Wall clock time and date at job start Sat Apr 11 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99761 * 2 1 4 4 H 1.48496 * 109.46910 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47132 * 299.99934 * 3 2 1 6 6 H 1.48494 * 109.47258 * 60.00217 * 3 2 1 7 7 C 1.37875 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99558 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47396 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97914 * 124.99823 * 10 9 7 12 12 C 1.35235 * 107.86168 * 180.02562 * 11 10 9 13 13 C 1.40402 * 107.87114 * 359.97438 * 12 11 10 14 14 N 1.40160 * 125.97504 * 180.02562 * 13 12 11 15 15 C 1.34769 * 119.99939 * 359.97438 * 14 13 12 16 16 O 1.21297 * 120.00282 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.00076 * 180.02562 * 15 14 13 18 18 H 1.09003 * 110.90294 * 303.86986 * 17 15 14 19 19 C 1.55391 * 111.02608 * 67.60486 * 17 15 14 20 20 C 1.54324 * 102.90251 * 153.63664 * 19 17 15 21 21 N 1.47438 * 107.36486 * 337.89615 * 20 19 17 22 22 C 1.39168 * 111.00098 * 236.65645 * 21 20 19 23 23 C 1.39480 * 120.86646 * 323.57056 * 22 21 20 24 24 C 1.37892 * 119.06866 * 179.72734 * 23 22 21 25 25 N 1.31993 * 120.84098 * 0.54931 * 24 23 22 26 26 C 1.31990 * 121.91101 * 359.71991 * 25 24 23 27 27 C 1.37890 * 120.84524 * 359.97438 * 26 25 24 28 28 C 1.47845 * 108.57371 * 358.92745 * 21 20 19 29 29 N 1.31218 * 108.05382 * 0.26379 * 13 12 11 30 30 H 0.97006 * 119.99976 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47378 * 60.00507 * 9 7 2 32 32 H 1.09003 * 109.47741 * 300.00148 * 9 7 2 33 33 H 1.08006 * 126.06683 * 0.02708 * 11 10 9 34 34 H 1.08002 * 126.06053 * 180.02562 * 12 11 10 35 35 H 0.96998 * 119.99702 * 180.02562 * 14 13 12 36 36 H 1.09004 * 110.68031 * 35.33570 * 19 17 15 37 37 H 1.08997 * 110.84635 * 272.02040 * 19 17 15 38 38 H 1.09000 * 109.89012 * 218.40877 * 20 19 17 39 39 H 1.08997 * 109.88299 * 97.38118 * 20 19 17 40 40 H 1.08001 * 120.46227 * 359.96657 * 23 22 21 41 41 H 1.08004 * 119.57798 * 180.24683 * 24 23 22 42 42 H 1.08005 * 119.57709 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.46886 * 180.02562 * 27 26 25 44 44 H 1.08997 * 110.37915 * 142.92253 * 28 21 20 45 45 H 1.08998 * 110.37050 * 265.27069 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2421 -4.6224 0.8942 12 6 3.2610 -5.4423 0.5500 13 6 3.8690 -4.9146 -0.6002 14 7 4.9647 -5.4654 -1.2787 15 6 5.5296 -6.6050 -0.8332 16 8 5.0895 -7.1543 0.1547 17 6 6.7082 -7.1970 -1.5624 18 1 6.4677 -7.3748 -2.6105 19 6 7.9609 -6.2874 -1.4284 20 6 9.1288 -7.2835 -1.5878 21 7 8.6121 -8.6240 -1.2560 22 6 9.3537 -9.2049 -0.2317 23 6 10.7318 -9.0076 -0.1454 24 6 11.4294 -9.5962 0.8882 25 7 10.8111 -10.3462 1.7812 26 6 9.5098 -10.5613 1.7308 27 6 8.7392 -10.0038 0.7325 28 6 7.1891 -8.4992 -0.8748 29 7 3.2353 -3.8127 -0.9261 30 1 -0.4850 0.8401 -0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 1.5775 -4.7525 1.7356 34 1 3.5543 -6.3437 1.0677 35 1 5.3169 -5.0260 -2.0685 36 1 7.9896 -5.8138 -0.4470 37 1 7.9827 -5.5382 -2.2198 38 1 9.9376 -7.0188 -0.9067 39 1 9.4903 -7.2694 -2.6159 40 1 11.2446 -8.3992 -0.8756 41 1 12.4961 -9.4456 0.9653 42 1 9.0426 -11.1819 2.4812 43 1 7.6749 -10.1834 0.6973 44 1 6.6214 -9.3541 -1.2419 45 1 7.0924 -8.4148 0.2076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364057490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:58 Heat of formation + Delta-G solvation = 99.448287 kcal Electronic energy + Delta-G solvation = -28117.874798 eV Core-core repulsion = 24137.567606 eV Total energy + Delta-G solvation = -3980.307192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39926 -40.69490 -39.67010 -38.32199 -34.89777 -33.88837 -33.33197 -31.85333 -31.09850 -29.86163 -29.55842 -29.37626 -26.79993 -24.76310 -23.94721 -23.18721 -22.40262 -21.37181 -21.07036 -20.13469 -19.59340 -18.30046 -17.20373 -16.83262 -16.64047 -16.41402 -16.12948 -15.81021 -15.42176 -15.19068 -14.86869 -14.39802 -14.28580 -14.24083 -13.93221 -13.86958 -13.67504 -13.52248 -12.93248 -12.73273 -12.43674 -12.32961 -12.26921 -11.86197 -11.79774 -11.63986 -11.32569 -11.10232 -10.92240 -10.67609 -10.51782 -10.31553 -10.09520 -9.78607 -9.68154 -9.54536 -9.46688 -8.68821 -8.64787 -8.22194 -7.56231 -6.29407 -4.34613 0.85672 0.97144 2.14928 2.57919 2.83450 3.18430 3.18898 3.26142 3.32233 3.60046 3.60607 3.77590 3.91037 3.97527 4.20539 4.27274 4.37627 4.47158 4.67209 4.72147 4.74114 4.79215 4.94730 5.02153 5.05931 5.20314 5.26772 5.32755 5.36904 5.47581 5.47961 5.52351 5.54860 5.62596 5.72436 6.16493 6.22804 6.33679 6.40047 6.50172 6.65549 6.79416 6.99335 7.30068 7.46400 7.65458 7.75436 7.82587 7.96927 8.09242 8.55047 8.74689 9.31272 10.79389 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.001951 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.620025 B =14347.694690 C =14751.123195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.317 5.317 11 C 0.052 3.948 12 C -0.287 4.287 13 C 0.254 3.746 14 N -0.626 5.626 15 C 0.530 3.470 16 O -0.515 6.515 17 C -0.116 4.116 18 H 0.118 0.882 19 C -0.133 4.133 20 C 0.039 3.961 21 N -0.475 5.475 22 C 0.155 3.845 23 C -0.214 4.214 24 C 0.121 3.879 25 N -0.511 5.511 26 C 0.125 3.875 27 C -0.216 4.216 28 C 0.057 3.943 29 N -0.303 5.303 30 H 0.267 0.733 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.140 0.860 44 H 0.097 0.903 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.443 -17.887 -2.866 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.099 5.099 11 C -0.098 4.098 12 C -0.319 4.319 13 C 0.001 3.999 14 N -0.273 5.273 15 C 0.315 3.685 16 O -0.388 6.388 17 C -0.138 4.138 18 H 0.136 0.864 19 C -0.171 4.171 20 C -0.086 4.086 21 N -0.187 5.187 22 C 0.047 3.953 23 C -0.237 4.237 24 C -0.035 4.035 25 N -0.222 5.222 26 C -0.032 4.032 27 C -0.239 4.239 28 C -0.068 4.068 29 N -0.134 5.134 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.186 0.814 34 H 0.177 0.823 35 H 0.247 0.753 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.154 0.846 41 H 0.172 0.828 42 H 0.173 0.827 43 H 0.158 0.842 44 H 0.116 0.884 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.289 -17.750 -2.812 25.641 hybrid contribution -0.106 1.373 -0.129 1.383 sum 18.183 -16.378 -2.940 24.647 Atomic orbital electron populations 1.69925 1.06041 1.27576 1.49716 1.24954 0.95000 0.99593 0.94583 0.86268 0.80011 0.82435 0.77764 1.19595 1.20658 1.20732 1.21276 0.93996 0.89338 1.52084 0.91274 1.19773 0.85606 0.81292 0.99342 1.49108 1.22935 1.19681 1.18178 1.22581 1.00268 0.90245 0.96725 1.21505 1.02207 1.06458 1.01702 1.19103 0.91581 0.94399 0.94823 1.42412 1.29727 1.24858 1.30316 1.20137 0.83779 0.79877 0.84747 1.90663 1.62480 1.60163 1.25518 1.22448 0.93367 0.96163 1.01860 0.86402 1.22886 0.92195 0.97786 1.04269 1.23133 0.97455 0.84750 1.03287 1.60266 1.03633 1.20830 1.33989 1.19436 0.93067 0.94792 0.87996 1.21858 0.93303 1.06085 1.02448 1.22587 1.00128 0.91342 0.89458 1.67733 1.10980 1.16366 1.27140 1.22618 0.89288 0.95363 0.95910 1.22078 1.01959 1.03260 0.96629 1.23151 0.85564 0.97090 1.01032 1.77336 1.03517 1.16072 1.16438 0.92334 0.93648 0.92484 0.81428 0.82326 0.75343 0.90060 0.88733 0.90497 0.88928 0.84598 0.82793 0.82671 0.84240 0.88446 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 13.29 55.43 0.74 -24.22 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.45 9.23 -34.44 -0.32 -14.77 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.26 6.41 6.26 -5.20 -0.03 6.37 16 10 N -0.32 -7.18 3.67 -62.57 -0.23 -7.41 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 12 C -0.29 -5.46 9.60 -39.84 -0.38 -5.84 16 13 C 0.25 4.83 8.11 -154.39 -1.25 3.58 16 14 N -0.63 -8.73 5.45 -11.13 -0.06 -8.79 16 15 C 0.53 6.60 7.12 -10.99 -0.08 6.53 16 16 O -0.51 -8.04 12.85 5.54 0.07 -7.97 16 17 C -0.12 -0.94 3.43 -89.49 -0.31 -1.25 16 18 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.13 -0.89 6.43 -24.77 -0.16 -1.05 16 20 C 0.04 0.24 6.22 -2.84 -0.02 0.23 16 21 N -0.47 -3.81 5.26 -167.72 -0.88 -4.69 16 22 C 0.16 1.38 5.79 -83.61 -0.48 0.90 16 23 C -0.21 -1.69 8.66 -39.25 -0.34 -2.03 16 24 C 0.12 1.02 11.17 -17.61 -0.20 0.82 16 25 N -0.51 -5.26 10.36 -13.35 -0.14 -5.40 16 26 C 0.12 1.14 11.17 -17.61 -0.20 0.94 16 27 C -0.22 -1.93 8.73 -39.25 -0.34 -2.28 16 28 C 0.06 0.49 4.64 -2.30 -0.01 0.48 16 29 N -0.30 -6.72 12.42 31.44 0.39 -6.33 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.39 8.07 -51.93 -0.42 0.98 16 33 H 0.17 2.64 8.06 -52.48 -0.42 2.22 16 34 H 0.16 2.91 5.92 -52.49 -0.31 2.60 16 35 H 0.41 4.55 8.82 -40.82 -0.36 4.19 16 36 H 0.08 0.66 8.04 -51.93 -0.42 0.25 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.46 5.98 -51.93 -0.31 0.15 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.14 0.78 6.88 -52.49 -0.36 0.42 16 41 H 0.15 0.88 8.06 -52.48 -0.42 0.45 16 42 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.14 1.11 6.54 -52.49 -0.34 0.76 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.86 5.80 -51.93 -0.30 0.55 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -33.46 374.65 -9.65 -43.11 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.75 Total: 5.02 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -4.41 Total: -4.98 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.18 Total: -56.83 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.97 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.46 -9.65 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364057490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.559 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds