Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.42905 * 307.53837 * 11 10 9 13 13 C 1.54885 * 110.48820 * 70.22427 * 11 10 9 14 14 C 1.54897 * 102.74561 * 156.62056 * 13 11 10 15 15 C 1.54263 * 104.19440 * 322.05564 * 14 13 11 16 16 H 1.08997 * 110.07024 * 142.91810 * 15 14 13 17 17 N 1.46497 * 110.03489 * 264.32302 * 15 14 13 18 18 C 1.34774 * 120.00501 * 272.17509 * 17 15 14 19 19 O 1.21556 * 119.99586 * 359.97438 * 18 17 15 20 20 C 1.47837 * 120.00333 * 179.97438 * 18 17 15 21 21 C 1.40600 * 120.28080 * 359.97438 * 20 18 17 22 22 N 1.30812 * 121.52668 * 180.02562 * 21 20 18 23 23 C 1.33762 * 121.79336 * 359.97438 * 22 21 20 24 24 N 1.33887 * 120.61881 * 180.02562 * 23 22 21 25 25 C 1.31338 * 119.84369 * 179.97438 * 24 23 22 26 26 C 1.39750 * 120.77869 * 0.02562 * 25 24 23 27 27 N 1.31311 * 120.55806 * 359.95056 * 26 25 24 28 28 C 1.33668 * 119.69973 * 0.04877 * 27 26 25 29 29 C 1.38913 * 120.28123 * 179.72105 * 20 18 17 30 30 C 1.53877 * 106.60011 * 23.61240 * 15 14 13 31 31 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 33 33 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 34 34 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 35 35 H 1.08999 * 110.75700 * 274.92940 * 13 11 10 36 36 H 1.08990 * 110.75845 * 38.30867 * 13 11 10 37 37 H 1.09001 * 110.48410 * 203.37957 * 14 13 11 38 38 H 1.09004 * 110.48190 * 80.73453 * 14 13 11 39 39 H 0.97006 * 119.99774 * 92.16367 * 17 15 14 40 40 H 1.07997 * 119.23696 * 0.02562 * 21 20 18 41 41 H 1.08004 * 119.60555 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.72081 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.99339 * 359.97438 * 29 20 18 44 44 H 1.09000 * 110.03023 * 240.71282 * 30 15 14 45 45 H 1.09001 * 110.02849 * 119.28285 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 6 5.6163 -2.1913 0.0170 12 1 5.8803 -1.5113 -0.7929 13 6 6.0534 -1.6072 1.3833 14 6 7.5612 -1.9575 1.4381 15 6 7.6473 -3.3596 0.8005 16 1 8.5567 -3.4449 0.2058 17 7 7.6326 -4.3873 1.8444 18 6 8.7870 -4.7844 2.4155 19 8 9.8404 -4.2901 2.0641 20 6 8.7721 -5.8212 3.4693 21 6 7.5569 -6.3966 3.8806 22 7 7.5154 -7.3152 4.8110 23 6 8.6237 -7.7544 5.4177 24 7 8.5540 -8.6962 6.3668 25 6 9.6519 -9.1167 6.9522 26 6 10.8976 -8.5922 6.5970 27 7 10.9929 -7.6682 5.6690 28 6 9.8887 -7.2251 5.0597 29 6 9.9590 -6.2390 4.0577 30 6 6.4106 -3.5083 -0.1031 31 1 -0.4851 0.8400 0.0004 32 1 3.8646 -0.3621 0.0055 33 1 3.8450 -3.0407 0.9008 34 1 3.8524 -3.0443 -0.8791 35 1 5.9066 -0.5274 1.4065 36 1 5.5151 -2.0890 2.1994 37 1 7.9089 -1.9860 2.4708 38 1 8.1410 -1.2388 0.8589 39 1 6.7919 -4.7820 2.1247 40 1 6.6365 -6.0726 3.4178 41 1 9.5911 -9.8762 7.7176 42 1 11.7895 -8.9501 7.0898 43 1 10.9070 -5.8172 3.7578 44 1 5.7996 -4.3451 0.2351 45 1 6.7200 -3.6649 -1.1364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332274162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = 61.399229 kcal Electronic energy + Delta-G solvation = -27987.747448 eV Core-core repulsion = 24005.790325 eV Total energy + Delta-G solvation = -3981.957123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27737 -40.51435 -38.85561 -38.00594 -35.60951 -35.08296 -33.64297 -32.53493 -31.84943 -31.20119 -29.12134 -28.31251 -26.49929 -25.70442 -24.50149 -23.39972 -22.41768 -21.86541 -20.40747 -20.19549 -19.56141 -18.93426 -18.35876 -17.53315 -17.04788 -16.53522 -16.16629 -15.76399 -15.63351 -15.26819 -14.97871 -14.81044 -14.40907 -14.13496 -13.85928 -13.50290 -13.45042 -13.31001 -13.23953 -12.70905 -12.45591 -12.32902 -12.26336 -11.94540 -11.78691 -11.44633 -11.29849 -10.99204 -10.93376 -10.58837 -10.44962 -10.38553 -10.34266 -10.08396 -9.95207 -9.81536 -9.59510 -9.36583 -9.32936 -8.89870 -7.23193 -5.77416 -3.12640 -0.70453 -0.39306 1.12270 1.77945 2.60938 2.69589 2.88258 3.35021 3.36401 3.39153 3.41717 3.41876 3.44724 3.93286 3.99110 4.13280 4.26365 4.37127 4.52408 4.56686 4.58679 4.62787 4.87852 4.89311 5.18106 5.25708 5.28016 5.42483 5.44900 5.50726 5.57703 5.65773 5.68790 5.73303 5.86910 5.91919 5.94758 6.11832 6.30337 6.31388 6.37179 6.39515 6.66514 6.77107 6.80755 7.08626 7.28441 7.75804 7.98956 8.41772 9.21230 9.93679 10.13616 11.41044 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019911 B = 0.001977 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.915133 B =14157.194962 C =14963.662729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.165 3.835 11 C -0.103 4.103 12 H 0.077 0.923 13 C -0.116 4.116 14 C -0.134 4.134 15 C 0.141 3.859 16 H 0.093 0.907 17 N -0.710 5.710 18 C 0.565 3.435 19 O -0.528 6.528 20 C -0.179 4.179 21 C 0.193 3.807 22 N -0.453 5.453 23 C 0.273 3.727 24 N -0.417 5.417 25 C 0.115 3.885 26 C 0.074 3.926 27 N -0.405 5.405 28 C 0.017 3.983 29 C 0.041 3.959 30 C -0.122 4.122 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.401 0.599 40 H 0.178 0.822 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.167 0.833 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.037 -17.859 11.401 32.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.038 3.962 11 C -0.122 4.122 12 H 0.096 0.904 13 C -0.153 4.153 14 C -0.172 4.172 15 C 0.037 3.963 16 H 0.111 0.889 17 N -0.362 5.362 18 C 0.350 3.650 19 O -0.405 6.405 20 C -0.186 4.186 21 C 0.015 3.985 22 N -0.161 5.161 23 C 0.034 3.966 24 N -0.132 5.132 25 C -0.065 4.065 26 C -0.103 4.103 27 N -0.119 5.119 28 C -0.109 4.109 29 C 0.013 3.987 30 C -0.161 4.161 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.238 0.762 40 H 0.194 0.806 41 H 0.203 0.797 42 H 0.202 0.798 43 H 0.185 0.815 44 H 0.094 0.906 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 24.654 -17.860 11.282 32.467 hybrid contribution 0.831 1.328 0.031 1.567 sum 25.485 -16.532 11.313 32.416 Atomic orbital electron populations 1.69700 1.05107 1.25808 1.57636 1.24683 0.95243 0.97224 1.02114 0.86543 0.79199 0.84989 0.77760 1.21110 1.21779 1.20319 1.19061 0.80719 0.94687 1.42896 0.89275 1.42697 1.03976 1.02277 1.91115 1.20672 0.87823 0.89300 0.98441 1.22241 0.96218 0.95860 0.97857 0.90441 1.22554 0.93994 1.01368 0.97419 1.22803 0.97712 0.95677 1.01038 1.21751 0.99920 0.86793 0.87809 0.88902 1.46158 1.08666 1.41428 1.39953 1.17796 0.84471 0.81490 0.81237 1.90816 1.30617 1.56429 1.62658 1.21192 0.94948 1.01299 1.01152 1.23358 0.97287 0.88248 0.89583 1.67499 1.28939 1.11771 1.07884 1.20125 0.88754 0.93723 0.94043 1.68373 1.31251 1.08434 1.05118 1.24394 0.88126 0.97149 0.96788 1.24278 0.99650 0.92613 0.93743 1.68625 1.29410 1.08648 1.05249 1.20215 0.91342 0.99852 0.99485 1.21808 0.99663 0.89073 0.88145 1.22455 0.95028 0.99007 0.99599 0.93079 0.80661 0.95585 0.95604 0.91354 0.91111 0.91475 0.90721 0.76245 0.80565 0.79655 0.79803 0.81549 0.90562 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 21.96 27.74 -169.99 -4.72 17.25 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.42 6.51 56.52 0.37 -6.05 16 7 C -0.24 -6.82 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.76 -17.36 5.30 -59.90 -0.32 -17.68 16 10 C 0.16 2.93 5.54 -4.04 -0.02 2.91 16 11 C -0.10 -1.38 2.89 -88.96 -0.26 -1.63 16 12 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.12 -1.50 6.19 -24.74 -0.15 -1.65 16 14 C -0.13 -1.46 6.54 -25.07 -0.16 -1.63 16 15 C 0.14 1.39 3.25 -66.81 -0.22 1.18 16 16 H 0.09 0.98 7.56 -51.93 -0.39 0.59 16 17 N -0.71 -6.11 4.98 -53.67 -0.27 -6.38 16 18 C 0.56 5.71 7.77 -12.33 -0.10 5.62 16 19 O -0.53 -7.04 16.04 5.32 0.09 -6.95 16 20 C -0.18 -1.59 5.89 -104.83 -0.62 -2.21 16 21 C 0.19 1.61 10.69 -17.10 -0.18 1.43 16 22 N -0.45 -4.96 10.39 -12.28 -0.13 -5.09 16 23 C 0.27 2.97 7.60 -157.60 -1.20 1.77 16 24 N -0.42 -4.08 10.55 -12.39 -0.13 -4.21 16 25 C 0.11 0.59 11.21 -17.20 -0.19 0.40 16 26 C 0.07 0.36 11.22 -17.21 -0.19 0.16 16 27 N -0.40 -3.41 10.46 -10.77 -0.11 -3.52 16 28 C 0.02 0.17 6.59 -84.78 -0.56 -0.39 16 29 C 0.04 0.38 9.68 -38.38 -0.37 0.01 16 30 C -0.12 -1.23 6.14 -25.61 -0.16 -1.39 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.36 8.12 5.49 -40.82 -0.22 7.90 16 33 H 0.03 0.47 8.02 -51.93 -0.42 0.05 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.94 7.96 -51.93 -0.41 0.52 16 37 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.40 2.57 6.35 -40.82 -0.26 2.31 16 40 H 0.18 0.91 6.38 -52.49 -0.33 0.57 16 41 H 0.19 0.13 8.06 -52.48 -0.42 -0.30 16 42 H 0.19 0.08 8.06 -52.49 -0.42 -0.34 16 43 H 0.17 1.47 7.70 -52.49 -0.40 1.06 16 44 H 0.08 0.70 7.31 -51.93 -0.38 0.32 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -37.29 375.34 -9.58 -46.87 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.79 Total: 4.97 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -4.63 Total: -2.41 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.18 Total: -65.38 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: 0.09 Total: -6.95 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.72 Total: 17.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.29 -9.58 -46.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332274162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.274 kcal (2) G-P(sol) polarization free energy of solvation -37.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds