Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99953 * 2 1 4 4 H 1.48505 * 109.46860 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46960 * 300.00071 * 3 2 1 6 6 H 1.48494 * 109.47264 * 60.00284 * 3 2 1 7 7 C 1.38814 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99614 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00400 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00268 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47467 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.01723 * 306.39280 * 11 10 9 13 13 C 1.54266 * 110.03313 * 67.82827 * 11 10 9 14 14 C 1.55030 * 104.27895 * 142.80312 * 13 11 10 15 15 C 1.54882 * 102.68758 * 322.23955 * 14 13 11 16 16 H 1.09005 * 110.48247 * 279.02681 * 15 14 13 17 17 N 1.46497 * 110.49044 * 156.51778 * 15 14 13 18 18 C 1.34767 * 120.00425 * 88.24015 * 17 15 14 19 19 O 1.21554 * 120.00109 * 0.02562 * 18 17 15 20 20 C 1.47840 * 120.00357 * 180.02562 * 18 17 15 21 21 C 1.40593 * 120.27695 * 359.71866 * 20 18 17 22 22 N 1.30817 * 121.52011 * 180.27660 * 21 20 18 23 23 C 1.33758 * 121.79992 * 0.02562 * 22 21 20 24 24 N 1.33887 * 120.61450 * 179.97438 * 23 22 21 25 25 C 1.31336 * 119.84550 * 180.02562 * 24 23 22 26 26 C 1.39759 * 120.77119 * 359.97438 * 25 24 23 27 27 N 1.31301 * 120.55985 * 0.02562 * 26 25 24 28 28 C 1.33668 * 119.70684 * 359.97438 * 27 26 25 29 29 C 1.38915 * 120.28146 * 180.02562 * 20 18 17 30 30 C 1.53871 * 110.03688 * 184.99853 * 11 10 9 31 31 H 0.97002 * 120.00419 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99367 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.47251 * 60.00056 * 10 9 7 34 34 H 1.09003 * 109.46821 * 300.00095 * 10 9 7 35 35 H 1.08997 * 110.49344 * 261.57764 * 13 11 10 36 36 H 1.09000 * 110.48413 * 24.09096 * 13 11 10 37 37 H 1.08998 * 110.87560 * 203.90160 * 14 13 11 38 38 H 1.09003 * 110.69191 * 80.49236 * 14 13 11 39 39 H 0.97006 * 119.99458 * 268.23980 * 17 15 14 40 40 H 1.07997 * 119.24438 * 0.27354 * 21 20 18 41 41 H 1.07996 * 119.60880 * 180.02562 * 25 24 23 42 42 H 1.08003 * 119.71483 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.99299 * 359.73836 * 29 20 18 44 44 H 1.09003 * 110.03145 * 121.42862 * 30 11 10 45 45 H 1.09001 * 110.02827 * 359.97438 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3591 -4.7087 0.8230 13 6 0.3051 -4.8657 -1.3436 14 6 0.1434 -6.3788 -1.6398 15 6 1.4879 -6.9678 -1.1455 16 1 2.2645 -6.8293 -1.8977 17 7 1.3372 -8.3886 -0.8217 18 6 1.5140 -9.3204 -1.7790 19 8 1.7990 -8.9822 -2.9112 20 6 1.3614 -10.7542 -1.4523 21 6 1.0376 -11.1524 -0.1434 22 7 0.9020 -12.4142 0.1737 23 6 1.0642 -13.3890 -0.7278 24 7 0.9201 -14.6730 -0.3770 25 6 1.0833 -15.6180 -1.2743 26 6 1.4062 -15.3004 -2.5965 27 7 1.5530 -14.0490 -2.9658 28 6 1.3916 -13.0706 -2.0694 29 6 1.5429 -11.7196 -2.4346 30 6 1.8157 -6.1562 0.1248 31 1 -0.4851 0.8400 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 2.6846 -3.7146 0.8894 34 1 2.6846 -3.7145 -0.8906 35 1 -0.6702 -4.3888 -1.2473 36 1 0.8886 -4.3838 -2.1282 37 1 0.0144 -6.5539 -2.7079 38 1 -0.6913 -6.7947 -1.0755 39 1 1.1101 -8.6585 0.0820 40 1 0.8977 -10.3992 0.6178 41 1 0.9658 -16.6525 -0.9873 42 1 1.5361 -16.0912 -3.3206 43 1 1.7927 -11.4419 -3.4479 44 1 1.4755 -6.6942 1.0097 45 1 2.8891 -5.9764 0.1859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332274160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = 56.627386 kcal Electronic energy + Delta-G solvation = -27634.205426 eV Core-core repulsion = 23652.041380 eV Total energy + Delta-G solvation = -3982.164046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.30064 -40.43982 -38.80578 -37.96011 -35.63145 -34.98092 -33.63181 -32.55489 -31.85419 -30.97020 -28.82624 -28.04787 -26.42532 -25.70526 -24.38092 -23.41134 -22.27989 -22.16758 -20.67346 -19.93133 -19.51936 -18.92319 -18.40441 -17.07254 -16.99898 -16.53262 -16.20701 -15.71800 -15.42125 -15.22056 -14.94331 -14.84147 -14.33608 -13.97347 -13.72930 -13.50997 -13.40328 -13.29136 -13.22496 -12.79578 -12.46791 -12.35309 -12.22755 -11.78533 -11.51592 -11.35582 -11.08402 -10.87039 -10.74373 -10.66777 -10.38692 -10.33408 -10.15736 -9.96992 -9.90599 -9.83576 -9.67036 -9.39427 -9.25219 -8.85604 -6.89495 -5.75208 -3.03257 -0.72437 -0.41997 1.10468 1.75795 2.61844 2.70475 2.84723 3.33053 3.39382 3.39704 3.44262 3.50010 3.52148 3.90292 3.96944 4.11685 4.24475 4.34642 4.58387 4.60425 4.62766 4.76019 4.89656 4.99540 5.15556 5.27448 5.46712 5.52658 5.53371 5.58351 5.62992 5.66410 5.82965 5.86160 6.04310 6.11203 6.25699 6.26927 6.27661 6.39576 6.53288 6.63166 6.78466 6.80822 6.93332 7.11345 7.24576 7.72122 7.78889 8.44080 9.55361 10.14211 10.48723 11.47829 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.042353 B = 0.001606 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.958152 B =17427.761341 C =17653.887755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.111 4.111 14 C -0.134 4.134 15 C 0.139 3.861 16 H 0.099 0.901 17 N -0.712 5.712 18 C 0.564 3.436 19 O -0.524 6.524 20 C -0.178 4.178 21 C 0.192 3.808 22 N -0.454 5.454 23 C 0.272 3.728 24 N -0.418 5.418 25 C 0.115 3.885 26 C 0.074 3.926 27 N -0.404 5.404 28 C 0.018 3.982 29 C 0.041 3.959 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.020 0.980 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.399 0.601 40 H 0.176 0.824 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.168 0.832 44 H 0.067 0.933 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -33.812 -2.739 33.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.035 3.965 16 H 0.117 0.883 17 N -0.363 5.363 18 C 0.349 3.651 19 O -0.400 6.400 20 C -0.185 4.185 21 C 0.014 3.986 22 N -0.163 5.163 23 C 0.033 3.967 24 N -0.133 5.133 25 C -0.065 4.065 26 C -0.102 4.102 27 N -0.119 5.119 28 C -0.108 4.108 29 C 0.013 3.987 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.235 0.765 40 H 0.193 0.807 41 H 0.203 0.797 42 H 0.202 0.798 43 H 0.185 0.815 44 H 0.086 0.914 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.330 -33.522 -2.636 33.652 hybrid contribution 0.192 0.932 -0.320 1.004 sum 1.522 -32.590 -2.956 32.759 Atomic orbital electron populations 1.69665 1.05094 1.25471 1.58018 1.24730 0.95517 0.97661 1.03158 0.86128 0.78795 0.84194 0.77162 1.20584 1.21897 1.21913 1.19288 0.91068 0.84255 1.42327 0.91191 1.42354 1.05880 0.99965 1.89406 1.20798 0.93044 0.85382 0.97672 1.21884 0.97733 0.93690 0.98202 0.90654 1.22344 1.01136 0.94058 0.97344 1.22928 0.96386 0.96658 1.01273 1.22070 0.98849 0.77322 0.98249 0.88343 1.46058 1.70806 1.06983 1.12451 1.17793 0.77598 0.84371 0.85388 1.90835 1.47142 1.81694 1.20374 1.21205 1.06302 0.95388 0.95594 1.23319 0.88900 0.92411 0.93921 1.67478 1.14340 0.99759 1.34714 1.20106 0.96031 0.92140 0.88463 1.68362 1.10536 0.98760 1.35622 1.24391 0.91716 1.00322 0.90036 1.24285 0.94932 0.94360 0.96670 1.68627 1.08425 1.00375 1.34442 1.20217 1.03227 0.95003 0.92341 1.21834 0.87458 0.88473 1.00888 1.22416 1.01640 0.95902 0.96030 0.93617 0.78263 0.96530 0.96241 0.91132 0.90801 0.91288 0.91432 0.76547 0.80670 0.79658 0.79781 0.81469 0.91387 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.29 5.45 -59.92 -0.33 -18.61 16 10 C 0.16 3.08 5.31 -4.05 -0.02 3.06 16 11 C -0.10 -1.42 2.96 -89.50 -0.27 -1.69 16 12 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.11 -1.63 6.09 -25.00 -0.15 -1.78 16 14 C -0.13 -1.60 6.59 -24.67 -0.16 -1.76 16 15 C 0.14 1.52 3.18 -66.28 -0.21 1.31 16 16 H 0.10 1.25 7.61 -51.93 -0.40 0.85 16 17 N -0.71 -6.12 5.12 -53.15 -0.27 -6.40 16 18 C 0.56 5.82 7.78 -12.34 -0.10 5.72 16 19 O -0.52 -7.35 16.06 5.32 0.09 -7.26 16 20 C -0.18 -1.54 5.89 -104.83 -0.62 -2.16 16 21 C 0.19 1.46 10.69 -17.10 -0.18 1.28 16 22 N -0.45 -4.63 10.39 -12.28 -0.13 -4.76 16 23 C 0.27 2.81 7.60 -157.60 -1.20 1.62 16 24 N -0.42 -3.86 10.55 -12.39 -0.13 -3.99 16 25 C 0.11 0.55 11.21 -17.20 -0.19 0.35 16 26 C 0.07 0.34 11.22 -17.21 -0.19 0.15 16 27 N -0.40 -3.34 10.46 -10.77 -0.11 -3.45 16 28 C 0.02 0.18 6.59 -84.78 -0.56 -0.38 16 29 C 0.04 0.38 9.68 -38.38 -0.37 0.01 16 30 C -0.12 -1.34 6.19 -25.62 -0.16 -1.50 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 10.04 7.55 -40.82 -0.31 9.73 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.21 7.76 -51.93 -0.40 0.81 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.40 2.20 6.37 -40.82 -0.26 1.94 16 40 H 0.18 0.70 6.38 -52.49 -0.33 0.36 16 41 H 0.19 0.05 8.06 -52.49 -0.42 -0.38 16 42 H 0.19 0.04 8.06 -52.48 -0.42 -0.38 16 43 H 0.17 1.50 7.70 -52.49 -0.40 1.09 16 44 H 0.07 0.60 7.72 -51.93 -0.40 0.20 16 45 H 0.08 0.85 7.67 -51.93 -0.40 0.45 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -36.78 378.16 -9.94 -46.71 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.83 Total: 5.22 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -4.63 Total: -3.12 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.25 Total: -64.70 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.09 Total: -7.26 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.78 -9.94 -46.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332274160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.341 kcal (2) G-P(sol) polarization free energy of solvation -36.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds