Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00076 * 2 1 4 4 H 1.48507 * 109.46980 * 269.99497 * 3 2 1 5 5 H 1.48498 * 109.47247 * 29.99572 * 3 2 1 6 6 H 1.48493 * 109.47534 * 149.99828 * 3 2 1 7 7 C 1.38803 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00218 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99726 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99853 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46936 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00029 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99770 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99849 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47170 * 180.02562 * 14 13 11 16 16 H 1.08992 * 110.64095 * 54.29790 * 15 14 13 17 17 C 1.54599 * 110.71974 * 291.14573 * 15 14 13 18 18 C 1.53994 * 105.13758 * 219.50534 * 17 15 14 19 19 N 1.47907 * 107.05724 * 358.77689 * 18 17 15 20 20 C 1.46901 * 110.99792 * 145.84427 * 19 18 17 21 21 C 1.50704 * 109.46986 * 183.35915 * 20 19 18 22 22 O 1.21280 * 119.99920 * 353.87009 * 21 20 19 23 23 N 1.34779 * 119.99963 * 173.86778 * 21 20 19 24 24 C 1.47059 * 136.05548 * 359.63241 * 23 21 20 25 25 C 1.53239 * 88.08199 * 207.19979 * 24 23 21 26 26 C 1.47064 * 136.05595 * 179.97438 * 23 21 20 27 27 C 1.48533 * 105.82097 * 25.33167 * 19 18 17 28 28 H 0.97000 * 120.00315 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46760 * 60.00205 * 10 9 7 30 30 H 1.08999 * 109.47204 * 299.99725 * 10 9 7 31 31 H 0.96997 * 119.99909 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47513 * 59.99713 * 14 13 11 33 33 H 1.08998 * 109.47477 * 299.99965 * 14 13 11 34 34 H 1.09001 * 110.30931 * 338.41841 * 17 15 14 35 35 H 1.09002 * 110.30807 * 100.49056 * 17 15 14 36 36 H 1.08994 * 109.91847 * 118.12825 * 18 17 15 37 37 H 1.08997 * 109.91902 * 239.22843 * 18 17 15 38 38 H 1.08993 * 109.47231 * 303.36337 * 20 19 18 39 39 H 1.08998 * 109.47269 * 63.36262 * 20 19 18 40 40 H 1.09001 * 113.47179 * 321.93475 * 24 23 21 41 41 H 1.09005 * 113.46652 * 92.37713 * 24 23 21 42 42 H 1.09002 * 114.32758 * 220.46484 * 25 24 23 43 43 H 1.09005 * 114.00935 * 87.71735 * 25 24 23 44 44 H 1.08995 * 113.46695 * 267.62570 * 26 23 21 45 45 H 1.09000 * 113.46444 * 38.00982 * 26 23 21 46 46 H 1.09001 * 110.66640 * 202.36236 * 27 19 18 47 47 H 1.08993 * 110.66538 * 79.22585 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0018 14 6 2.3304 -7.7151 0.0019 15 6 3.5025 -8.6986 0.0033 16 1 4.1786 -8.4893 0.8321 17 6 4.2580 -8.6511 -1.3447 18 6 4.6152 -10.1160 -1.6573 19 7 4.1150 -10.9343 -0.5313 20 6 3.6563 -12.2492 -0.9992 21 6 3.0792 -13.0213 0.1593 22 8 3.1527 -12.5727 1.2837 23 7 2.4814 -14.2102 -0.0543 24 6 2.1959 -15.0572 -1.2221 25 6 0.9950 -15.6209 -0.4551 26 6 1.8222 -15.2284 0.7772 27 6 2.9956 -10.1614 0.0651 28 1 -0.4850 0.8400 -0.0004 29 1 3.1244 -3.7313 0.8906 30 1 3.1245 -3.7314 -0.8895 31 1 3.8009 -6.1835 0.0015 32 1 1.7222 -7.8754 -0.8883 33 1 1.7214 -7.8750 0.8916 34 1 3.6147 -8.2438 -2.1248 35 1 5.1632 -8.0513 -1.2501 36 1 4.1332 -10.4261 -2.5844 37 1 5.6961 -10.2237 -1.7469 38 1 2.8916 -12.1161 -1.7642 39 1 4.4984 -12.7995 -1.4190 40 1 1.9151 -14.4915 -2.1105 41 1 2.9705 -15.7980 -1.4208 42 1 0.8508 -16.6949 -0.5730 43 1 0.0784 -15.0444 -0.5805 44 1 2.4962 -16.0151 1.1160 45 1 1.2249 -14.8080 1.5862 46 1 2.8249 -10.4660 1.0976 47 1 2.0882 -10.2795 -0.5270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317515145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = -22.465467 kcal Electronic energy + Delta-G solvation = -26345.519938 eV Core-core repulsion = 22463.077369 eV Total energy + Delta-G solvation = -3882.442569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87417 -39.73480 -38.87524 -37.78526 -34.92908 -32.52343 -32.40424 -30.70618 -29.94012 -28.92272 -27.20607 -26.31181 -25.49344 -24.59146 -22.63196 -21.49059 -20.53011 -20.18165 -19.41738 -17.82178 -17.62180 -16.85213 -16.70006 -16.32804 -16.09999 -15.78592 -15.34730 -15.07055 -14.79116 -14.76465 -14.23509 -13.87115 -13.72278 -13.57364 -13.21497 -13.13572 -13.12022 -12.99126 -12.64643 -12.52047 -12.21560 -12.10056 -11.87950 -11.77120 -11.39779 -11.29920 -11.07338 -11.03874 -11.00259 -10.83750 -10.73754 -10.06916 -9.79323 -9.36341 -9.22395 -9.05021 -8.84279 -8.79015 -8.20886 -6.47544 -6.19613 -3.89957 2.18198 2.28699 3.05988 3.14794 3.23893 3.29408 3.33728 3.54014 3.72045 3.77134 3.94706 4.22554 4.34073 4.36314 4.43803 4.54692 4.57510 4.75832 4.80848 4.82384 4.86064 4.90135 5.06702 5.12071 5.14919 5.15487 5.17230 5.22543 5.27969 5.37111 5.50699 5.54229 5.62435 5.65255 5.68943 5.81155 5.92119 6.00144 6.05684 6.17394 6.47446 6.50030 6.67366 7.22977 7.61629 7.76375 7.78263 8.37324 8.66288 9.25656 10.87834 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030430 B = 0.001589 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.920741 B =17622.071578 C =18116.739062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.131 3.869 15 C -0.102 4.102 16 H 0.092 0.908 17 C -0.129 4.129 18 C 0.037 3.963 19 N -0.500 5.500 20 C 0.036 3.964 21 C 0.541 3.459 22 O -0.516 6.516 23 N -0.655 5.655 24 C 0.098 3.902 25 C -0.156 4.156 26 C 0.104 3.896 27 C 0.043 3.957 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.104 0.896 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -33.947 -5.319 35.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.391 5.391 14 C 0.007 3.993 15 C -0.122 4.122 16 H 0.110 0.890 17 C -0.167 4.167 18 C -0.091 4.091 19 N -0.225 5.225 20 C -0.095 4.095 21 C 0.330 3.670 22 O -0.391 6.391 23 N -0.393 5.393 24 C -0.025 4.025 25 C -0.194 4.194 26 C -0.019 4.019 27 C -0.085 4.085 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.232 0.768 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.122 0.878 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.344 -33.800 -4.283 34.853 hybrid contribution 1.905 1.308 -0.752 2.430 sum 9.249 -32.492 -5.034 34.156 Atomic orbital electron populations 1.70019 1.05955 1.27426 1.46912 1.24991 0.95021 0.99017 0.94551 0.86166 0.79420 0.81575 0.78321 1.20292 1.20755 1.19698 1.22877 0.94926 0.91686 1.58891 0.90924 1.85395 1.05020 0.96314 1.96713 1.23530 1.06511 0.95417 1.04912 1.20310 0.86523 0.86294 0.75166 1.90701 1.15407 1.85643 1.47593 1.45966 1.09928 1.05396 1.77856 1.21223 0.95188 0.80553 1.02355 1.22321 0.97069 0.94194 0.98599 0.88962 1.22520 1.01030 0.95817 0.97295 1.22904 1.01171 0.92837 0.92161 1.64621 1.30851 1.00814 1.26170 1.22098 1.00334 0.92422 0.94657 1.20125 0.76610 0.79608 0.90619 1.90723 1.56283 1.67507 1.24542 1.49729 1.59052 1.18190 1.12330 1.22973 0.96274 0.92415 0.90871 1.23357 0.97544 1.02338 0.96179 1.22928 0.93752 0.89274 0.95916 1.23332 0.91631 0.91358 1.02169 0.92203 0.89210 0.89256 0.76819 0.91744 0.91394 0.90757 0.90499 0.93590 0.89936 0.91934 0.87697 0.90355 0.89522 0.88991 0.88630 0.89777 0.90303 0.87803 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 11 C 0.53 10.20 7.85 -10.98 -0.09 10.11 16 12 O -0.52 -12.16 15.86 5.55 0.09 -12.07 16 13 N -0.74 -10.19 5.43 -60.29 -0.33 -10.52 16 14 C 0.13 1.63 5.02 -4.04 -0.02 1.61 16 15 C -0.10 -1.01 3.09 -88.75 -0.27 -1.28 16 16 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 17 C -0.13 -1.06 6.31 -25.37 -0.16 -1.22 16 18 C 0.04 0.28 6.70 -2.75 -0.02 0.26 16 19 N -0.50 -4.75 5.11 -231.89 -1.18 -5.93 16 20 C 0.04 0.28 5.13 -4.97 -0.03 0.25 16 21 C 0.54 5.36 7.71 -10.98 -0.08 5.28 16 22 O -0.52 -7.27 15.07 5.56 0.08 -7.19 16 23 N -0.65 -4.56 3.69 -185.44 -0.68 -5.24 16 24 C 0.10 0.29 8.40 -8.65 -0.07 0.22 16 25 C -0.16 -0.38 8.48 -26.34 -0.22 -0.61 16 26 C 0.10 0.53 8.61 -8.50 -0.07 0.45 16 27 C 0.04 0.45 5.04 -1.90 -0.01 0.44 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.40 4.34 8.40 -40.82 -0.34 4.00 16 32 H 0.06 0.85 8.02 -51.93 -0.42 0.43 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.65 7.77 -51.93 -0.40 0.24 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.30 7.68 -51.93 -0.40 -0.10 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.39 7.98 -51.93 -0.41 -0.02 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 43 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.10 1.31 6.43 -51.93 -0.33 0.98 16 47 H 0.04 0.45 7.92 -51.93 -0.41 0.04 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -38.16 399.49 -10.90 -49.06 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.76 Total: -0.58 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -0.63 Total: -0.55 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -1.46 Total: -47.39 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.16 -10.90 -49.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317515145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.596 kcal (2) G-P(sol) polarization free energy of solvation -38.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds