Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01514 * 53.60688 * 11 10 9 13 13 C 1.54263 * 110.03243 * 292.16632 * 11 10 9 14 14 C 1.54888 * 104.19606 * 217.10385 * 13 11 10 15 15 C 1.54890 * 102.74845 * 37.93987 * 14 13 11 16 16 H 1.09000 * 110.59817 * 80.79446 * 15 14 13 17 17 N 1.46502 * 110.48904 * 203.37812 * 15 14 13 18 18 C 1.34775 * 120.00117 * 269.77993 * 17 15 14 19 19 O 1.21551 * 120.00227 * 359.97438 * 18 17 15 20 20 C 1.47845 * 120.00016 * 179.97438 * 18 17 15 21 21 C 1.40602 * 120.27569 * 359.72262 * 20 18 17 22 22 N 1.30819 * 121.51607 * 179.68770 * 21 20 18 23 23 C 1.33761 * 121.79502 * 0.59597 * 22 21 20 24 24 N 1.33893 * 120.60839 * 179.69794 * 23 22 21 25 25 C 1.31331 * 119.84250 * 180.02562 * 24 23 22 26 26 C 1.39760 * 120.77526 * 359.95838 * 25 24 23 27 27 N 1.31304 * 120.55871 * 0.02562 * 26 25 24 28 28 C 1.33666 * 119.70756 * 359.97438 * 27 26 25 29 29 C 1.38908 * 120.28073 * 179.97438 * 20 18 17 30 30 C 1.53877 * 110.03508 * 174.99756 * 11 10 9 31 31 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 34 34 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 35 35 H 1.09000 * 110.48832 * 335.78097 * 13 11 10 36 36 H 1.09000 * 110.48619 * 98.42458 * 13 11 10 37 37 H 1.09003 * 110.75717 * 279.62730 * 14 13 11 38 38 H 1.08997 * 110.91615 * 156.33185 * 14 13 11 39 39 H 0.96997 * 119.99596 * 89.77203 * 17 15 14 40 40 H 1.07994 * 119.24242 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.61148 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.71829 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.99349 * 359.97438 * 29 20 18 44 44 H 1.08996 * 110.03408 * 238.57457 * 30 11 10 45 45 H 1.09006 * 110.02846 * 0.02562 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3597 -4.7082 -0.8269 13 6 0.3042 -4.8663 1.3396 14 6 0.1413 -6.3787 1.6316 15 6 1.4871 -6.9683 1.1414 16 1 2.2632 -6.8302 1.8942 17 7 1.3366 -8.3890 0.8167 18 6 1.5490 -9.3231 1.7647 19 8 1.8659 -8.9869 2.8890 20 6 1.3966 -10.7567 1.4372 21 6 1.0246 -11.1519 0.1402 22 7 0.8886 -12.4135 -0.1778 23 6 1.0844 -13.3903 0.7149 24 7 0.9328 -14.6738 0.3652 25 6 1.1283 -15.6208 1.2539 26 6 1.4949 -15.3061 2.5653 27 7 1.6501 -14.0552 2.9332 28 6 1.4565 -13.0748 2.0456 29 6 1.6146 -11.7244 2.4097 30 6 1.8158 -6.1562 -0.1283 31 1 -0.4850 -0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.6853 -3.7142 -0.8912 34 1 2.6841 -3.7150 0.8887 35 1 0.8880 -4.3869 2.1254 36 1 -0.6711 -4.3893 1.2427 37 1 -0.6918 -6.7941 1.0645 38 1 0.0073 -6.5568 2.6985 39 1 1.0840 -8.6572 -0.0805 40 1 0.8515 -10.3966 -0.6122 41 1 1.0047 -16.6549 0.9679 42 1 1.6509 -16.0984 3.2824 43 1 1.8976 -11.4488 3.4148 44 1 1.4763 -6.6937 -1.0137 45 1 2.8892 -5.9763 -0.1886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332274161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = 56.949134 kcal Electronic energy + Delta-G solvation = -27674.895438 eV Core-core repulsion = 23692.745344 eV Total energy + Delta-G solvation = -3982.150094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.32241 -40.48073 -38.85341 -38.03008 -35.65621 -35.14662 -33.83445 -32.58611 -31.89605 -30.95330 -28.81502 -27.99982 -26.41744 -25.71667 -24.13741 -23.42940 -22.42397 -22.29184 -20.74989 -19.97252 -19.58691 -18.95602 -18.43403 -17.21678 -17.08220 -16.57570 -16.22966 -15.74536 -15.48985 -15.26991 -15.16371 -14.90498 -14.16925 -13.93556 -13.78607 -13.63155 -13.47972 -13.38155 -13.27244 -13.18352 -12.49610 -12.37268 -12.29394 -11.90636 -11.54260 -11.36430 -11.04316 -10.79936 -10.75245 -10.53457 -10.43850 -10.37510 -10.18428 -9.99408 -9.95993 -9.85843 -9.41633 -9.31289 -9.13655 -8.85539 -6.97575 -6.08593 -3.07633 -0.74704 -0.44252 1.08206 1.73289 2.57862 2.67145 2.82471 3.30777 3.37015 3.37432 3.52944 3.56625 3.74022 3.87760 3.94447 4.08949 4.21856 4.32424 4.55114 4.58462 4.62082 4.73609 4.86426 4.92474 5.12993 5.24869 5.37864 5.45547 5.47250 5.50647 5.63425 5.64424 5.74397 5.78590 5.96685 6.02503 6.07674 6.17464 6.25519 6.31911 6.41915 6.52795 6.71825 6.76390 6.84183 7.06807 7.22341 7.74792 7.82852 8.78120 9.25968 10.12320 10.27525 11.40163 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.042258 B = 0.001610 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.430603 B =17388.560262 C =17610.468919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.046 4.046 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.743 5.743 10 C 0.164 3.836 11 C -0.097 4.097 12 H 0.074 0.926 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.139 3.861 16 H 0.100 0.900 17 N -0.712 5.712 18 C 0.564 3.436 19 O -0.524 6.524 20 C -0.178 4.178 21 C 0.192 3.808 22 N -0.454 5.454 23 C 0.272 3.728 24 N -0.418 5.418 25 C 0.115 3.885 26 C 0.075 3.925 27 N -0.404 5.404 28 C 0.018 3.982 29 C 0.042 3.958 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.367 0.633 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.176 0.824 41 H 0.187 0.813 42 H 0.186 0.814 43 H 0.168 0.832 44 H 0.068 0.932 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 -33.927 2.743 34.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.244 4.244 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.389 5.389 10 C 0.037 3.963 11 C -0.117 4.117 12 H 0.092 0.908 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.035 3.965 16 H 0.118 0.882 17 N -0.363 5.363 18 C 0.349 3.651 19 O -0.400 6.400 20 C -0.185 4.185 21 C 0.014 3.986 22 N -0.163 5.163 23 C 0.033 3.967 24 N -0.133 5.133 25 C -0.064 4.064 26 C -0.102 4.102 27 N -0.119 5.119 28 C -0.108 4.108 29 C 0.014 3.986 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.200 0.800 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.235 0.765 40 H 0.193 0.807 41 H 0.204 0.796 42 H 0.202 0.798 43 H 0.185 0.815 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.728 -32.088 2.641 32.243 hybrid contribution 0.029 -1.751 0.311 1.779 sum 1.757 -33.839 2.952 34.013 Atomic orbital electron populations 1.70887 1.06017 1.28340 1.53797 1.25768 0.97070 1.00973 1.00544 0.83242 0.74210 0.75629 0.75842 1.21038 1.22292 1.22306 1.20043 0.92026 0.85932 1.48230 0.91848 1.42348 1.04866 1.00941 1.90702 1.20731 0.92927 0.84864 0.97794 1.21908 0.97748 0.93907 0.98096 0.90789 1.22324 1.00923 0.94302 0.97396 1.22897 0.96468 0.96476 1.01364 1.22061 0.98803 0.77394 0.98230 0.88197 1.46043 1.69967 1.06877 1.13435 1.17802 0.77660 0.84389 0.85253 1.90835 1.46685 1.81790 1.20718 1.21194 1.06188 0.95332 0.95820 1.23314 0.89022 0.92452 0.93775 1.67481 1.14765 0.99691 1.34328 1.20111 0.95882 0.92149 0.88589 1.68366 1.11005 0.98711 1.35191 1.24396 0.91655 1.00311 0.90073 1.24290 0.94912 0.94387 0.96629 1.68628 1.08912 1.00331 1.33994 1.20214 1.03034 0.94989 0.92548 1.21831 0.87683 0.88475 1.00624 1.22410 1.01649 0.95760 0.96157 0.93462 0.80011 0.96448 0.96151 0.90781 0.91328 0.91381 0.91253 0.76530 0.80699 0.79636 0.79760 0.81464 0.91331 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.34 13.70 55.49 0.76 -28.58 16 2 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 3 Si 1.08 26.11 29.92 -169.99 -5.09 21.03 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.33 -9.45 9.99 -15.06 -0.15 -9.60 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.74 -18.66 5.45 -59.91 -0.33 -18.99 16 10 C 0.16 3.24 5.31 -4.05 -0.02 3.22 16 11 C -0.10 -1.45 2.96 -89.50 -0.26 -1.71 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 13 C -0.11 -1.62 6.08 -25.07 -0.15 -1.78 16 14 C -0.13 -1.58 6.58 -24.74 -0.16 -1.74 16 15 C 0.14 1.52 3.22 -66.27 -0.21 1.31 16 16 H 0.10 1.27 7.55 -51.93 -0.39 0.88 16 17 N -0.71 -6.11 5.11 -53.14 -0.27 -6.38 16 18 C 0.56 5.81 7.78 -12.33 -0.10 5.71 16 19 O -0.52 -7.34 16.03 5.32 0.09 -7.25 16 20 C -0.18 -1.54 5.89 -104.83 -0.62 -2.16 16 21 C 0.19 1.45 10.69 -17.09 -0.18 1.27 16 22 N -0.45 -4.61 10.39 -12.27 -0.13 -4.74 16 23 C 0.27 2.81 7.60 -157.59 -1.20 1.61 16 24 N -0.42 -3.84 10.55 -12.38 -0.13 -3.97 16 25 C 0.12 0.54 11.21 -17.20 -0.19 0.35 16 26 C 0.07 0.34 11.22 -17.21 -0.19 0.14 16 27 N -0.40 -3.32 10.46 -10.77 -0.11 -3.44 16 28 C 0.02 0.17 6.59 -84.78 -0.56 -0.38 16 29 C 0.04 0.38 9.68 -38.38 -0.37 0.01 16 30 C -0.12 -1.35 6.19 -25.62 -0.16 -1.51 16 31 H 0.25 7.75 6.77 -40.82 -0.28 7.47 16 32 H 0.37 9.36 6.38 -40.82 -0.26 9.09 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 35 H 0.07 1.22 7.76 -51.93 -0.40 0.81 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.40 2.19 6.40 -40.82 -0.26 1.93 16 40 H 0.18 0.69 6.38 -52.49 -0.33 0.36 16 41 H 0.19 0.04 8.06 -52.49 -0.42 -0.38 16 42 H 0.19 0.03 8.06 -52.49 -0.42 -0.39 16 43 H 0.17 1.49 7.70 -52.49 -0.40 1.09 16 44 H 0.07 0.61 7.73 -51.93 -0.40 0.21 16 45 H 0.08 0.87 7.67 -51.93 -0.40 0.47 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -38.00 376.41 -9.88 -47.88 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.71 Total: 5.48 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -4.63 Total: -6.70 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -0.21 Total: -66.10 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.09 Total: -7.25 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.09 Total: 21.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.00 -9.88 -47.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332274161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.826 kcal (2) G-P(sol) polarization free energy of solvation -37.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds