Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34976 * 125.97617 * 124.71318 * 10 9 7 12 12 C 1.35233 * 107.86088 * 179.87572 * 11 10 9 13 13 C 1.40412 * 107.86942 * 0.39116 * 12 11 10 14 14 N 1.40157 * 125.97432 * 179.74260 * 13 12 11 15 15 C 1.34780 * 120.00018 * 359.97438 * 14 13 12 16 16 O 1.21288 * 119.99845 * 0.02562 * 15 14 13 17 17 C 1.50693 * 119.99805 * 180.02562 * 15 14 13 18 18 H 1.08997 * 110.64808 * 59.30417 * 17 15 14 19 19 C 1.54603 * 110.72751 * 296.15208 * 17 15 14 20 20 C 1.53995 * 105.14020 * 219.68772 * 19 17 15 21 21 N 1.47901 * 107.05946 * 358.77331 * 20 19 17 22 22 C 1.39164 * 110.99872 * 145.84385 * 21 20 19 23 23 C 1.39482 * 120.86056 * 119.84881 * 22 21 20 24 24 C 1.37901 * 119.06045 * 179.72994 * 23 22 21 25 25 N 1.31995 * 120.84616 * 0.55506 * 24 23 22 26 26 C 1.31998 * 121.90883 * 359.71484 * 25 24 23 27 27 C 1.37901 * 120.84138 * 0.02562 * 26 25 24 28 28 C 1.48733 * 105.94260 * 25.20141 * 21 20 19 29 29 N 1.31222 * 108.05079 * 359.75807 * 13 12 11 30 30 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 32 32 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 33 33 H 1.07999 * 126.07000 * 359.97438 * 11 10 9 34 34 H 1.08000 * 126.06785 * 180.12837 * 12 11 10 35 35 H 0.96998 * 119.99915 * 180.02562 * 14 13 12 36 36 H 1.09002 * 110.30539 * 338.60193 * 19 17 15 37 37 H 1.08995 * 110.30543 * 100.76490 * 19 17 15 38 38 H 1.08993 * 109.91593 * 118.12799 * 20 19 17 39 39 H 1.09002 * 109.90947 * 239.42218 * 20 19 17 40 40 H 1.07994 * 120.47031 * 359.97438 * 23 22 21 41 41 H 1.08000 * 119.57184 * 180.29294 * 24 23 22 42 42 H 1.07996 * 119.57522 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.45981 * 180.02562 * 27 26 25 44 44 H 1.09005 * 110.83663 * 202.57265 * 28 21 20 45 45 H 1.09001 * 110.58253 * 79.38293 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2454 -4.6196 0.8974 12 6 3.2609 -5.4424 0.5501 13 6 3.8693 -4.9144 -0.5999 14 7 4.9657 -5.4647 -1.2777 15 6 5.5309 -6.6041 -0.8319 16 8 5.0905 -7.1535 0.1557 17 6 6.7101 -7.1955 -1.5604 18 1 7.5393 -6.4885 -1.5872 19 6 6.3104 -7.6242 -2.9910 20 6 7.0429 -8.9575 -3.2307 21 7 7.8336 -9.2430 -2.0139 22 6 7.8923 -10.6113 -1.7670 23 6 9.1158 -11.2800 -1.7311 24 6 9.1312 -12.6355 -1.4777 25 7 8.0077 -13.3002 -1.2818 26 6 6.8302 -12.7046 -1.3133 27 6 6.7289 -11.3508 -1.5552 28 6 7.1475 -8.5290 -0.9040 29 7 3.2322 -3.8153 -0.9288 30 1 -0.4850 0.8401 0.0004 31 1 0.6247 -2.5571 0.8897 32 1 0.6240 -2.5568 -0.8903 33 1 1.5846 -4.7465 1.7421 34 1 3.5547 -6.3434 1.0681 35 1 5.3181 -5.0251 -2.0673 36 1 5.2319 -7.7683 -3.0554 37 1 6.6370 -6.8776 -3.7148 38 1 6.3184 -9.7543 -3.3983 39 1 7.7056 -8.8674 -4.0915 40 1 10.0383 -10.7432 -1.8954 41 1 10.0743 -13.1606 -1.4433 42 1 5.9347 -13.2851 -1.1474 43 1 5.7622 -10.8697 -1.5792 44 1 7.8349 -8.3442 -0.0784 45 1 6.2792 -9.0935 -0.5641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364057485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = 78.426690 kcal Electronic energy + Delta-G solvation = -28007.335480 eV Core-core repulsion = 24026.116723 eV Total energy + Delta-G solvation = -3981.218757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.32634 -41.74171 -40.74542 -39.07027 -36.26465 -35.31878 -34.49490 -32.77217 -32.20629 -31.00168 -30.62731 -30.12331 -28.57132 -25.69030 -24.76393 -24.29848 -23.63826 -22.41899 -21.99489 -21.51231 -20.68112 -18.91903 -18.69391 -18.17911 -17.90607 -17.46544 -17.06119 -16.83916 -16.51186 -16.26666 -15.95905 -15.67610 -15.40322 -15.17472 -14.87690 -14.64087 -14.57138 -14.26701 -14.19384 -13.92284 -13.83534 -13.69968 -13.35905 -12.95154 -12.79777 -12.70691 -12.61957 -12.39997 -12.28893 -12.09201 -11.90394 -11.61303 -11.40596 -10.85283 -10.72344 -10.54784 -10.46538 -10.13661 -9.78577 -9.75864 -9.14300 -8.33587 -6.47810 0.10974 0.19338 0.91400 1.32797 1.38384 1.40111 1.43152 1.49797 2.20465 2.24913 2.37673 2.72644 2.78900 2.98335 3.27790 3.54725 3.56542 3.65581 3.90234 3.97381 4.02578 4.12902 4.19893 4.23000 4.26357 4.29450 4.47933 4.65807 4.71897 4.76208 4.83317 4.84376 4.87729 4.88511 4.90782 4.91719 5.01360 5.05438 5.15056 5.25580 5.51518 5.55694 5.61937 5.78961 5.91664 6.12846 6.22553 6.28287 6.63544 6.96856 7.00314 7.10194 7.22142 8.73798 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030283 B = 0.001824 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.375949 B =15346.230602 C =15809.409605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.053 0.947 9 C 0.272 3.728 10 N -0.343 5.343 11 C 0.055 3.945 12 C -0.294 4.294 13 C 0.265 3.735 14 N -0.620 5.620 15 C 0.530 3.470 16 O -0.547 6.547 17 C -0.095 4.095 18 H 0.143 0.857 19 C -0.118 4.118 20 C 0.041 3.959 21 N -0.482 5.482 22 C 0.118 3.882 23 C -0.149 4.149 24 C 0.099 3.901 25 N -0.516 5.516 26 C 0.098 3.902 27 C -0.209 4.209 28 C 0.061 3.939 29 N -0.344 5.344 30 H 0.273 0.727 31 H 0.058 0.942 32 H 0.022 0.978 33 H 0.199 0.801 34 H 0.167 0.833 35 H 0.426 0.574 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.052 0.948 39 H 0.105 0.895 40 H 0.159 0.841 41 H 0.184 0.816 42 H 0.169 0.831 43 H 0.134 0.866 44 H 0.093 0.907 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.786 -21.537 -6.279 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.125 5.125 11 C -0.094 4.094 12 C -0.325 4.325 13 C 0.010 3.990 14 N -0.270 5.270 15 C 0.318 3.682 16 O -0.423 6.423 17 C -0.117 4.117 18 H 0.160 0.840 19 C -0.156 4.156 20 C -0.085 4.085 21 N -0.203 5.203 22 C 0.015 3.985 23 C -0.169 4.169 24 C -0.058 4.058 25 N -0.225 5.225 26 C -0.058 4.058 27 C -0.231 4.231 28 C -0.065 4.065 29 N -0.175 5.175 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.216 0.784 34 H 0.184 0.816 35 H 0.263 0.737 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.177 0.823 41 H 0.201 0.799 42 H 0.186 0.814 43 H 0.152 0.848 44 H 0.112 0.888 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.731 -21.479 -6.320 28.560 hybrid contribution -0.908 1.212 0.300 1.543 sum 16.823 -20.267 -6.020 27.019 Atomic orbital electron populations 1.69989 1.07219 1.28834 1.49816 1.25747 0.95850 1.02739 0.93873 0.85400 0.78280 0.77827 0.78929 1.19864 1.19514 1.19751 1.21366 0.93388 0.90933 1.52975 0.92882 1.19339 0.85690 0.81527 0.98100 1.48843 1.23846 1.20382 1.19465 1.23166 1.00568 0.88995 0.96658 1.21705 1.02310 1.06565 1.01943 1.19476 0.91776 0.93181 0.94551 1.42613 1.28446 1.25315 1.30595 1.21108 0.84228 0.78679 0.84206 1.90640 1.63647 1.60815 1.27162 1.22176 0.95220 0.98433 0.95901 0.83966 1.22499 1.00806 0.98062 0.94282 1.23066 0.95907 0.96576 0.92907 1.62394 1.49198 1.04934 1.03807 1.19506 0.93443 0.89851 0.95699 1.22284 0.98536 0.95460 1.00618 1.23214 0.97322 0.91605 0.93669 1.67762 0.99406 1.41346 1.14031 1.22912 0.96233 0.92186 0.94490 1.22781 1.00067 0.96676 1.03545 1.23155 0.97685 0.92146 0.93528 1.77254 1.04618 1.18129 1.17512 0.91842 0.92459 0.96014 0.78390 0.81591 0.73651 0.91155 0.86662 0.92967 0.87665 0.82323 0.79934 0.81369 0.84789 0.88833 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.70 13.29 21.45 0.28 -51.42 16 2 C 0.02 1.01 5.46 84.66 0.46 1.47 16 3 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -30.61 9.24 25.60 0.24 -30.37 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.27 13.98 6.26 85.63 0.54 14.52 16 10 N -0.34 -15.87 3.67 -351.85 -1.29 -17.16 16 11 C 0.05 2.12 11.43 83.52 0.95 3.08 16 12 C -0.29 -11.15 9.61 22.11 0.21 -10.94 16 13 C 0.26 10.07 8.11 133.33 1.08 11.15 16 14 N -0.62 -16.82 5.43 -307.51 -1.67 -18.49 16 15 C 0.53 12.81 6.99 87.65 0.61 13.42 16 16 O -0.55 -17.11 12.88 -3.06 -0.04 -17.15 16 17 C -0.10 -1.40 3.44 -10.33 -0.04 -1.44 16 18 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 19 C -0.12 -1.29 6.48 31.48 0.20 -1.09 16 20 C 0.04 0.47 6.53 86.45 0.56 1.03 16 21 N -0.48 -6.82 5.28 -681.64 -3.60 -10.42 16 22 C 0.12 1.83 4.85 38.57 0.19 2.02 16 23 C -0.15 -1.97 10.06 22.49 0.23 -1.74 16 24 C 0.10 1.36 11.17 84.59 0.95 2.30 16 25 N -0.52 -9.37 10.36 -196.15 -2.03 -11.40 16 26 C 0.10 1.61 11.17 84.59 0.95 2.56 16 27 C -0.21 -3.36 8.00 22.49 0.18 -3.18 16 28 C 0.06 1.02 5.50 86.61 0.48 1.50 16 29 N -0.34 -15.55 12.42 -54.45 -0.68 -16.22 16 30 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.06 2.88 8.07 -2.38 -0.02 2.86 16 32 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.20 6.10 8.06 -2.91 -0.02 6.08 16 34 H 0.17 6.06 5.92 -2.91 -0.02 6.04 16 35 H 0.43 8.94 8.82 -92.71 -0.82 8.12 16 36 H 0.07 0.94 7.84 -2.39 -0.02 0.92 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 0.64 6.74 -2.39 -0.02 0.63 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 41 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.13 2.07 7.20 -2.91 -0.02 2.05 16 44 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.05 1.09 6.07 -2.39 -0.01 1.08 16 Total: -1.00 -71.87 378.21 1.01 -70.87 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.21 Total: 22.03 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 7.79 Total: 4.28 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -8.98 Total: -125.11 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.04 Total: -17.15 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.87 1.01 -70.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364057485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.294 kcal (2) G-P(sol) polarization free energy of solvation -71.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds