Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99761 * 2 1 4 4 H 1.48496 * 109.46910 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47132 * 299.99934 * 3 2 1 6 6 H 1.48494 * 109.47258 * 60.00217 * 3 2 1 7 7 C 1.37875 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99558 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47396 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97914 * 124.99823 * 10 9 7 12 12 C 1.35235 * 107.86168 * 180.02562 * 11 10 9 13 13 C 1.40402 * 107.87114 * 359.97438 * 12 11 10 14 14 N 1.40160 * 125.97504 * 180.02562 * 13 12 11 15 15 C 1.34769 * 119.99939 * 359.97438 * 14 13 12 16 16 O 1.21297 * 120.00282 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.00076 * 180.02562 * 15 14 13 18 18 H 1.09003 * 110.90294 * 303.86986 * 17 15 14 19 19 C 1.55391 * 111.02608 * 67.60486 * 17 15 14 20 20 C 1.54324 * 102.90251 * 153.63664 * 19 17 15 21 21 N 1.47438 * 107.36486 * 337.89615 * 20 19 17 22 22 C 1.39168 * 111.00098 * 236.65645 * 21 20 19 23 23 C 1.39480 * 120.86646 * 323.57056 * 22 21 20 24 24 C 1.37892 * 119.06866 * 179.72734 * 23 22 21 25 25 N 1.31993 * 120.84098 * 0.54931 * 24 23 22 26 26 C 1.31990 * 121.91101 * 359.71991 * 25 24 23 27 27 C 1.37890 * 120.84524 * 359.97438 * 26 25 24 28 28 C 1.47845 * 108.57371 * 358.92745 * 21 20 19 29 29 N 1.31218 * 108.05382 * 0.26379 * 13 12 11 30 30 H 0.97006 * 119.99976 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47378 * 60.00507 * 9 7 2 32 32 H 1.09003 * 109.47741 * 300.00148 * 9 7 2 33 33 H 1.08006 * 126.06683 * 0.02708 * 11 10 9 34 34 H 1.08002 * 126.06053 * 180.02562 * 12 11 10 35 35 H 0.96998 * 119.99702 * 180.02562 * 14 13 12 36 36 H 1.09004 * 110.68031 * 35.33570 * 19 17 15 37 37 H 1.08997 * 110.84635 * 272.02040 * 19 17 15 38 38 H 1.09000 * 109.89012 * 218.40877 * 20 19 17 39 39 H 1.08997 * 109.88299 * 97.38118 * 20 19 17 40 40 H 1.08001 * 120.46227 * 359.96657 * 23 22 21 41 41 H 1.08004 * 119.57798 * 180.24683 * 24 23 22 42 42 H 1.08005 * 119.57709 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.46886 * 180.02562 * 27 26 25 44 44 H 1.08997 * 110.37915 * 142.92253 * 28 21 20 45 45 H 1.08998 * 110.37050 * 265.27069 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2421 -4.6224 0.8942 12 6 3.2610 -5.4423 0.5500 13 6 3.8690 -4.9146 -0.6002 14 7 4.9647 -5.4654 -1.2787 15 6 5.5296 -6.6050 -0.8332 16 8 5.0895 -7.1543 0.1547 17 6 6.7082 -7.1970 -1.5624 18 1 6.4677 -7.3748 -2.6105 19 6 7.9609 -6.2874 -1.4284 20 6 9.1288 -7.2835 -1.5878 21 7 8.6121 -8.6240 -1.2560 22 6 9.3537 -9.2049 -0.2317 23 6 10.7318 -9.0076 -0.1454 24 6 11.4294 -9.5962 0.8882 25 7 10.8111 -10.3462 1.7812 26 6 9.5098 -10.5613 1.7308 27 6 8.7392 -10.0038 0.7325 28 6 7.1891 -8.4992 -0.8748 29 7 3.2353 -3.8127 -0.9261 30 1 -0.4850 0.8401 -0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 1.5775 -4.7525 1.7356 34 1 3.5543 -6.3437 1.0677 35 1 5.3169 -5.0260 -2.0685 36 1 7.9896 -5.8138 -0.4470 37 1 7.9827 -5.5382 -2.2198 38 1 9.9376 -7.0188 -0.9067 39 1 9.4903 -7.2694 -2.6159 40 1 11.2446 -8.3992 -0.8756 41 1 12.4961 -9.4456 0.9653 42 1 9.0426 -11.1819 2.4812 43 1 7.6749 -10.1834 0.6973 44 1 6.6214 -9.3541 -1.2419 45 1 7.0924 -8.4148 0.2076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364057490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = 77.341906 kcal Electronic energy + Delta-G solvation = -28118.833403 eV Core-core repulsion = 24137.567606 eV Total energy + Delta-G solvation = -3981.265797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.35612 -41.84247 -40.70853 -39.11110 -36.27644 -35.32480 -34.47994 -32.77248 -32.46211 -31.00106 -30.58505 -30.13777 -28.59243 -25.82012 -24.71221 -24.54234 -23.41455 -22.34333 -21.94977 -21.48737 -20.73551 -19.07472 -18.70836 -18.20552 -17.94054 -17.27357 -17.03849 -16.84352 -16.42795 -16.36135 -16.09753 -15.69670 -15.51308 -14.93489 -14.89588 -14.68121 -14.48557 -14.33493 -14.28369 -14.15602 -13.84386 -13.68072 -13.36821 -13.01980 -12.86781 -12.73440 -12.45260 -12.31762 -12.23548 -12.06107 -11.90707 -11.63111 -11.39588 -11.27851 -10.88241 -10.73564 -10.43800 -10.09249 -9.78244 -9.27270 -9.15002 -8.34554 -6.48575 0.23303 0.32235 0.90194 1.31104 1.36663 1.37838 1.42210 1.51543 2.18948 2.23504 2.36361 2.63339 2.97388 2.98518 3.25195 3.30372 3.60949 3.64164 3.88332 3.95248 4.06990 4.11491 4.14557 4.20799 4.26218 4.34909 4.45861 4.65191 4.70575 4.75770 4.76045 4.81745 4.87656 4.89478 4.91172 4.92538 4.99210 5.00995 5.07198 5.15044 5.55381 5.61409 5.73558 5.78240 5.90878 6.03701 6.21269 6.27392 6.63332 6.95516 7.09161 7.11546 7.21540 8.73319 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.001951 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.620025 B =14347.694690 C =14751.123195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.055 3.945 12 C -0.294 4.294 13 C 0.264 3.736 14 N -0.620 5.620 15 C 0.532 3.468 16 O -0.546 6.546 17 C -0.103 4.103 18 H 0.148 0.852 19 C -0.129 4.129 20 C 0.039 3.961 21 N -0.473 5.473 22 C 0.142 3.858 23 C -0.212 4.212 24 C 0.112 3.888 25 N -0.539 5.539 26 C 0.112 3.888 27 C -0.227 4.227 28 C 0.059 3.941 29 N -0.344 5.344 30 H 0.273 0.727 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.199 0.801 34 H 0.167 0.833 35 H 0.426 0.574 36 H 0.063 0.937 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.160 0.840 41 H 0.178 0.822 42 H 0.170 0.830 43 H 0.143 0.857 44 H 0.101 0.899 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.359 -17.806 -3.829 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.125 5.125 11 C -0.094 4.094 12 C -0.325 4.325 13 C 0.010 3.990 14 N -0.269 5.269 15 C 0.319 3.681 16 O -0.421 6.421 17 C -0.125 4.125 18 H 0.165 0.835 19 C -0.167 4.167 20 C -0.086 4.086 21 N -0.186 5.186 22 C 0.034 3.966 23 C -0.235 4.235 24 C -0.044 4.044 25 N -0.250 5.250 26 C -0.044 4.044 27 C -0.250 4.250 28 C -0.068 4.068 29 N -0.175 5.175 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.216 0.784 34 H 0.185 0.815 35 H 0.264 0.736 36 H 0.082 0.918 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.177 0.823 41 H 0.195 0.805 42 H 0.187 0.813 43 H 0.160 0.840 44 H 0.119 0.881 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 20.228 -17.689 -3.790 27.138 hybrid contribution -0.639 1.212 0.188 1.383 sum 19.589 -16.477 -3.602 25.850 Atomic orbital electron populations 1.70001 1.07217 1.28719 1.49980 1.25755 0.95861 1.02783 0.93925 0.85284 0.78410 0.78340 0.78286 1.19836 1.19810 1.19625 1.21409 0.93358 0.90907 1.52726 0.92924 1.19348 0.85698 0.81549 0.98121 1.48845 1.23687 1.20273 1.19744 1.23173 1.00530 0.89000 0.96691 1.21710 1.02230 1.06651 1.01928 1.19468 0.91832 0.93172 0.94549 1.42582 1.28448 1.25277 1.30596 1.20977 0.84080 0.78770 0.84268 1.90645 1.63550 1.60830 1.27098 1.22456 0.91740 0.95859 1.02471 0.83477 1.22921 0.91360 0.98134 1.04297 1.23262 0.97184 0.83483 1.04677 1.60338 1.03099 1.21744 1.33383 1.19667 0.93766 0.94954 0.88224 1.22100 0.92929 1.05840 1.02602 1.23047 1.01343 0.90836 0.89218 1.67749 1.11540 1.17485 1.28271 1.22902 0.89283 0.95746 0.96472 1.22199 1.02218 1.03610 0.96985 1.23088 0.86294 0.97452 0.99929 1.77253 1.04601 1.18018 1.17608 0.91840 0.95985 0.92449 0.78375 0.81541 0.73625 0.91811 0.86210 0.90109 0.86662 0.82280 0.80480 0.81310 0.83969 0.88075 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.61 13.29 21.45 0.28 -51.33 16 2 C 0.02 0.93 5.46 84.65 0.46 1.40 16 3 Si 0.97 42.98 29.54 68.60 2.03 45.00 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.55 -30.38 9.23 25.60 0.24 -30.14 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 9 C 0.27 13.90 6.26 85.63 0.54 14.44 16 10 N -0.34 -15.82 3.67 -351.86 -1.29 -17.11 16 11 C 0.05 2.11 11.43 83.52 0.96 3.06 16 12 C -0.29 -11.07 9.60 22.10 0.21 -10.86 16 13 C 0.26 9.97 8.11 133.32 1.08 11.05 16 14 N -0.62 -16.49 5.45 -307.52 -1.68 -18.16 16 15 C 0.53 12.51 7.12 87.66 0.62 13.13 16 16 O -0.55 -16.72 12.85 -3.08 -0.04 -16.76 16 17 C -0.10 -1.42 3.43 -10.06 -0.03 -1.45 16 18 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 19 C -0.13 -1.35 6.43 31.87 0.20 -1.15 16 20 C 0.04 0.36 6.22 86.65 0.54 0.90 16 21 N -0.47 -6.55 5.26 -684.55 -3.60 -10.15 16 22 C 0.14 2.33 5.79 38.58 0.22 2.55 16 23 C -0.21 -2.93 8.66 22.49 0.19 -2.74 16 24 C 0.11 1.73 11.17 84.59 0.94 2.67 16 25 N -0.54 -10.83 10.36 -196.16 -2.03 -12.86 16 26 C 0.11 2.03 11.17 84.59 0.94 2.97 16 27 C -0.23 -3.99 8.73 22.49 0.20 -3.79 16 28 C 0.06 0.91 4.64 86.77 0.40 1.31 16 29 N -0.34 -15.45 12.42 -54.45 -0.68 -16.12 16 30 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 31 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 2.88 8.07 -2.39 -0.02 2.86 16 33 H 0.20 6.07 8.06 -2.91 -0.02 6.05 16 34 H 0.17 6.02 5.92 -2.91 -0.02 6.00 16 35 H 0.43 8.65 8.82 -92.71 -0.82 7.83 16 36 H 0.06 0.93 8.04 -2.38 -0.02 0.91 16 37 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.72 5.98 -2.39 -0.01 0.71 16 39 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.16 1.35 6.88 -2.91 -0.02 1.33 16 41 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.14 2.29 6.54 -2.91 -0.02 2.27 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 1.29 5.80 -2.39 -0.01 1.27 16 Total: -1.00 -73.30 374.65 0.94 -72.36 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.22 Total: 21.76 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 7.72 Total: 3.36 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -8.99 Total: -125.73 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.04 Total: -16.76 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -73.30 0.94 -72.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364057490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.706 kcal (2) G-P(sol) polarization free energy of solvation -73.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds