Wall clock time and date at job start Sat Apr 11 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99977 * 2 1 4 4 H 1.48496 * 109.46949 * 239.99560 * 3 2 1 5 5 H 1.48497 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46948 * 119.99500 * 3 2 1 7 7 C 1.38799 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99840 * 180.02562 * 7 2 1 9 9 S 1.76191 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00052 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47504 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99772 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00256 * 180.02562 * 11 10 9 14 14 C 1.47534 * 126.98000 * 359.97438 * 13 11 10 15 15 C 1.54157 * 107.06558 * 205.27326 * 14 13 11 16 16 C 1.53925 * 104.86163 * 358.26196 * 15 14 13 17 17 C 1.48248 * 126.98072 * 179.97438 * 13 11 10 18 18 C 1.52294 * 110.57458 * 220.48937 * 16 15 14 19 19 C 1.53182 * 109.37116 * 292.63990 * 18 16 15 20 20 N 1.46856 * 109.41072 * 302.09113 * 19 18 16 21 21 C 1.46896 * 111.00336 * 186.54934 * 20 19 18 22 22 C 1.50704 * 109.47355 * 65.60515 * 21 20 19 23 23 N 1.34774 * 120.00193 * 180.02562 * 22 21 20 24 24 O 1.21279 * 119.99814 * 0.02562 * 22 21 20 25 25 C 1.46861 * 111.33693 * 62.34333 * 20 19 18 26 26 C 1.52296 * 110.57385 * 97.15396 * 16 15 14 27 27 H 0.97007 * 120.00357 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47211 * 60.00065 * 10 9 7 29 29 H 1.09002 * 109.47515 * 300.00212 * 10 9 7 30 30 H 1.09008 * 109.91995 * 85.91897 * 14 13 11 31 31 H 1.09000 * 110.07984 * 324.72061 * 14 13 11 32 32 H 1.09004 * 110.35937 * 117.11107 * 15 14 13 33 33 H 1.09003 * 110.36179 * 239.41394 * 15 14 13 34 34 H 1.09005 * 110.67110 * 259.89355 * 17 13 11 35 35 H 1.09004 * 110.67064 * 22.86163 * 17 13 11 36 36 H 1.09005 * 109.48231 * 52.60889 * 18 16 15 37 37 H 1.08993 * 109.48642 * 172.66579 * 18 16 15 38 38 H 1.09003 * 109.47694 * 182.10795 * 19 18 16 39 39 H 1.08995 * 109.48804 * 62.07364 * 19 18 16 40 40 H 1.08996 * 109.47351 * 185.60633 * 21 20 19 41 41 H 1.08998 * 109.46757 * 305.60575 * 21 20 19 42 42 H 0.97005 * 119.99984 * 0.02562 * 23 22 21 43 43 H 0.96996 * 120.00112 * 179.97438 * 23 22 21 44 44 H 1.09007 * 109.47688 * 177.66762 * 25 20 19 45 45 H 1.09001 * 109.48568 * 57.63994 * 25 20 19 46 46 H 1.09000 * 109.48620 * 187.32479 * 26 16 15 47 47 H 1.08995 * 109.49027 * 307.38723 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7911 -5.5023 -0.0010 13 7 2.8442 -6.3431 0.0003 14 6 4.3181 -6.2789 0.0008 15 6 4.8283 -7.5907 -0.6280 16 6 3.5567 -8.4020 -0.9350 17 6 2.4969 -7.7843 0.0003 18 6 3.7669 -9.8730 -0.6017 19 6 4.7955 -10.4707 -1.5667 20 7 4.3262 -10.2996 -2.9477 21 6 5.2083 -10.9959 -3.8936 22 6 5.1244 -12.4821 -3.6581 23 7 5.8537 -13.3265 -4.4142 24 8 4.4006 -12.9182 -2.7882 25 6 4.1975 -8.8788 -3.2961 26 6 3.1480 -8.2257 -2.3915 27 1 -0.4851 0.8401 -0.0004 28 1 3.1245 -3.7313 0.8906 29 1 3.1245 -3.7313 -0.8894 30 1 4.6856 -6.1898 1.0232 31 1 4.6559 -5.4278 -0.5904 32 1 5.3766 -7.3826 -1.5469 33 1 5.4604 -8.1291 0.0781 34 1 2.5804 -8.2002 1.0045 35 1 1.4933 -7.9383 -0.3962 36 1 4.1314 -9.9655 0.4214 37 1 2.8219 -10.4070 -0.7010 38 1 4.9196 -11.5325 -1.3537 39 1 5.7507 -9.9608 -1.4416 40 1 4.8967 -10.7716 -4.9137 41 1 6.2353 -10.6621 -3.7458 42 1 6.4329 -12.9776 -5.1097 43 1 5.7999 -14.2830 -4.2623 44 1 3.8881 -8.7865 -4.3373 45 1 5.1576 -8.3818 -3.1567 46 1 2.1801 -8.6985 -2.5574 47 1 3.0785 -7.1630 -2.6236 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323817152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:33 Heat of formation + Delta-G solvation = -64.870448 kcal Electronic energy + Delta-G solvation = -27650.528603 eV Core-core repulsion = 23766.247216 eV Total energy + Delta-G solvation = -3884.281387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.86785 -39.82807 -38.45802 -36.59266 -34.11603 -33.37701 -32.41476 -31.16879 -30.07394 -29.67462 -28.16654 -25.69770 -25.30608 -23.55342 -23.19275 -22.04238 -20.89210 -19.40373 -18.52113 -17.84834 -17.57645 -17.14195 -16.56596 -16.11500 -15.84467 -15.81190 -15.01369 -14.90693 -14.79571 -14.77459 -14.41491 -13.89671 -13.87614 -13.56698 -13.46398 -13.18818 -12.79518 -12.54866 -12.45872 -12.16653 -12.14997 -11.92326 -11.70337 -11.43846 -11.26576 -11.03206 -11.03179 -10.84137 -10.75072 -10.59154 -10.47870 -10.18296 -10.00807 -9.80049 -9.33915 -9.04649 -8.61936 -8.46158 -8.21265 -6.48249 -6.19912 -3.90484 2.24020 2.90052 2.95917 3.11874 3.24030 3.26918 3.30078 3.63229 3.66190 4.21247 4.25969 4.39572 4.44184 4.48981 4.71538 4.79031 4.85261 4.88886 5.01884 5.08612 5.12527 5.14924 5.16690 5.25407 5.36829 5.48349 5.50832 5.57262 5.65948 5.71799 5.74122 5.80148 5.82153 5.91506 5.95561 5.98303 6.11274 6.16374 6.21037 6.32746 6.46200 6.59403 6.76837 6.91834 7.60419 7.78255 7.86762 8.36368 8.61986 9.24953 10.87418 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.002009 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.712285 B =13934.412414 C =14223.616211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.551 3.449 12 O -0.516 6.516 13 N -0.627 5.627 14 C 0.103 3.897 15 C -0.125 4.125 16 C -0.071 4.071 17 C 0.116 3.884 18 C -0.097 4.097 19 C 0.054 3.946 20 N -0.521 5.521 21 C 0.034 3.966 22 C 0.516 3.484 23 N -0.860 5.860 24 O -0.521 6.521 25 C 0.058 3.942 26 C -0.099 4.099 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.029 0.971 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.400 0.600 43 H 0.402 0.598 44 H 0.076 0.924 45 H 0.037 0.963 46 H 0.075 0.925 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.840 -25.048 -8.537 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.340 3.660 12 O -0.391 6.391 13 N -0.364 5.364 14 C -0.021 4.021 15 C -0.163 4.163 16 C -0.072 4.072 17 C -0.007 4.007 18 C -0.135 4.135 19 C -0.074 4.074 20 N -0.246 5.246 21 C -0.097 4.097 22 C 0.300 3.700 23 N -0.425 5.425 24 O -0.396 6.396 25 C -0.069 4.069 26 C -0.136 4.136 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.047 0.953 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.228 0.772 43 H 0.232 0.768 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.094 0.906 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.807 -25.411 -7.938 30.463 hybrid contribution 3.246 1.445 -0.319 3.567 sum 18.053 -23.967 -8.257 31.121 Atomic orbital electron populations 1.70010 1.05935 1.27541 1.46759 1.24988 0.95025 0.98984 0.94565 0.86231 0.79241 0.81288 0.78771 1.19964 1.20801 1.19952 1.22818 0.94846 0.91679 1.59051 0.91032 1.85403 1.04970 0.96254 1.96702 1.23502 1.06395 0.95109 1.04665 1.19972 0.85622 0.85313 0.75076 1.90711 1.14896 1.85073 1.48381 1.48832 1.06435 1.05761 1.75397 1.22056 0.80773 0.98453 1.00817 1.22604 0.97209 0.95382 1.01153 1.21162 0.95142 0.95086 0.95847 1.22364 0.99221 0.80345 0.98736 1.21411 1.00414 0.93528 0.98141 1.22274 0.95666 1.02185 0.87231 1.61556 1.48936 1.11966 1.02154 1.21937 0.97149 0.91445 0.99166 1.20609 0.79120 0.89179 0.81132 1.43893 1.48433 1.10658 1.39559 1.90746 1.38105 1.78587 1.32118 1.22187 0.98462 0.86459 0.99815 1.21414 0.99035 1.00699 0.92501 0.92134 0.89413 0.89442 0.91714 0.90733 0.90729 0.90595 0.91357 0.89672 0.91164 0.90455 0.89046 0.95282 0.87733 0.91950 0.77199 0.76755 0.90535 0.94497 0.90606 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.06 5.23 36.01 0.19 -2.88 16 11 C 0.55 10.94 7.91 -10.99 -0.09 10.85 16 12 O -0.52 -12.32 16.07 5.55 0.09 -12.23 16 13 N -0.63 -9.30 3.26 -169.94 -0.55 -9.85 16 14 C 0.10 1.13 6.76 -2.87 -0.02 1.11 16 15 C -0.13 -1.07 5.12 -25.64 -0.13 -1.20 16 16 C -0.07 -0.69 0.57 -154.09 -0.09 -0.77 16 17 C 0.12 1.46 5.95 -2.42 -0.01 1.45 16 18 C -0.10 -0.86 4.74 -27.00 -0.13 -0.99 16 19 C 0.05 0.46 4.95 -3.75 -0.02 0.44 16 20 N -0.52 -4.42 4.38 -235.91 -1.03 -5.45 16 21 C 0.03 0.20 5.45 -4.98 -0.03 0.17 16 22 C 0.52 3.77 7.77 -10.98 -0.09 3.69 16 23 N -0.86 -2.85 8.87 31.22 0.28 -2.57 16 24 O -0.52 -6.24 15.16 5.56 0.08 -6.15 16 25 C 0.06 0.46 5.30 -3.76 -0.02 0.44 16 26 C -0.10 -1.00 4.79 -27.00 -0.13 -1.13 16 27 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 29 H 0.09 1.70 7.92 -51.92 -0.41 1.29 16 30 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.07 0.81 7.55 -51.93 -0.39 0.42 16 32 H 0.07 0.58 6.29 -51.93 -0.33 0.25 16 33 H 0.08 0.55 7.75 -51.93 -0.40 0.15 16 34 H 0.07 0.79 8.02 -51.93 -0.42 0.38 16 35 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 36 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.92 5.76 -51.93 -0.30 0.62 16 39 H 0.03 0.22 7.57 -51.93 -0.39 -0.17 16 40 H 0.10 0.43 7.98 -51.93 -0.41 0.02 16 41 H 0.06 0.26 8.13 -51.93 -0.42 -0.17 16 42 H 0.40 0.08 8.83 -40.82 -0.36 -0.28 16 43 H 0.40 1.15 8.93 -40.82 -0.36 0.78 16 44 H 0.08 0.55 8.00 -51.93 -0.42 0.14 16 45 H 0.04 0.27 6.61 -51.93 -0.34 -0.08 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -37.65 383.89 -9.65 -47.31 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.44 Total: -1.93 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.36 Total: -1.90 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.58 Total: -43.48 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.65 -9.65 -47.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323817152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.564 kcal (2) G-P(sol) polarization free energy of solvation -37.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds