Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48500 * 109.46805 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.46956 * 119.99985 * 3 2 1 6 6 H 1.48500 * 109.46857 * 240.00184 * 3 2 1 7 7 C 1.38811 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99997 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00008 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47109 * 175.01078 * 10 9 7 12 12 H 1.08989 * 109.87856 * 306.81281 * 11 10 9 13 13 C 1.54333 * 109.88069 * 67.98876 * 11 10 9 14 14 C 1.55150 * 102.94611 * 141.61018 * 13 11 10 15 15 C 1.54915 * 101.58078 * 324.49524 * 14 13 11 16 16 N 1.47019 * 109.88318 * 185.78977 * 11 10 9 17 17 C 1.34777 * 125.64738 * 61.60875 * 16 11 10 18 18 O 1.21519 * 120.00131 * 5.34561 * 17 16 11 19 19 C 1.48168 * 119.99880 * 185.33993 * 17 16 11 20 20 C 1.39241 * 119.68048 * 180.02562 * 19 17 16 21 21 C 1.38715 * 119.18711 * 179.97438 * 20 19 17 22 22 C 1.38410 * 118.55446 * 359.97438 * 21 20 19 23 23 C 1.39264 * 119.29959 * 0.02562 * 22 21 20 24 24 N 1.39818 * 119.61671 * 180.02562 * 23 22 21 25 25 C 1.35843 * 126.10280 * 179.71275 * 24 23 22 26 26 C 1.35285 * 107.61463 * 179.87373 * 25 24 23 27 27 C 1.39954 * 107.96622 * 0.39305 * 26 25 24 28 28 N 1.30815 * 108.37128 * 359.75624 * 27 26 25 29 29 N 1.31979 * 120.76604 * 359.74638 * 23 22 21 30 30 H 0.97001 * 119.99625 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00317 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47078 * 295.01456 * 10 9 7 33 33 H 1.09000 * 109.47173 * 55.01502 * 10 9 7 34 34 H 1.09005 * 110.71593 * 259.97224 * 13 11 10 35 35 H 1.09001 * 110.71836 * 23.23789 * 13 11 10 36 36 H 1.08995 * 111.00530 * 206.42792 * 14 13 11 37 37 H 1.08992 * 111.00600 * 82.56643 * 14 13 11 38 38 H 1.09003 * 110.36804 * 278.17593 * 15 14 13 39 39 H 1.08998 * 110.46211 * 155.89202 * 15 14 13 40 40 H 1.07998 * 120.40959 * 359.95615 * 20 19 17 41 41 H 1.07998 * 120.72093 * 180.02562 * 21 20 19 42 42 H 1.07995 * 120.34878 * 180.02562 * 22 21 20 43 43 H 1.08000 * 126.19424 * 359.97438 * 25 24 23 44 44 H 1.07993 * 126.01754 * 180.14198 * 26 25 24 45 45 H 1.08001 * 125.81552 * 179.78848 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0688 -4.8169 0.1249 12 1 0.4248 -4.6628 0.9906 13 6 0.2152 -4.9196 -1.1568 14 6 0.0792 -6.4515 -1.3620 15 6 1.4617 -6.9542 -0.8766 16 7 1.7999 -6.0847 0.2650 17 6 2.6408 -6.3996 1.2701 18 8 2.7725 -5.6429 2.2117 19 6 3.4044 -7.6686 1.2270 20 6 4.2709 -7.9876 2.2693 21 6 4.9803 -9.1785 2.2188 22 6 4.7991 -10.0108 1.1278 23 6 3.9165 -9.6307 0.1198 24 7 3.7279 -10.4667 -0.9849 25 6 2.8999 -10.2302 -2.0356 26 6 3.0104 -11.2754 -2.8873 27 6 3.9248 -12.1830 -2.3405 28 7 4.3545 -11.7006 -1.2030 29 7 3.2519 -8.4931 0.1979 30 1 -0.4849 -0.8401 -0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6162 -3.7541 -0.9318 33 1 2.7502 -3.6768 0.8414 34 1 -0.7628 -4.4624 -1.0063 35 1 0.7305 -4.4615 -2.0010 36 1 -0.0769 -6.6924 -2.4135 37 1 -0.7227 -6.8585 -0.7462 38 1 2.2037 -6.8470 -1.6679 39 1 1.3979 -7.9939 -0.5556 40 1 4.3894 -7.3159 3.1067 41 1 5.6587 -9.4507 3.0138 42 1 5.3364 -10.9451 1.0590 43 1 2.2690 -9.3637 -2.1679 44 1 2.4827 -11.3913 -3.8223 45 1 4.2250 -13.1215 -2.7826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324225072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 123.245702 kcal Electronic energy + Delta-G solvation = -29215.299293 eV Core-core repulsion = 25236.024034 eV Total energy + Delta-G solvation = -3979.275259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.98035 -40.81963 -39.52119 -37.47894 -34.80980 -34.04525 -33.32104 -31.51188 -31.35384 -30.75440 -29.84581 -28.52024 -25.62593 -24.62703 -24.48451 -23.08240 -22.27223 -21.73111 -21.32446 -20.68235 -19.49587 -18.38224 -17.73712 -17.09422 -16.58771 -16.41043 -16.06357 -15.89941 -15.48516 -14.99242 -14.68060 -14.37610 -14.09840 -13.81560 -13.69487 -13.65176 -13.47985 -13.36064 -13.13578 -12.96142 -12.71800 -12.59822 -12.20321 -11.73389 -11.33591 -11.26017 -10.88726 -10.77744 -10.64851 -10.57030 -10.54584 -10.36545 -10.31563 -9.95580 -9.74297 -9.59496 -9.17807 -8.83287 -8.75372 -8.48700 -6.96110 -6.06110 -3.05166 0.13216 0.45059 1.61607 1.65060 2.35947 2.62773 2.82220 3.51377 3.55213 3.59528 3.67268 3.76508 3.98234 4.31226 4.46277 4.52812 4.59744 4.62464 4.73351 4.76436 4.85816 4.96696 5.03974 5.10598 5.25025 5.36583 5.45875 5.49729 5.53028 5.64435 5.65830 5.69907 5.77098 5.85539 5.91499 5.93349 6.01001 6.06942 6.10736 6.32112 6.41309 6.62768 6.73824 6.85077 6.88641 7.34634 7.52177 7.85788 8.09477 8.80097 9.26880 10.12997 10.27913 11.42659 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.002604 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.197053 B =10750.009089 C =11654.911282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.046 4.046 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.326 4.326 8 H 0.063 0.937 9 N -0.738 5.738 10 C 0.153 3.847 11 C 0.128 3.872 12 H 0.079 0.921 13 C -0.122 4.122 14 C -0.139 4.139 15 C 0.109 3.891 16 N -0.589 5.589 17 C 0.580 3.420 18 O -0.515 6.515 19 C 0.125 3.875 20 C -0.123 4.123 21 C -0.056 4.056 22 C -0.146 4.146 23 C 0.366 3.634 24 N -0.326 5.326 25 C 0.079 3.921 26 C -0.264 4.264 27 C 0.065 3.935 28 N -0.286 5.286 29 N -0.478 5.478 30 H 0.254 0.746 31 H 0.367 0.633 32 H 0.017 0.983 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.183 0.817 44 H 0.158 0.842 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 -28.325 -3.485 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.243 4.243 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.457 4.457 8 H 0.081 0.919 9 N -0.384 5.384 10 C 0.025 3.975 11 C 0.025 3.975 12 H 0.097 0.903 13 C -0.160 4.160 14 C -0.177 4.177 15 C -0.014 4.014 16 N -0.322 5.322 17 C 0.365 3.635 18 O -0.390 6.390 19 C -0.015 4.015 20 C -0.144 4.144 21 C -0.082 4.082 22 C -0.168 4.168 23 C 0.136 3.864 24 N -0.104 5.104 25 C -0.062 4.062 26 C -0.293 4.293 27 C -0.124 4.124 28 N -0.105 5.105 29 N -0.194 5.194 30 H 0.065 0.935 31 H 0.200 0.800 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.176 0.824 41 H 0.171 0.829 42 H 0.170 0.830 43 H 0.200 0.800 44 H 0.175 0.825 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 6.552 -26.123 -2.505 27.048 hybrid contribution -0.019 -1.884 -0.259 1.902 sum 6.533 -28.007 -2.764 28.891 Atomic orbital electron populations 1.70888 1.05973 1.28280 1.53959 1.25772 0.97080 1.00911 1.00560 0.83234 0.74199 0.75555 0.75870 1.21008 1.22267 1.22304 1.20014 0.92014 0.85656 1.48050 0.91867 1.42194 1.04750 1.00637 1.90860 1.20865 0.93481 0.84685 0.98508 1.21930 0.93691 0.83279 0.98604 0.90278 1.22684 1.00552 0.95442 0.97309 1.22893 0.96725 0.96329 1.01780 1.22545 0.95652 0.95064 0.88162 1.48283 1.43446 1.17346 1.23122 1.17358 0.79476 0.84446 0.82186 1.90871 1.65030 1.50152 1.32965 1.20929 0.96632 0.93652 0.90247 1.22205 0.95095 0.97594 0.99539 1.21578 0.97084 0.92345 0.97149 1.21812 0.99191 1.02357 0.93465 1.17649 0.94103 0.88355 0.86259 1.45767 1.33618 1.15511 1.15518 1.23005 0.94975 1.00781 0.87456 1.21697 1.07273 0.96309 1.03991 1.24173 0.95704 1.00198 0.92280 1.77445 1.20149 0.93405 1.19493 1.67004 1.23674 1.02841 1.25911 0.93504 0.80031 0.96576 0.94590 0.89871 0.89884 0.89873 0.90853 0.91462 0.89152 0.82424 0.82872 0.83010 0.79996 0.82473 0.78972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.80 13.70 55.49 0.76 -29.04 16 2 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 3 Si 1.08 26.77 29.92 -169.99 -5.09 21.68 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.33 -9.66 9.99 -15.06 -0.15 -9.81 16 8 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.74 -19.49 5.46 -59.91 -0.33 -19.82 16 10 C 0.15 3.41 5.67 -4.04 -0.02 3.39 16 11 C 0.13 2.26 2.91 -66.95 -0.19 2.06 16 12 H 0.08 1.52 8.14 -51.94 -0.42 1.09 16 13 C -0.12 -1.77 6.13 -24.90 -0.15 -1.92 16 14 C -0.14 -1.49 7.09 -24.58 -0.17 -1.66 16 15 C 0.11 1.28 5.56 -2.52 -0.01 1.26 16 16 N -0.59 -9.15 3.07 -163.99 -0.50 -9.65 16 17 C 0.58 9.52 7.55 -12.18 -0.09 9.43 16 18 O -0.52 -10.21 15.50 5.35 0.08 -10.13 16 19 C 0.12 1.63 6.72 -83.02 -0.56 1.08 16 20 C -0.12 -1.31 9.63 -39.03 -0.38 -1.69 16 21 C -0.06 -0.44 10.16 -39.34 -0.40 -0.84 16 22 C -0.15 -1.33 9.70 -39.14 -0.38 -1.71 16 23 C 0.37 4.03 7.55 -154.53 -1.17 2.86 16 24 N -0.33 -3.43 3.81 -12.09 -0.05 -3.48 16 25 C 0.08 0.70 11.10 -16.83 -0.19 0.51 16 26 C -0.26 -1.88 10.80 -39.99 -0.43 -2.31 16 27 C 0.07 0.48 12.02 -17.34 -0.21 0.27 16 28 N -0.29 -2.86 11.83 30.64 0.36 -2.50 16 29 N -0.48 -5.69 6.22 -8.85 -0.06 -5.74 16 30 H 0.25 7.84 6.77 -40.82 -0.28 7.56 16 31 H 0.37 9.64 6.32 -40.82 -0.26 9.38 16 32 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 33 H 0.04 0.90 6.87 -51.93 -0.36 0.54 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.29 7.75 -51.93 -0.40 0.89 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.98 5.84 -51.93 -0.30 0.67 16 40 H 0.16 1.62 7.63 -52.49 -0.40 1.22 16 41 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.15 1.19 7.68 -52.49 -0.40 0.79 16 43 H 0.18 1.33 7.47 -52.49 -0.39 0.94 16 44 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.19 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -36.88 375.96 -9.55 -46.43 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.80 Total: 7.15 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -4.60 Total: -0.56 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: 0.19 Total: -70.23 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 26.77 SS G_CDS: -5.09 Total: 21.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.88 -9.55 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324225072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.674 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds