Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48500 * 109.47012 * 267.58025 * 3 2 1 5 5 H 1.48504 * 109.46662 * 27.58008 * 3 2 1 6 6 H 1.48493 * 109.46900 * 147.57702 * 3 2 1 7 7 C 1.38815 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99854 * 0.11461 * 7 2 1 9 9 N 1.36936 * 120.00077 * 180.11757 * 7 2 1 10 10 C 1.46494 * 120.00312 * 172.07415 * 9 7 2 11 11 C 1.53002 * 109.47279 * 184.30306 * 10 9 7 12 12 H 1.08990 * 109.99637 * 54.52107 * 11 10 9 13 13 C 1.54326 * 109.88253 * 293.42505 * 11 10 9 14 14 C 1.55154 * 102.93953 * 218.39162 * 13 11 10 15 15 C 1.54683 * 101.68087 * 35.33400 * 14 13 11 16 16 N 1.47024 * 109.88253 * 175.61680 * 11 10 9 17 17 C 1.34776 * 125.64827 * 298.32644 * 16 11 10 18 18 O 1.21517 * 119.99922 * 354.78689 * 17 16 11 19 19 C 1.48167 * 120.00015 * 174.79585 * 17 16 11 20 20 C 1.39233 * 119.68464 * 179.97438 * 19 17 16 21 21 C 1.38712 * 119.19211 * 179.97438 * 20 19 17 22 22 C 1.38412 * 118.54977 * 359.97438 * 21 20 19 23 23 C 1.39259 * 119.30340 * 0.02562 * 22 21 20 24 24 N 1.39821 * 119.61884 * 179.97438 * 23 22 21 25 25 C 1.35845 * 126.10085 * 180.02562 * 24 23 22 26 26 C 1.35274 * 107.61051 * 180.02562 * 25 24 23 27 27 C 1.39954 * 107.97053 * 359.97438 * 26 25 24 28 28 N 1.30811 * 108.36889 * 359.72407 * 27 26 25 29 29 N 1.31983 * 120.76262 * 359.97438 * 23 22 21 30 30 H 0.97006 * 119.99909 * 0.02562 * 1 2 3 31 31 H 0.97010 * 119.99641 * 352.07877 * 9 7 2 32 32 H 1.09002 * 109.47033 * 64.30083 * 10 9 7 33 33 H 1.09003 * 109.47334 * 304.30558 * 10 9 7 34 34 H 1.09007 * 110.71887 * 336.75358 * 13 11 10 35 35 H 1.08994 * 110.71702 * 100.02257 * 13 11 10 36 36 H 1.09000 * 111.00623 * 153.57758 * 14 13 11 37 37 H 1.09000 * 111.00136 * 277.42641 * 14 13 11 38 38 H 1.09001 * 110.39477 * 204.36444 * 15 14 13 39 39 H 1.09007 * 110.23701 * 82.11112 * 15 14 13 40 40 H 1.08003 * 120.40732 * 0.02562 * 20 19 17 41 41 H 1.07997 * 120.72771 * 179.72671 * 21 20 19 42 42 H 1.08004 * 120.34784 * 179.97438 * 22 21 20 43 43 H 1.08001 * 126.19613 * 359.97438 * 25 24 23 44 44 H 1.08002 * 126.01666 * 179.97438 * 26 25 24 45 45 H 1.08006 * 125.81811 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5490 2.0168 -1.3988 5 1 1.4230 2.6668 0.6483 6 1 3.5212 1.4553 0.7506 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 -0.0009 9 7 3.3796 -1.2023 0.0030 10 6 4.1117 -2.4590 0.1785 11 6 5.6124 -2.1692 0.2502 12 1 5.8133 -1.4348 1.0300 13 6 6.1102 -1.6391 -1.1109 14 6 7.5030 -2.3073 -1.2556 15 6 7.2597 -3.6847 -0.5950 16 7 6.3484 -3.4106 0.5309 17 6 6.2161 -4.1693 1.6370 18 8 5.5059 -3.7949 2.5491 19 6 6.9368 -5.4597 1.7408 20 6 6.7958 -6.2380 2.8866 21 6 7.4747 -7.4445 2.9728 22 6 8.2716 -7.8325 1.9097 23 6 8.3681 -7.0060 0.7930 24 7 9.1717 -7.3913 -0.2845 25 6 9.3609 -6.6903 -1.4326 26 6 10.2036 -7.4042 -2.2138 27 6 10.5416 -8.5756 -1.5264 28 7 9.9301 -8.5660 -0.3701 29 7 7.7099 -5.8633 0.7400 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3701 -0.1115 32 1 3.9089 -3.1185 -0.6653 33 1 3.7902 -2.9410 1.1018 34 1 5.4453 -1.9556 -1.9146 35 1 6.2035 -0.5534 -1.0911 36 1 7.7761 -2.4181 -2.3050 37 1 8.2637 -1.7464 -0.7127 38 1 8.1982 -4.1022 -0.2304 39 1 6.7910 -4.3660 -1.3052 40 1 6.1648 -5.9067 3.6982 41 1 7.3867 -8.0657 3.8518 42 1 8.8135 -8.7661 1.9461 43 1 8.9182 -5.7362 -1.6777 44 1 10.5538 -7.1203 -3.1952 45 1 11.1988 -9.3529 -1.8874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324225073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 126.889160 kcal Electronic energy + Delta-G solvation = -29244.136413 eV Core-core repulsion = 25265.019146 eV Total energy + Delta-G solvation = -3979.117266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.98073 -40.82761 -39.54354 -37.50947 -34.72541 -34.04370 -33.29585 -31.58095 -31.40696 -30.75904 -29.87345 -29.10915 -25.68913 -25.00682 -24.48860 -23.00272 -21.91782 -21.70405 -21.32555 -20.64841 -19.57969 -18.40493 -17.89616 -17.22328 -16.61976 -16.41415 -16.06355 -15.91537 -15.35897 -14.97074 -14.59823 -14.44000 -14.15882 -13.96174 -13.74240 -13.67727 -13.46045 -13.20764 -13.04202 -12.97470 -12.63279 -12.59157 -12.33650 -11.73053 -11.37558 -11.28002 -11.17872 -10.92665 -10.88337 -10.68242 -10.56129 -10.44957 -10.34857 -10.11822 -9.75598 -9.59551 -9.56641 -8.82436 -8.75866 -8.51565 -7.19043 -5.73356 -3.09762 0.13458 0.45234 1.61715 1.65221 2.35915 2.62171 2.80137 3.39139 3.43373 3.47519 3.51238 3.66874 3.98207 4.30513 4.46501 4.52926 4.57883 4.61377 4.62525 4.74066 4.84418 4.94566 5.01126 5.10593 5.24899 5.30631 5.41447 5.49622 5.52855 5.56737 5.59862 5.66484 5.72013 5.75599 5.87092 5.90573 5.96307 6.00605 6.10473 6.26654 6.36504 6.62777 6.70630 6.84473 6.87204 7.34472 7.49760 8.02484 8.09668 8.45250 9.24123 9.95678 10.16042 11.45031 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.002718 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.057341 B =10300.874090 C =11284.573641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.089 0.911 9 N -0.749 5.749 10 C 0.151 3.849 11 C 0.125 3.875 12 H 0.079 0.921 13 C -0.125 4.125 14 C -0.139 4.139 15 C 0.109 3.891 16 N -0.590 5.590 17 C 0.580 3.420 18 O -0.514 6.514 19 C 0.124 3.876 20 C -0.122 4.122 21 C -0.056 4.056 22 C -0.146 4.146 23 C 0.365 3.635 24 N -0.326 5.326 25 C 0.079 3.921 26 C -0.265 4.265 27 C 0.065 3.935 28 N -0.286 5.286 29 N -0.478 5.478 30 H 0.259 0.741 31 H 0.359 0.641 32 H 0.025 0.975 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.183 0.817 44 H 0.157 0.843 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.102 -17.014 -1.873 31.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.107 0.893 9 N -0.395 5.395 10 C 0.023 3.977 11 C 0.022 3.978 12 H 0.098 0.902 13 C -0.163 4.163 14 C -0.177 4.177 15 C -0.014 4.014 16 N -0.323 5.323 17 C 0.366 3.634 18 O -0.389 6.389 19 C -0.015 4.015 20 C -0.144 4.144 21 C -0.082 4.082 22 C -0.168 4.168 23 C 0.136 3.864 24 N -0.104 5.104 25 C -0.062 4.062 26 C -0.293 4.293 27 C -0.124 4.124 28 N -0.105 5.105 29 N -0.194 5.194 30 H 0.069 0.931 31 H 0.191 0.809 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.176 0.824 41 H 0.171 0.829 42 H 0.170 0.830 43 H 0.200 0.800 44 H 0.175 0.825 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 25.264 -16.971 -0.863 30.447 hybrid contribution 0.617 1.100 -0.279 1.291 sum 25.881 -15.871 -1.142 30.381 Atomic orbital electron populations 1.69708 1.05116 1.25812 1.57537 1.24706 0.95249 0.97207 1.01927 0.86572 0.79485 0.84944 0.77748 1.21019 1.21712 1.20144 1.19023 0.80394 0.94725 1.42959 0.89327 1.42484 1.04008 1.03577 1.89428 1.20920 0.87578 0.89899 0.99306 1.21949 0.93343 0.85105 0.97373 0.90249 1.22722 0.95988 1.00939 0.96675 1.22857 0.97749 0.95910 1.01233 1.22492 0.94205 0.96708 0.87972 1.48256 1.40601 1.24875 1.18527 1.17351 0.81645 0.82489 0.81892 1.90876 1.39148 1.71142 1.37684 1.20911 0.94869 0.95649 0.90060 1.22208 0.99370 0.94090 0.98709 1.21580 0.93066 0.95307 0.98203 1.21815 1.00945 1.01447 0.92595 1.17642 0.91652 0.90939 0.86149 1.45767 1.35556 1.16538 1.12541 1.22997 0.98244 0.98945 0.86026 1.21694 1.06777 0.97266 1.03551 1.24173 0.98305 0.98537 0.91355 1.77445 1.10430 1.01348 1.21259 1.66997 1.08461 1.14029 1.29941 0.93068 0.80867 0.95729 0.93875 0.89565 0.90034 0.89804 0.90920 0.89190 0.91345 0.82390 0.82872 0.83022 0.79991 0.82488 0.78984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.99 13.97 55.49 0.78 -29.22 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.41 27.60 -169.99 -4.69 17.72 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.64 6.73 56.52 0.38 -6.26 16 7 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 N -0.75 -18.47 5.22 -59.91 -0.31 -18.79 16 10 C 0.15 3.18 5.65 -4.04 -0.02 3.16 16 11 C 0.13 2.08 2.93 -66.95 -0.20 1.88 16 12 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.13 -1.66 6.08 -24.90 -0.15 -1.81 16 14 C -0.14 -1.37 7.07 -24.71 -0.17 -1.54 16 15 C 0.11 1.20 5.53 -2.65 -0.01 1.19 16 16 N -0.59 -8.69 3.07 -164.14 -0.50 -9.19 16 17 C 0.58 9.16 7.56 -12.18 -0.09 9.07 16 18 O -0.51 -9.84 15.50 5.35 0.08 -9.76 16 19 C 0.12 1.58 6.71 -83.03 -0.56 1.02 16 20 C -0.12 -1.27 9.63 -39.04 -0.38 -1.64 16 21 C -0.06 -0.43 10.16 -39.34 -0.40 -0.83 16 22 C -0.15 -1.30 9.70 -39.14 -0.38 -1.68 16 23 C 0.37 3.92 7.55 -154.52 -1.17 2.76 16 24 N -0.33 -3.35 3.81 -12.10 -0.05 -3.39 16 25 C 0.08 0.67 11.10 -16.83 -0.19 0.49 16 26 C -0.26 -1.82 10.80 -39.99 -0.43 -2.25 16 27 C 0.06 0.46 12.02 -17.34 -0.21 0.25 16 28 N -0.29 -2.81 11.83 30.64 0.36 -2.45 16 29 N -0.48 -5.50 6.23 -8.85 -0.06 -5.55 16 30 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 31 H 0.36 8.43 5.48 -40.82 -0.22 8.21 16 32 H 0.02 0.52 8.04 -51.93 -0.42 0.11 16 33 H 0.04 1.02 6.91 -51.93 -0.36 0.67 16 34 H 0.09 1.21 7.78 -51.93 -0.40 0.80 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.92 5.91 -51.93 -0.31 0.61 16 39 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.16 1.57 7.63 -52.48 -0.40 1.17 16 41 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.15 1.17 7.68 -52.48 -0.40 0.77 16 43 H 0.18 1.26 7.50 -52.49 -0.39 0.86 16 44 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.19 0.66 8.06 -52.48 -0.42 0.24 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -36.57 374.83 -9.22 -45.79 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.87 Total: 6.33 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -4.61 Total: 2.87 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: 0.22 Total: -68.59 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.69 Total: 17.72 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.57 -9.22 -45.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324225073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.675 kcal (2) G-P(sol) polarization free energy of solvation -36.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds