Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99977 * 2 1 4 4 H 1.48496 * 109.46949 * 239.99560 * 3 2 1 5 5 H 1.48497 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46948 * 119.99500 * 3 2 1 7 7 C 1.38799 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99840 * 180.02562 * 7 2 1 9 9 S 1.76191 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00052 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47504 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99772 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00256 * 180.02562 * 11 10 9 14 14 C 1.47534 * 126.98000 * 359.97438 * 13 11 10 15 15 C 1.54157 * 107.06558 * 205.27326 * 14 13 11 16 16 C 1.53925 * 104.86163 * 358.26196 * 15 14 13 17 17 C 1.48248 * 126.98072 * 179.97438 * 13 11 10 18 18 C 1.52294 * 110.57458 * 220.48937 * 16 15 14 19 19 C 1.53182 * 109.37116 * 292.63990 * 18 16 15 20 20 N 1.46856 * 109.41072 * 302.09113 * 19 18 16 21 21 C 1.46896 * 111.00336 * 186.54934 * 20 19 18 22 22 C 1.50704 * 109.47355 * 65.60515 * 21 20 19 23 23 N 1.34774 * 120.00193 * 180.02562 * 22 21 20 24 24 O 1.21279 * 119.99814 * 0.02562 * 22 21 20 25 25 C 1.46861 * 111.33693 * 62.34333 * 20 19 18 26 26 C 1.52296 * 110.57385 * 97.15396 * 16 15 14 27 27 H 0.97007 * 120.00357 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47211 * 60.00065 * 10 9 7 29 29 H 1.09002 * 109.47515 * 300.00212 * 10 9 7 30 30 H 1.09008 * 109.91995 * 85.91897 * 14 13 11 31 31 H 1.09000 * 110.07984 * 324.72061 * 14 13 11 32 32 H 1.09004 * 110.35937 * 117.11107 * 15 14 13 33 33 H 1.09003 * 110.36179 * 239.41394 * 15 14 13 34 34 H 1.09005 * 110.67110 * 259.89355 * 17 13 11 35 35 H 1.09004 * 110.67064 * 22.86163 * 17 13 11 36 36 H 1.09005 * 109.48231 * 52.60889 * 18 16 15 37 37 H 1.08993 * 109.48642 * 172.66579 * 18 16 15 38 38 H 1.09003 * 109.47694 * 182.10795 * 19 18 16 39 39 H 1.08995 * 109.48804 * 62.07364 * 19 18 16 40 40 H 1.08996 * 109.47351 * 185.60633 * 21 20 19 41 41 H 1.08998 * 109.46757 * 305.60575 * 21 20 19 42 42 H 0.97005 * 119.99984 * 0.02562 * 23 22 21 43 43 H 0.96996 * 120.00112 * 179.97438 * 23 22 21 44 44 H 1.09007 * 109.47688 * 177.66762 * 25 20 19 45 45 H 1.09001 * 109.48568 * 57.63994 * 25 20 19 46 46 H 1.09000 * 109.48620 * 187.32479 * 26 16 15 47 47 H 1.08995 * 109.49027 * 307.38723 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7911 -5.5023 -0.0010 13 7 2.8442 -6.3431 0.0003 14 6 4.3181 -6.2789 0.0008 15 6 4.8283 -7.5907 -0.6280 16 6 3.5567 -8.4020 -0.9350 17 6 2.4969 -7.7843 0.0003 18 6 3.7669 -9.8730 -0.6017 19 6 4.7955 -10.4707 -1.5667 20 7 4.3262 -10.2996 -2.9477 21 6 5.2083 -10.9959 -3.8936 22 6 5.1244 -12.4821 -3.6581 23 7 5.8537 -13.3265 -4.4142 24 8 4.4006 -12.9182 -2.7882 25 6 4.1975 -8.8788 -3.2961 26 6 3.1480 -8.2257 -2.3915 27 1 -0.4851 0.8401 -0.0004 28 1 3.1245 -3.7313 0.8906 29 1 3.1245 -3.7313 -0.8894 30 1 4.6856 -6.1898 1.0232 31 1 4.6559 -5.4278 -0.5904 32 1 5.3766 -7.3826 -1.5469 33 1 5.4604 -8.1291 0.0781 34 1 2.5804 -8.2002 1.0045 35 1 1.4933 -7.9383 -0.3962 36 1 4.1314 -9.9655 0.4214 37 1 2.8219 -10.4070 -0.7010 38 1 4.9196 -11.5325 -1.3537 39 1 5.7507 -9.9608 -1.4416 40 1 4.8967 -10.7716 -4.9137 41 1 6.2353 -10.6621 -3.7458 42 1 6.4329 -12.9776 -5.1097 43 1 5.7999 -14.2830 -4.2623 44 1 3.8881 -8.7865 -4.3373 45 1 5.1576 -8.3818 -3.1567 46 1 2.1801 -8.6985 -2.5574 47 1 3.0785 -7.1630 -2.6236 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323817152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = -94.898874 kcal Electronic energy + Delta-G solvation = -27651.830733 eV Core-core repulsion = 23766.247216 eV Total energy + Delta-G solvation = -3885.583517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73689 -40.60493 -39.63037 -37.56034 -34.63903 -34.58858 -34.30168 -31.86925 -31.34576 -30.72223 -29.06769 -27.68506 -26.37770 -24.31786 -24.12351 -22.77327 -21.38583 -20.74601 -19.85476 -19.02636 -18.24946 -18.05161 -17.67322 -17.17864 -16.88633 -16.73515 -16.38499 -16.20751 -15.89005 -15.69546 -15.43701 -15.40194 -14.68564 -14.59968 -14.37973 -14.18008 -14.10411 -13.74000 -13.58874 -13.29788 -13.15299 -12.90419 -12.86178 -12.76345 -12.65953 -12.63146 -12.13911 -12.01697 -11.78243 -11.59422 -11.36370 -11.22688 -11.13017 -10.95298 -10.74353 -10.51084 -10.28901 -9.70875 -9.15629 -8.68793 -8.34452 -6.13719 1.23464 1.44169 1.44746 1.55071 1.56864 1.73847 2.09133 2.27353 2.47814 2.99368 3.11843 3.23169 3.43883 3.57688 3.71433 3.87832 4.07204 4.12613 4.16682 4.22977 4.26609 4.32280 4.37248 4.40133 4.43680 4.54971 4.57175 4.58842 4.69080 4.75789 4.82353 4.84551 4.96945 4.98513 5.05828 5.16373 5.24173 5.24887 5.40825 5.43490 5.46153 5.96848 6.08769 6.18225 6.19251 6.44650 6.59649 7.06071 7.11904 7.46721 8.74596 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.002009 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.712285 B =13934.412414 C =14223.616211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.118 4.118 11 C 0.548 3.452 12 O -0.571 6.571 13 N -0.618 5.618 14 C 0.092 3.908 15 C -0.113 4.113 16 C -0.059 4.059 17 C 0.111 3.889 18 C -0.092 4.092 19 C 0.061 3.939 20 N -0.544 5.544 21 C 0.035 3.965 22 C 0.511 3.489 23 N -0.841 5.841 24 O -0.577 6.577 25 C 0.067 3.933 26 C -0.099 4.099 27 H 0.271 0.729 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.418 0.582 43 H 0.405 0.595 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.271 -25.208 -9.337 34.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.269 4.269 11 C 0.337 3.663 12 O -0.450 6.450 13 N -0.352 5.352 14 C -0.030 4.030 15 C -0.151 4.151 16 C -0.061 4.061 17 C -0.012 4.012 18 C -0.130 4.130 19 C -0.067 4.067 20 N -0.270 5.270 21 C -0.095 4.095 22 C 0.296 3.704 23 N -0.406 5.406 24 O -0.456 6.456 25 C -0.061 4.061 26 C -0.137 4.137 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.142 0.858 41 H 0.107 0.893 42 H 0.249 0.751 43 H 0.236 0.764 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.337 -25.624 -8.784 33.282 hybrid contribution 1.913 1.305 -0.108 2.318 sum 21.250 -24.320 -8.892 33.497 Atomic orbital electron populations 1.70186 1.08027 1.28702 1.47857 1.26160 0.95984 1.03379 0.93670 0.84985 0.77793 0.75531 0.79561 1.18503 1.20394 1.18610 1.23155 0.95332 0.91837 1.59107 0.89856 1.85622 1.10555 0.99290 1.97036 1.23285 1.03356 0.93940 1.06287 1.19752 0.85363 0.85905 0.75288 1.90688 1.17182 1.85741 1.51377 1.48766 1.08045 1.05577 1.72829 1.22436 0.77807 1.00318 1.02393 1.22606 0.96438 0.93622 1.02412 1.21057 0.94764 0.95622 0.94617 1.22572 0.99117 0.79214 1.00270 1.21366 0.99852 0.92441 0.99368 1.22155 0.95990 1.01328 0.87209 1.61447 1.50623 1.12272 1.02667 1.22031 0.98134 0.90001 0.99351 1.20975 0.78620 0.90223 0.80623 1.43744 1.47341 1.10598 1.38896 1.90731 1.40707 1.79509 1.34666 1.22089 0.98238 0.86273 0.99454 1.21371 0.99063 0.99669 0.93638 0.91975 0.87667 0.87540 0.89992 0.90121 0.88999 0.88081 0.89983 0.92439 0.89698 0.92696 0.90579 0.93345 0.85840 0.89261 0.75123 0.76362 0.89785 0.92675 0.92953 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.55 -31.58 9.50 67.95 0.65 -30.94 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 10 C -0.12 -4.91 5.23 71.24 0.37 -4.54 16 11 C 0.55 22.13 7.91 87.66 0.69 22.83 16 12 O -0.57 -28.69 16.07 -3.04 -0.05 -28.73 16 13 N -0.62 -17.88 3.26 -809.96 -2.64 -20.53 16 14 C 0.09 1.75 6.76 86.57 0.59 2.34 16 15 C -0.11 -1.49 5.12 31.30 0.16 -1.33 16 16 C -0.06 -1.06 0.57 -51.91 -0.03 -1.09 16 17 C 0.11 2.78 5.95 86.47 0.51 3.29 16 18 C -0.09 -1.52 4.74 30.42 0.14 -1.38 16 19 C 0.06 0.90 4.95 86.37 0.43 1.33 16 20 N -0.54 -8.14 4.38 -900.29 -3.94 -12.08 16 21 C 0.04 0.31 5.45 85.56 0.47 0.77 16 22 C 0.51 6.62 7.77 87.66 0.68 7.31 16 23 N -0.84 -3.72 8.87 -173.53 -1.54 -5.26 16 24 O -0.58 -13.71 15.16 -3.03 -0.05 -13.75 16 25 C 0.07 0.90 5.30 86.37 0.46 1.36 16 26 C -0.10 -1.96 4.79 30.42 0.15 -1.81 16 27 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 28 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 29 H 0.11 4.01 7.92 -2.39 -0.02 3.99 16 30 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.08 1.48 7.55 -2.39 -0.02 1.46 16 32 H 0.09 0.98 6.29 -2.39 -0.02 0.96 16 33 H 0.10 0.93 7.75 -2.39 -0.02 0.91 16 34 H 0.08 1.85 8.02 -2.38 -0.02 1.83 16 35 H 0.06 1.77 7.75 -2.39 -0.02 1.75 16 36 H 0.08 1.14 8.04 -2.38 -0.02 1.13 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.44 5.76 -2.39 -0.01 1.43 16 39 H 0.05 0.53 7.57 -2.39 -0.02 0.52 16 40 H 0.12 0.59 7.98 -2.39 -0.02 0.58 16 41 H 0.09 0.33 8.13 -2.39 -0.02 0.31 16 42 H 0.42 -1.09 8.83 -92.70 -0.82 -1.91 16 43 H 0.41 1.63 8.93 -92.71 -0.83 0.81 16 44 H 0.08 1.02 8.00 -2.38 -0.02 1.00 16 45 H 0.06 0.56 6.61 -2.39 -0.02 0.55 16 46 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -87.23 383.89 -1.99 -89.21 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -0.65 Total: 12.28 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 5.73 Total: -0.66 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -7.84 Total: -94.20 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.09 Total: -42.49 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -87.23 -1.99 -89.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323817152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.687 kcal (2) G-P(sol) polarization free energy of solvation -87.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds