Wall clock time and date at job start Sat Apr 11 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86812 * 119.99966 * 2 1 4 4 H 1.48498 * 109.46773 * 269.99917 * 3 2 1 5 5 H 1.48498 * 109.46928 * 29.99647 * 3 2 1 6 6 H 1.48494 * 109.46814 * 149.99802 * 3 2 1 7 7 C 1.38811 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99726 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00121 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99789 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46927 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.67172 * 56.78594 * 11 10 9 13 13 C 1.54886 * 110.75813 * 293.54866 * 11 10 9 14 14 C 1.54272 * 104.19745 * 203.55896 * 13 11 10 15 15 C 1.53876 * 106.59542 * 23.60955 * 14 13 11 16 16 H 1.09004 * 110.02935 * 240.66424 * 15 14 13 17 17 N 1.46506 * 110.03056 * 119.28830 * 15 14 13 18 18 C 1.34768 * 120.00142 * 87.08918 * 17 15 14 19 19 O 1.21554 * 120.00206 * 359.97438 * 18 17 15 20 20 C 1.47846 * 120.00035 * 179.97438 * 18 17 15 21 21 C 1.40600 * 120.27939 * 0.02562 * 20 18 17 22 22 N 1.30814 * 121.52099 * 179.97438 * 21 20 18 23 23 C 1.33756 * 121.79987 * 359.97438 * 22 21 20 24 24 N 1.33893 * 120.62267 * 180.02562 * 23 22 21 25 25 C 1.31327 * 119.84468 * 179.97438 * 24 23 22 26 26 C 1.39758 * 120.78326 * 359.97438 * 25 24 23 27 27 N 1.31315 * 120.54894 * 0.04283 * 26 25 24 28 28 C 1.33663 * 119.70431 * 359.95788 * 27 26 25 29 29 C 1.38908 * 120.27925 * 179.72541 * 20 18 17 30 30 C 1.54259 * 106.64143 * 359.97438 * 15 14 13 31 31 H 0.97002 * 120.00025 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00203 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.47136 * 60.00854 * 10 9 7 34 34 H 1.08998 * 109.47290 * 300.00594 * 10 9 7 35 35 H 1.08997 * 110.48591 * 84.88140 * 13 11 10 36 36 H 1.09006 * 110.59823 * 322.29025 * 13 11 10 37 37 H 1.08994 * 110.03126 * 264.32805 * 14 13 11 38 38 H 1.09003 * 110.07218 * 142.91297 * 14 13 11 39 39 H 0.97002 * 119.99472 * 267.08715 * 17 15 14 40 40 H 1.08002 * 119.23859 * 0.02562 * 21 20 18 41 41 H 1.08006 * 119.60615 * 180.02562 * 25 24 23 42 42 H 1.07992 * 119.72421 * 180.02562 * 26 25 24 43 43 H 1.07999 * 120.99638 * 359.97438 * 29 20 18 44 44 H 1.09000 * 110.49275 * 95.09675 * 30 15 14 45 45 H 1.09004 * 110.48351 * 217.73803 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0009 12 1 5.8926 -1.5708 0.8536 13 6 6.0503 -1.5231 -1.3274 14 6 7.5523 -1.8551 -1.4449 15 6 7.7901 -3.1201 -0.6016 16 1 8.5026 -2.9087 0.1959 17 7 8.2946 -4.2019 -1.4510 18 6 9.6177 -4.3184 -1.6791 19 8 10.3925 -3.5255 -1.1806 20 6 10.1268 -5.4105 -2.5358 21 6 9.2358 -6.3305 -3.1159 22 7 9.6597 -7.3055 -3.8781 23 6 10.9589 -7.4776 -4.1452 24 7 11.3667 -8.4836 -4.9291 25 6 12.6461 -8.6380 -5.1817 26 6 13.5925 -7.7627 -4.6418 27 7 13.2183 -6.7685 -3.8699 28 6 11.9214 -6.5921 -3.5992 29 6 11.4889 -5.5325 -2.7795 30 6 6.4250 -3.5131 -0.0001 31 1 -0.4850 0.8401 -0.0004 32 1 3.8647 -0.3621 -0.0004 33 1 3.8486 -3.0433 -0.8882 34 1 3.8491 -3.0414 0.8918 35 1 5.9007 -0.4446 -1.2787 36 1 5.4993 -1.9463 -2.1674 37 1 8.1486 -1.0297 -1.0561 38 1 7.8130 -2.0459 -2.4859 39 1 7.6762 -4.8344 -1.8491 40 1 8.1770 -6.2294 -2.9286 41 1 12.9708 -9.4506 -5.8148 42 1 14.6403 -7.9054 -4.8611 43 1 12.1951 -4.8368 -2.3510 44 1 5.9340 -4.2599 -0.6240 45 1 6.5493 -3.8860 1.0166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332274163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:53 Heat of formation + Delta-G solvation = 61.192298 kcal Electronic energy + Delta-G solvation = -27777.774921 eV Core-core repulsion = 23795.808825 eV Total energy + Delta-G solvation = -3981.966096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.31654 -40.51947 -38.86155 -38.01974 -35.64901 -35.12907 -33.70274 -32.57522 -31.88420 -31.21540 -29.11670 -28.28180 -26.50971 -25.74003 -24.51316 -23.43039 -22.37567 -21.89615 -20.61569 -20.06769 -19.54200 -18.98369 -18.39606 -17.56155 -17.07620 -16.54025 -16.20262 -15.82211 -15.67757 -15.31412 -14.98634 -14.80351 -14.46561 -14.08161 -13.86686 -13.54252 -13.45273 -13.35618 -13.17534 -12.75308 -12.50291 -12.36572 -12.23098 -12.05031 -11.85582 -11.45525 -11.32804 -10.94544 -10.91126 -10.54831 -10.43345 -10.39132 -10.38708 -10.06482 -9.99038 -9.85425 -9.59199 -9.40717 -9.36012 -8.89407 -7.22535 -5.76967 -3.12151 -0.74223 -0.43407 1.08561 1.73912 2.57244 2.66277 2.83758 3.31263 3.37088 3.37691 3.38040 3.39778 3.45190 3.88787 3.95030 4.09196 4.22225 4.33171 4.51030 4.57855 4.59099 4.59483 4.85894 4.87204 5.13831 5.24727 5.24958 5.42159 5.47118 5.48298 5.55111 5.64717 5.67259 5.74713 5.85215 5.92476 5.97095 6.13367 6.25480 6.26851 6.39582 6.41066 6.66901 6.77001 6.78795 7.05159 7.23801 7.72949 7.99608 8.42265 9.21849 9.94281 10.14224 11.41504 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.001778 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.979148 B =15745.946168 C =16229.144192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.115 4.115 14 C -0.134 4.134 15 C 0.141 3.859 16 H 0.094 0.906 17 N -0.712 5.712 18 C 0.564 3.436 19 O -0.526 6.526 20 C -0.179 4.179 21 C 0.193 3.807 22 N -0.453 5.453 23 C 0.273 3.727 24 N -0.418 5.418 25 C 0.115 3.885 26 C 0.075 3.925 27 N -0.405 5.405 28 C 0.018 3.982 29 C 0.041 3.959 30 C -0.121 4.121 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.400 0.600 40 H 0.177 0.823 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.167 0.833 44 H 0.076 0.924 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.590 -17.147 -8.876 35.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.119 4.119 12 H 0.097 0.903 13 C -0.153 4.153 14 C -0.173 4.173 15 C 0.037 3.963 16 H 0.112 0.888 17 N -0.364 5.364 18 C 0.349 3.651 19 O -0.403 6.403 20 C -0.186 4.186 21 C 0.015 3.985 22 N -0.162 5.162 23 C 0.033 3.967 24 N -0.132 5.132 25 C -0.064 4.064 26 C -0.102 4.102 27 N -0.119 5.119 28 C -0.108 4.108 29 C 0.013 3.987 30 C -0.159 4.159 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.236 0.764 40 H 0.194 0.806 41 H 0.204 0.796 42 H 0.202 0.798 43 H 0.185 0.815 44 H 0.095 0.905 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 29.175 -17.176 -8.808 34.983 hybrid contribution 0.840 1.425 0.053 1.655 sum 30.015 -15.751 -8.755 35.009 Atomic orbital electron populations 1.69701 1.05106 1.25796 1.57661 1.24673 0.95229 0.97194 1.02098 0.86555 0.79237 0.85019 0.77780 1.21075 1.21750 1.20324 1.19066 0.80714 0.94702 1.42899 0.89263 1.42685 1.03965 1.02275 1.91136 1.20602 0.87700 0.89305 0.98533 1.22332 0.96198 0.95336 0.98083 0.90333 1.22384 0.93862 1.01144 0.97937 1.22597 0.97600 0.97049 1.00033 1.21813 0.96106 0.85950 0.92427 0.88776 1.46153 1.06593 1.32416 1.51205 1.17804 0.82881 0.83816 0.80565 1.90823 1.56208 1.42928 1.50347 1.21193 0.94782 0.99615 1.03008 1.23337 1.00523 0.86716 0.87945 1.67485 1.14196 1.20313 1.14181 1.20115 0.90304 0.91987 0.94273 1.68368 1.17362 1.16947 1.10544 1.24396 0.88103 0.98347 0.95586 1.24287 1.02537 0.90577 0.92837 1.68627 1.15194 1.17917 1.10174 1.20216 0.91349 0.98303 1.00978 1.21822 0.95089 0.92720 0.89021 1.22640 0.93361 0.98603 1.01328 0.93084 0.80651 0.95462 0.95602 0.91482 0.91001 0.91193 0.91529 0.76353 0.80610 0.79638 0.79776 0.81522 0.90525 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.02 27.74 -169.99 -4.71 17.30 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.76 -17.48 5.25 -59.91 -0.31 -17.79 16 10 C 0.17 2.99 5.71 -4.04 -0.02 2.96 16 11 C -0.10 -1.36 2.95 -88.59 -0.26 -1.63 16 12 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 13 C -0.12 -1.51 5.97 -25.07 -0.15 -1.66 16 14 C -0.13 -1.48 6.59 -25.61 -0.17 -1.65 16 15 C 0.14 1.39 3.23 -66.81 -0.22 1.18 16 16 H 0.09 1.03 7.59 -51.93 -0.39 0.64 16 17 N -0.71 -5.81 4.94 -53.66 -0.27 -6.07 16 18 C 0.56 5.54 7.77 -12.33 -0.10 5.45 16 19 O -0.53 -6.99 16.05 5.32 0.09 -6.90 16 20 C -0.18 -1.51 5.89 -104.83 -0.62 -2.13 16 21 C 0.19 1.47 10.69 -17.09 -0.18 1.28 16 22 N -0.45 -4.66 10.39 -12.28 -0.13 -4.78 16 23 C 0.27 2.82 7.60 -157.60 -1.20 1.62 16 24 N -0.42 -3.87 10.55 -12.39 -0.13 -4.00 16 25 C 0.12 0.55 11.21 -17.20 -0.19 0.35 16 26 C 0.07 0.33 11.22 -17.21 -0.19 0.14 16 27 N -0.40 -3.28 10.46 -10.77 -0.11 -3.39 16 28 C 0.02 0.17 6.59 -84.78 -0.56 -0.39 16 29 C 0.04 0.37 9.68 -38.38 -0.37 0.00 16 30 C -0.12 -1.21 5.99 -25.03 -0.15 -1.36 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.36 8.17 5.39 -40.82 -0.22 7.95 16 33 H 0.03 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.97 8.02 -51.93 -0.42 0.56 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 39 H 0.40 2.19 6.38 -40.82 -0.26 1.93 16 40 H 0.18 0.73 6.38 -52.49 -0.33 0.40 16 41 H 0.19 0.05 8.06 -52.48 -0.42 -0.37 16 42 H 0.19 0.02 8.06 -52.49 -0.42 -0.40 16 43 H 0.17 1.43 7.70 -52.49 -0.40 1.03 16 44 H 0.08 0.68 7.64 -51.93 -0.40 0.28 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -37.47 375.45 -9.59 -47.05 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.81 Total: 4.30 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -4.63 Total: -2.83 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -0.18 Total: -64.59 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.09 Total: -6.90 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.47 -9.59 -47.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332274163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.246 kcal (2) G-P(sol) polarization free energy of solvation -37.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds