * 220.47088 * 25 24 23 43 43 H 1.09001 * 114.19459 * 87.72904 * 25 24 23 44 44 H 1.09003 * 113.46944 * 267.62574 * 26 23 21 45 45 H 1.09000 * 113.46942 * 38.07172 * 26 23 21 46 46 H 1.08996 * 109.88895 * 118.41939 * 27 19 18 47 47 H 1.09001 * 109.88694 * 239.60335 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9877 -5.3027 -0.0001 12 8 0.7914 -5.5023 0.0000 13 7 2.8445 -6.3430 0.0003 14 6 2.3308 -7.7150 0.0003 15 6 3.5029 -8.6984 0.0001 16 1 4.2041 -8.4639 -0.8008 17 6 4.2207 -8.6965 1.3755 18 6 4.8395 -10.1163 1.4075 19 7 3.8305 -10.9824 0.7613 20 6 4.4731 -12.0704 0.0121 21 6 5.1116 -13.0359 0.9770 22 8 5.0391 -12.8370 2.1712 23 7 5.7634 -14.1206 0.5130 24 6 6.0554 -14.6953 -0.8089 25 6 6.1200 -16.0720 -0.1389 26 6 6.4903 -15.2533 1.1058 27 6 2.9967 -10.1507 -0.1258 28 1 -0.4850 0.8400 -0.0004 29 1 3.1247 -3.7312 0.8906 30 1 3.1247 -3.7312 -0.8895 31 1 3.8013 -6.1834 0.0006 32 1 1.7225 -7.8751 -0.8900 33 1 1.7219 -7.8751 0.8900 34 1 3.5068 -8.5632 2.1883 35 1 4.9965 -7.9316 1.4107 36 1 5.0086 -10.4333 2.4365 37 1 5.7735 -10.1377 0.8462 38 1 3.7244 -12.5934 -0.5831 39 1 5.2366 -11.6566 -0.6465 40 1 5.2324 -14.5967 -1.5166 41 1 7.0095 -14.3690 -1.2231 42 1 6.9211 -16.7131 -0.5066 43 1 5.1584 -16.5807 -0.0697 44 1 7.5612 -15.0769 1.2065 45 1 6.0362 -15.6283 2.0230 46 1 3.0981 -10.4908 -1.1564 47 1 1.9535 -10.2080 0.1848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317515143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = -23.205923 kcal Electronic energy + Delta-G solvation = -26134.828973 eV Core-core repulsion = 22252.354296 eV Total energy + Delta-G solvation = -3882.474677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85677 -39.78232 -38.89188 -37.82107 -34.91549 -32.49993 -32.41433 -30.72894 -29.94913 -28.99037 -27.28433 -26.32936 -25.50105 -24.46916 -22.69583 -21.45988 -20.77607 -20.15383 -19.44720 -17.84065 -17.67670 -16.87266 -16.83536 -16.32493 -16.05127 -15.67895 -15.26268 -15.13198 -14.80148 -14.72964 -14.02766 -13.94673 -13.81498 -13.55762 -13.40782 -13.22325 -13.11735 -12.86263 -12.68810 -12.49859 -12.38038 -12.11670 -11.89986 -11.69103 -11.47624 -11.36284 -11.09143 -11.06250 -11.00931 -10.95002 -10.74635 -10.10488 -9.79646 -9.39267 -9.23050 -9.06961 -8.85720 -8.68906 -8.21746 -6.48748 -6.20893 -3.91248 2.17917 2.29466 3.04673 3.12742 3.22113 3.28820 3.33444 3.52951 3.71840 3.72183 3.97168 4.21155 4.26922 4.29530 4.37483 4.52785 4.57676 4.73812 4.76313 4.78877 4.83984 4.97006 5.03566 5.05156 5.10750 5.12352 5.14322 5.15744 5.24254 5.27622 5.51203 5.56054 5.59201 5.65739 5.70483 5.86580 5.87519 5.91663 6.03548 6.15206 6.53503 6.54833 6.64551 7.22444 7.60692 7.72738 7.79624 8.36270 8.63909 9.24567 10.86616 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.040292 B = 0.001462 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.761900 B =19147.745395 C =19378.646875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.134 3.866 15 C -0.121 4.121 16 H 0.082 0.918 17 C -0.125 4.125 18 C 0.047 3.953 19 N -0.512 5.512 20 C 0.039 3.961 21 C 0.542 3.458 22 O -0.516 6.516 23 N -0.656 5.656 24 C 0.098 3.902 25 C -0.156 4.156 26 C 0.104 3.896 27 C 0.052 3.948 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.538 -32.784 -3.660 36.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.393 5.393 14 C 0.009 3.991 15 C -0.141 4.141 16 H 0.101 0.899 17 C -0.164 4.164 18 C -0.080 4.080 19 N -0.236 5.236 20 C -0.092 4.092 21 C 0.331 3.669 22 O -0.390 6.390 23 N -0.395 5.395 24 C -0.025 4.025 25 C -0.194 4.194 26 C -0.019 4.019 27 C -0.076 4.076 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.869 -32.925 -2.530 35.816 hybrid contribution 3.076 1.666 -0.776 3.583 sum 16.945 -31.259 -3.306 35.709 Atomic orbital electron populations 1.70029 1.05951 1.27335 1.46966 1.24989 0.95017 0.99018 0.94547 0.86118 0.79574 0.81907 0.77899 1.19640 1.20578 1.20555 1.22912 0.94944 0.91677 1.58814 0.90895 1.85406 1.04968 0.96325 1.96704 1.23531 1.06537 0.95458 1.04869 1.20298 0.86528 0.86277 0.75178 1.90704 1.15375 1.85614 1.47475 1.45979 1.09858 1.05478 1.77975 1.21215 0.94950 0.80316 1.02614 1.22634 0.97711 0.95141 0.98609 0.89928 1.22850 1.00201 0.96285 0.97016 1.23102 0.92551 0.91396 1.00969 1.63333 1.21204 1.10321 1.28735 1.22112 0.98934 0.93628 0.94522 1.20189 0.77827 0.79409 0.89470 1.90728 1.59037 1.72820 1.16425 1.49736 1.54566 1.24622 1.10551 1.22960 1.01508 0.90993 0.87058 1.23347 1.03538 0.95892 0.96614 1.22918 0.97112 0.83561 0.98306 1.22829 0.98940 0.90365 0.95506 0.92239 0.89242 0.89303 0.76952 0.91505 0.91115 0.89867 0.90498 0.89039 0.94090 0.87922 0.91853 0.90292 0.89620 0.89070 0.88650 0.89858 0.90377 0.92210 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 9.97 7.85 -10.98 -0.09 9.89 16 12 O -0.52 -11.91 15.86 5.56 0.09 -11.82 16 13 N -0.74 -9.76 5.47 -60.29 -0.33 -10.09 16 14 C 0.13 1.53 4.97 -4.04 -0.02 1.51 16 15 C -0.12 -1.01 2.96 -88.80 -0.26 -1.28 16 16 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 17 C -0.13 -1.11 6.44 -24.59 -0.16 -1.26 16 18 C 0.05 0.44 5.74 -2.30 -0.01 0.43 16 19 N -0.51 -4.84 4.86 -232.70 -1.13 -5.98 16 20 C 0.04 0.29 4.88 -4.98 -0.02 0.27 16 21 C 0.54 5.26 7.87 -10.98 -0.09 5.17 16 22 O -0.52 -7.23 15.81 5.55 0.09 -7.15 16 23 N -0.66 -4.37 3.69 -185.39 -0.68 -5.05 16 24 C 0.10 0.26 8.40 -8.63 -0.07 0.19 16 25 C -0.16 -0.31 8.48 -26.34 -0.22 -0.53 16 26 C 0.10 0.48 8.61 -8.49 -0.07 0.41 16 27 C 0.05 0.42 6.46 -2.83 -0.02 0.40 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 30 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 31 H 0.40 4.09 8.47 -40.82 -0.35 3.75 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.91 8.00 -51.93 -0.42 0.49 16 34 H 0.08 0.84 7.94 -51.93 -0.41 0.43 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.05 7.38 -51.93 -0.38 0.67 16 37 H 0.04 0.35 7.62 -51.93 -0.40 -0.04 16 38 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 39 H 0.06 0.37 7.85 -51.93 -0.41 -0.03 16 40 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 43 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.38 7.55 -51.93 -0.39 -0.01 16 47 H 0.09 0.77 7.82 -51.93 -0.41 0.37 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -38.28 400.52 -10.82 -49.10 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.77 Total: -1.37 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.62 Total: -0.73 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -1.41 Total: -46.69 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.18 Total: -18.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.28 -10.82 -49.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317515143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.897 kcal (2) G-P(sol) polarization free energy of solvation -38.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds