Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34976 * 125.97617 * 124.71318 * 10 9 7 12 12 C 1.35233 * 107.86088 * 179.87572 * 11 10 9 13 13 C 1.40412 * 107.86942 * 0.39116 * 12 11 10 14 14 N 1.40157 * 125.97432 * 179.74260 * 13 12 11 15 15 C 1.34780 * 120.00018 * 359.97438 * 14 13 12 16 16 O 1.21288 * 119.99845 * 0.02562 * 15 14 13 17 17 C 1.50693 * 119.99805 * 180.02562 * 15 14 13 18 18 H 1.08997 * 110.64808 * 59.30417 * 17 15 14 19 19 C 1.54603 * 110.72751 * 296.15208 * 17 15 14 20 20 C 1.53995 * 105.14020 * 219.68772 * 19 17 15 21 21 N 1.47901 * 107.05946 * 358.77331 * 20 19 17 22 22 C 1.39164 * 110.99872 * 145.84385 * 21 20 19 23 23 C 1.39482 * 120.86056 * 119.84881 * 22 21 20 24 24 C 1.37901 * 119.06045 * 179.72994 * 23 22 21 25 25 N 1.31995 * 120.84616 * 0.55506 * 24 23 22 26 26 C 1.31998 * 121.90883 * 359.71484 * 25 24 23 27 27 C 1.37901 * 120.84138 * 0.02562 * 26 25 24 28 28 C 1.48733 * 105.94260 * 25.20141 * 21 20 19 29 29 N 1.31222 * 108.05079 * 359.75807 * 13 12 11 30 30 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 32 32 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 33 33 H 1.07999 * 126.07000 * 359.97438 * 11 10 9 34 34 H 1.08000 * 126.06785 * 180.12837 * 12 11 10 35 35 H 0.96998 * 119.99915 * 180.02562 * 14 13 12 36 36 H 1.09002 * 110.30539 * 338.60193 * 19 17 15 37 37 H 1.08995 * 110.30543 * 100.76490 * 19 17 15 38 38 H 1.08993 * 109.91593 * 118.12799 * 20 19 17 39 39 H 1.09002 * 109.90947 * 239.42218 * 20 19 17 40 40 H 1.07994 * 120.47031 * 359.97438 * 23 22 21 41 41 H 1.08000 * 119.57184 * 180.29294 * 24 23 22 42 42 H 1.07996 * 119.57522 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.45981 * 180.02562 * 27 26 25 44 44 H 1.09005 * 110.83663 * 202.57265 * 28 21 20 45 45 H 1.09001 * 110.58253 * 79.38293 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2454 -4.6196 0.8974 12 6 3.2609 -5.4424 0.5501 13 6 3.8693 -4.9144 -0.5999 14 7 4.9657 -5.4647 -1.2777 15 6 5.5309 -6.6041 -0.8319 16 8 5.0905 -7.1535 0.1557 17 6 6.7101 -7.1955 -1.5604 18 1 7.5393 -6.4885 -1.5872 19 6 6.3104 -7.6242 -2.9910 20 6 7.0429 -8.9575 -3.2307 21 7 7.8336 -9.2430 -2.0139 22 6 7.8923 -10.6113 -1.7670 23 6 9.1158 -11.2800 -1.7311 24 6 9.1312 -12.6355 -1.4777 25 7 8.0077 -13.3002 -1.2818 26 6 6.8302 -12.7046 -1.3133 27 6 6.7289 -11.3508 -1.5552 28 6 7.1475 -8.5290 -0.9040 29 7 3.2322 -3.8153 -0.9288 30 1 -0.4850 0.8401 0.0004 31 1 0.6247 -2.5571 0.8897 32 1 0.6240 -2.5568 -0.8903 33 1 1.5846 -4.7465 1.7421 34 1 3.5547 -6.3434 1.0681 35 1 5.3181 -5.0251 -2.0673 36 1 5.2319 -7.7683 -3.0554 37 1 6.6370 -6.8776 -3.7148 38 1 6.3184 -9.7543 -3.3983 39 1 7.7056 -8.8674 -4.0915 40 1 10.0383 -10.7432 -1.8954 41 1 10.0743 -13.1606 -1.4433 42 1 5.9347 -13.2851 -1.1474 43 1 5.7622 -10.8697 -1.5792 44 1 7.8349 -8.3442 -0.0784 45 1 6.2792 -9.0935 -0.5641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364057485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = 99.935798 kcal Electronic energy + Delta-G solvation = -28006.402775 eV Core-core repulsion = 24026.116723 eV Total energy + Delta-G solvation = -3980.286052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27763 -40.67766 -39.70438 -38.26410 -34.86668 -33.90387 -33.31918 -31.63462 -31.09284 -29.89430 -29.51326 -29.35779 -26.76331 -24.62564 -23.81920 -23.24398 -22.58315 -21.40911 -21.08920 -20.11600 -19.50840 -18.12886 -17.21803 -16.78457 -16.66052 -16.58462 -16.17352 -15.70246 -15.41962 -14.98002 -14.87912 -14.60264 -14.33057 -14.12726 -14.05434 -13.80526 -13.53592 -13.29324 -12.85822 -12.73334 -12.39316 -12.31355 -12.16722 -12.05062 -11.83128 -11.69177 -11.29935 -11.09282 -10.89159 -10.51472 -10.29173 -10.06866 -9.92934 -9.84476 -9.64811 -9.55909 -9.55311 -9.13945 -8.66492 -8.20305 -7.54324 -6.27844 -4.33217 0.71893 0.78751 2.19485 2.62515 2.85342 3.22931 3.26438 3.28570 3.31298 3.38811 3.63506 3.83061 3.97256 4.09189 4.22913 4.28751 4.39294 4.51812 4.61822 4.75527 4.79733 4.84580 4.93098 5.03415 5.07295 5.23797 5.32466 5.38781 5.41756 5.44070 5.49946 5.53060 5.60127 5.74205 5.84458 6.13216 6.18560 6.19607 6.41883 6.52533 6.75703 6.80847 7.00413 7.32722 7.48948 7.59821 7.66604 7.84218 7.98562 8.13221 8.56868 8.75537 9.32502 10.80822 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030283 B = 0.001824 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.375949 B =15346.230602 C =15809.409605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.258 3.742 10 N -0.317 5.317 11 C 0.052 3.948 12 C -0.288 4.288 13 C 0.254 3.746 14 N -0.627 5.627 15 C 0.528 3.472 16 O -0.516 6.516 17 C -0.109 4.109 18 H 0.118 0.882 19 C -0.124 4.124 20 C 0.042 3.958 21 N -0.487 5.487 22 C 0.131 3.869 23 C -0.149 4.149 24 C 0.103 3.897 25 N -0.491 5.491 26 C 0.109 3.891 27 C -0.203 4.203 28 C 0.061 3.939 29 N -0.303 5.303 30 H 0.268 0.732 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.411 0.589 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.134 0.866 44 H 0.095 0.905 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.757 -21.402 -5.684 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.099 5.099 11 C -0.098 4.098 12 C -0.319 4.319 13 C 0.001 3.999 14 N -0.274 5.274 15 C 0.312 3.688 16 O -0.390 6.390 17 C -0.131 4.131 18 H 0.135 0.865 19 C -0.162 4.162 20 C -0.085 4.085 21 N -0.209 5.209 22 C 0.028 3.972 23 C -0.170 4.170 24 C -0.054 4.054 25 N -0.200 5.200 26 C -0.048 4.048 27 C -0.225 4.225 28 C -0.065 4.065 29 N -0.134 5.134 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.185 0.815 34 H 0.176 0.824 35 H 0.247 0.753 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.160 0.840 41 H 0.176 0.824 42 H 0.173 0.827 43 H 0.152 0.848 44 H 0.113 0.887 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.682 -21.319 -5.705 27.074 hybrid contribution -0.335 1.331 0.105 1.377 sum 15.347 -19.988 -5.600 25.815 Atomic orbital electron populations 1.69908 1.06040 1.27777 1.49556 1.24948 0.94996 0.99558 0.94547 0.86375 0.79379 0.81749 0.78927 1.21015 1.20034 1.19935 1.21207 0.93941 0.89373 1.52338 0.91365 1.19759 0.85597 0.81262 0.99312 1.49105 1.23110 1.19794 1.17923 1.22575 1.00338 0.90246 0.96680 1.21507 1.02278 1.06387 1.01730 1.19117 0.91535 0.94390 0.94818 1.42449 1.29717 1.24928 1.30328 1.20294 0.83965 0.79789 0.84702 1.90659 1.62567 1.60181 1.25556 1.22180 0.96774 0.98532 0.95592 0.86451 1.22472 1.01261 0.97406 0.95091 1.22995 0.95729 0.96784 0.92949 1.62341 1.49428 1.05188 1.03895 1.19310 0.93004 0.89610 0.95310 1.22079 0.98226 0.95400 1.01266 1.22759 0.96842 0.91272 0.94561 1.67731 0.98662 1.40502 1.13085 1.22644 0.95790 0.91877 0.94519 1.22742 0.99902 0.96590 1.03225 1.23223 0.98283 0.91999 0.93038 1.77336 1.03530 1.16191 1.16355 0.92238 0.92509 0.93676 0.81460 0.82351 0.75332 0.90236 0.89213 0.92607 0.89223 0.84045 0.82422 0.82704 0.84777 0.88658 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.55 9.24 -34.44 -0.32 -14.87 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.26 6.46 6.26 -5.20 -0.03 6.42 16 10 N -0.32 -7.22 3.67 -62.56 -0.23 -7.45 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 12 C -0.29 -5.51 9.61 -39.83 -0.38 -5.89 16 13 C 0.25 4.88 8.11 -154.39 -1.25 3.63 16 14 N -0.63 -8.87 5.43 -11.13 -0.06 -8.94 16 15 C 0.53 6.72 6.99 -10.99 -0.08 6.64 16 16 O -0.52 -8.23 12.88 5.55 0.07 -8.16 16 17 C -0.11 -0.92 3.44 -89.91 -0.31 -1.23 16 18 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.12 -0.84 6.48 -25.37 -0.16 -1.00 16 20 C 0.04 0.28 6.53 -2.75 -0.02 0.26 16 21 N -0.49 -3.92 5.28 -166.80 -0.88 -4.80 16 22 C 0.13 1.10 4.85 -83.61 -0.41 0.69 16 23 C -0.15 -1.12 10.06 -39.24 -0.39 -1.51 16 24 C 0.10 0.78 11.17 -17.60 -0.20 0.59 16 25 N -0.49 -4.65 10.36 -13.35 -0.14 -4.79 16 26 C 0.11 0.91 11.17 -17.60 -0.20 0.72 16 27 C -0.20 -1.68 8.00 -39.25 -0.31 -1.99 16 28 C 0.06 0.55 5.50 -1.79 -0.01 0.54 16 29 N -0.30 -6.77 12.42 31.44 0.39 -6.38 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.06 1.39 8.07 -51.92 -0.42 0.97 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 34 H 0.16 2.94 5.92 -52.49 -0.31 2.63 16 35 H 0.41 4.67 8.82 -40.82 -0.36 4.30 16 36 H 0.08 0.60 7.84 -51.93 -0.41 0.19 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.39 6.74 -51.93 -0.35 0.04 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 1.03 7.20 -52.49 -0.38 0.66 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.07 0.74 6.07 -51.93 -0.31 0.43 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -33.08 378.21 -9.69 -42.76 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.89 Total: 4.84 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -4.37 Total: -4.60 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.18 Total: -56.63 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.07 Total: -8.16 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.08 -9.69 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364057485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.700 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds